Mutagenetix > Incidental Mutation

Incidental Mutation 'R7982:Trim30d'

651267

Institutional Source

Beutler Lab

Gene Symbol

Trim30d

Ensembl Gene

ENSMUSG00000057596

Gene Name

tripartite motif-containing 30D

Synonyms

TRIM30-3, Trim79

MMRRC Submission

046023-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.053) question?

Stock #

R7982 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

104119221-104157056 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 104121817 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 309 (N309K)

Ref Sequence

ENSEMBL: ENSMUSP00000033211 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033211] [ENSMUST00000071069]

AlphaFold

E9PWL0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000033211
AA Change: N309K

PolyPhen 2 Score 0.949 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000033211
Gene: ENSMUSG00000057596
AA Change: N309K

Domain	Start	End	E-Value	Type
RING	15	58	1.72e-8	SMART
BBOX	91	132	5.25e-13	SMART
low complexity region	196	228	N/A	INTRINSIC
Pfam:SPRY	350	491	1.9e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000071069
AA Change: N159K

PolyPhen 2 Score 0.328 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000065020
Gene: ENSMUSG00000057596
AA Change: N159K

Domain	Start	End	E-Value	Type
coiled coil region	23	84	N/A	INTRINSIC
Pfam:SPRY	198	346	1.1e-14	PFAM

Predicted Effect

SMART Domains

Protein: ENSMUSP00000115684
Gene: ENSMUSG00000057596
AA Change: N82K

Domain	Start	End	E-Value	Type
PDB:4B3N\|B	58	197	3e-19	PDB
Blast:SPRY	122	209	4e-13	BLAST

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb6	A	G	1: 75,150,284 (GRCm39)	S625P	probably damaging	Het
Actl6b	A	G	5: 137,561,424 (GRCm39)	N142S	probably benign	Het
Ank1	A	T	8: 23,609,397 (GRCm39)	D1363V	probably damaging	Het
Aox4	A	C	1: 58,296,400 (GRCm39)	L1032F	possibly damaging	Het
Atosb	T	C	4: 43,034,483 (GRCm39)	T371A	probably damaging	Het
Bcl2l15	T	C	3: 103,740,158 (GRCm39)	M4T	probably damaging	Het
Cand1	A	T	10: 119,052,378 (GRCm39)	S242R	probably damaging	Het
Cant1	A	T	11: 118,300,968 (GRCm39)	V229D	probably benign	Het
Ccdc117	A	G	11: 5,481,460 (GRCm39)	S224P	possibly damaging	Het
Cdc42ep4	T	C	11: 113,619,402 (GRCm39)	R330G	possibly damaging	Het
Cep164	T	C	9: 45,690,162 (GRCm39)	E527G	probably benign	Het
Cfap58	A	G	19: 47,963,006 (GRCm39)	D472G	probably benign	Het
Cln6	A	C	9: 62,756,450 (GRCm39)	K198T	possibly damaging	Het
Col4a4	G	A	1: 82,549,162 (GRCm39)		probably benign	Het
Cyp1b1	T	C	17: 80,017,919 (GRCm39)	Y412C	probably damaging	Het
Dhx30	A	T	9: 109,914,524 (GRCm39)	L991Q	probably damaging	Het
Dst	C	T	1: 34,221,621 (GRCm39)	T2475I	possibly damaging	Het
Exoc8	A	T	8: 125,623,149 (GRCm39)	V406E	probably damaging	Het
Grk6	T	A	13: 55,599,519 (GRCm39)	C201S	probably damaging	Het
Helz	T	C	11: 107,517,456 (GRCm39)	V664A	possibly damaging	Het
Hsd17b11	A	G	5: 104,151,090 (GRCm39)	C215R	possibly damaging	Het
Ift25	T	C	4: 107,132,480 (GRCm39)	V89A	probably benign	Het
Kbtbd12	T	C	6: 88,595,616 (GRCm39)	I71M	possibly damaging	Het
Khdc1a	A	T	1: 21,421,130 (GRCm39)	H105L	probably benign	Het
Klf6	T	A	13: 5,911,822 (GRCm39)	L62Q	probably damaging	Het
Mc1r	A	G	8: 124,134,879 (GRCm39)	R211G	probably damaging	Het
Nt5m	T	A	11: 59,739,157 (GRCm39)	W68R	possibly damaging	Het
Nufip1	T	C	14: 76,363,679 (GRCm39)	V301A	probably benign	Het
Or10ac1	T	A	6: 42,515,225 (GRCm39)	T244S	probably damaging	Het
Or12d14-ps1	T	G	17: 37,673,502 (GRCm39)	F165V	probably damaging	Het
Or2b7	T	C	13: 21,740,136 (GRCm39)	N19D	probably benign	Het
Or51f5	A	T	7: 102,424,310 (GRCm39)	D193V	probably damaging	Het
Or5ac25	A	G	16: 59,181,927 (GRCm39)	I218T	probably benign	Het
Ostn	T	C	16: 27,140,189 (GRCm39)		probably null	Het
Pcdhb6	C	T	18: 37,467,273 (GRCm39)	R65*	probably null	Het
Pds5b	T	C	5: 150,693,406 (GRCm39)	I706T	probably damaging	Het
Pgm2	T	G	5: 64,258,302 (GRCm39)	Y96D	probably damaging	Het
Pkd1l2	G	A	8: 117,777,926 (GRCm39)	T875I	possibly damaging	Het
Poc1b	A	G	10: 99,000,764 (GRCm39)	S355G	probably benign	Het
Ppp6r1	A	C	7: 4,646,157 (GRCm39)	D181E	probably benign	Het
Pstpip2	G	A	18: 77,967,073 (GRCm39)	V325M	probably benign	Het
Rras2	A	T	7: 113,658,186 (GRCm39)	V92D	probably damaging	Het
Rsf1	CGGC	CGGCGGCGGGGGC	7: 97,229,139 (GRCm39)		probably benign	Het
Ryr3	GTCTTCTTCTTCTTCTTC	GTCTTCTTCTTCTTC	2: 112,499,594 (GRCm39)		probably benign	Het
Stac2	T	A	11: 97,933,379 (GRCm39)	M188L	probably benign	Het
Synrg	G	A	11: 83,910,644 (GRCm39)	D859N	probably damaging	Het
Tarbp1	A	T	8: 127,171,040 (GRCm39)	S987T	probably damaging	Het
Tbx20	C	A	9: 24,685,220 (GRCm39)		probably benign	Het
Ttc16	C	T	2: 32,665,047 (GRCm39)		probably benign	Het
Ttc34	T	A	4: 154,945,875 (GRCm39)	I303N	possibly damaging	Het
Ubr4	T	C	4: 139,155,519 (GRCm39)		probably null	Het
Uros	A	T	7: 133,294,278 (GRCm39)	S168T	unknown	Het
Vmn2r6	C	T	3: 64,467,241 (GRCm39)	G86D	probably damaging	Het
Ybx2	C	T	11: 69,831,448 (GRCm39)	T295I	possibly damaging	Het
Zbed5	T	A	5: 129,929,321 (GRCm39)	C146S	possibly damaging	Het
Zcchc2	G	A	1: 105,958,901 (GRCm39)	C1124Y	probably damaging	Het
Zfp626	G	A	7: 27,510,175 (GRCm39)		probably null	Het

Other mutations in Trim30d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01620:Trim30d	APN	7	104,121,333 (GRCm39)	missense	possibly damaging	0.81
IGL01818:Trim30d	APN	7	104,121,267 (GRCm39)	missense	probably damaging	1.00
IGL02552:Trim30d	APN	7	104,121,623 (GRCm39)	missense	probably damaging	0.98
IGL03000:Trim30d	APN	7	104,122,476 (GRCm39)	missense	probably benign	0.26
R0608:Trim30d	UTSW	7	104,121,692 (GRCm39)	missense	probably damaging	0.99
R0629:Trim30d	UTSW	7	104,136,862 (GRCm39)	missense	probably damaging	1.00
R1390:Trim30d	UTSW	7	104,132,610 (GRCm39)	missense	probably benign	0.41
R1460:Trim30d	UTSW	7	104,121,311 (GRCm39)	missense	probably benign	0.00
R1474:Trim30d	UTSW	7	104,121,701 (GRCm39)	missense	probably damaging	1.00
R1701:Trim30d	UTSW	7	104,133,389 (GRCm39)	nonsense	probably null
R1799:Trim30d	UTSW	7	104,132,682 (GRCm39)	missense	probably damaging	0.98
R2295:Trim30d	UTSW	7	104,137,149 (GRCm39)	missense	probably damaging	1.00
R3898:Trim30d	UTSW	7	104,132,736 (GRCm39)	missense	probably benign	0.01
R3953:Trim30d	UTSW	7	104,121,728 (GRCm39)	missense	probably damaging	1.00
R3954:Trim30d	UTSW	7	104,121,728 (GRCm39)	missense	probably damaging	1.00
R3955:Trim30d	UTSW	7	104,121,728 (GRCm39)	missense	probably damaging	1.00
R3957:Trim30d	UTSW	7	104,121,728 (GRCm39)	missense	probably damaging	1.00
R4086:Trim30d	UTSW	7	104,137,007 (GRCm39)	missense	probably damaging	1.00
R4087:Trim30d	UTSW	7	104,137,007 (GRCm39)	missense	probably damaging	1.00
R4089:Trim30d	UTSW	7	104,137,007 (GRCm39)	missense	probably damaging	1.00
R4580:Trim30d	UTSW	7	104,121,765 (GRCm39)	missense	possibly damaging	0.68
R4596:Trim30d	UTSW	7	104,121,733 (GRCm39)	missense	probably benign	0.02
R4926:Trim30d	UTSW	7	104,132,564 (GRCm39)	missense	probably benign	0.09
R5071:Trim30d	UTSW	7	104,137,165 (GRCm39)	missense	probably damaging	1.00
R5074:Trim30d	UTSW	7	104,137,165 (GRCm39)	missense	probably damaging	1.00
R5294:Trim30d	UTSW	7	104,121,695 (GRCm39)	missense	probably damaging	1.00
R5477:Trim30d	UTSW	7	104,121,347 (GRCm39)	missense	probably damaging	1.00
R5629:Trim30d	UTSW	7	104,137,136 (GRCm39)	missense	possibly damaging	0.87
R5743:Trim30d	UTSW	7	104,121,535 (GRCm39)	nonsense	probably null
R6178:Trim30d	UTSW	7	104,137,202 (GRCm39)	start codon destroyed	probably damaging	1.00
R6244:Trim30d	UTSW	7	104,136,817 (GRCm39)	missense	probably damaging	1.00
R6937:Trim30d	UTSW	7	104,132,634 (GRCm39)	missense	probably damaging	1.00
R7014:Trim30d	UTSW	7	104,132,543 (GRCm39)	missense	probably benign	0.01
R7323:Trim30d	UTSW	7	104,132,555 (GRCm39)	missense	probably benign	0.41
R7659:Trim30d	UTSW	7	104,121,554 (GRCm39)	missense	probably benign	0.01
R8353:Trim30d	UTSW	7	104,136,947 (GRCm39)	missense	probably damaging	0.99
R8453:Trim30d	UTSW	7	104,136,947 (GRCm39)	missense	probably damaging	0.99
X0026:Trim30d	UTSW	7	104,137,172 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTTAATCCGAGGAGCCAGGC -3'
(R):5'- ATGAACCCGTCTCCTCTCAATG -3'

Sequencing Primer
(F):5'- GAGCCAGGCATCACTTCTAGATATG -3'
(R):5'- ATGGTGCTTCTCCTACTATGTGCAG -3'

Posted On

2020-09-15