Mutagenetix > Incidental Mutation

Incidental Mutation 'R7988:Usp38'

651597

Institutional Source

Beutler Lab

Gene Symbol

Usp38

Ensembl Gene

ENSMUSG00000038250

Gene Name

ubiquitin specific peptidase 38

Synonyms

4833420O05Rik, 4631402N15Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7988 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

80980733-81014928 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 81014316 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 41 (M41L)

Ref Sequence

ENSEMBL: ENSMUSP00000039943 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042724]

AlphaFold

Q8BW70

Predicted Effect

probably benign
Transcript: ENSMUST00000042724
AA Change: M41L

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000039943
Gene: ENSMUSG00000038250
AA Change: M41L

Domain	Start	End	E-Value	Type
SCOP:d1gw5a_	1	365	5e-3	SMART
Pfam:UCH	444	946	1.8e-47	PFAM
Pfam:UCH_1	445	921	2.2e-23	PFAM
low complexity region	995	1006	N/A	INTRINSIC
low complexity region	1019	1033	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (59/59)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610030E20Rik	C	T	6: 72,347,652	T56M	probably damaging	Het
2010111I01Rik	A	G	13: 63,061,140	D357G	probably benign	Het
4932415D10Rik	T	C	10: 82,296,100	I359V	probably benign	Het
Adamtsl5	C	T	10: 80,345,538	S36N	probably benign	Het
Adgrf5	A	T	17: 43,439,813		probably benign	Het
Ago1	A	G	4: 126,460,417	F200S	probably damaging	Het
Akr1cl	T	C	1: 65,024,706	D108G	possibly damaging	Het
Arhgef3	A	T	14: 27,401,786	D468V	probably benign	Het
Aspn	T	C	13: 49,551,877	C72R	possibly damaging	Het
Baz2b	T	C	2: 59,962,141	T548A	possibly damaging	Het
Birc6	G	A	17: 74,599,373		probably null	Het
Btnl2	A	T	17: 34,358,275	T135S	possibly damaging	Het
Ccnl1	T	A	3: 65,957,861	I90F	possibly damaging	Het
Ccnt1	T	C	15: 98,565,143		probably null	Het
Cemip	C	A	7: 84,003,408		probably benign	Het
Cfap45	A	G	1: 172,529,934	D85G	probably damaging	Het
Cfap54	T	A	10: 92,902,079	D2319V	unknown	Het
Cma1	T	C	14: 55,944,532	M14V	possibly damaging	Het
Cmtm1	T	C	8: 104,310,142		probably benign	Het
Col27a1	A	G	4: 63,331,322	H1738R	unknown	Het
Colq	T	A	14: 31,553,837	D41V	probably damaging	Het
Cubn	T	C	2: 13,332,355	T2437A	probably benign	Het
Dnah14	A	G	1: 181,783,574	D3755G	probably damaging	Het
Eprs	A	G	1: 185,418,348	Y1349C	probably damaging	Het
Eps8	C	T	6: 137,528,571	R53Q	possibly damaging	Het
Fam196a	T	G	7: 134,917,698	K368Q	probably damaging	Het
Fbf1	T	C	11: 116,152,768	D405G	probably benign	Het
Fen1	C	T	19: 10,200,310	E257K	possibly damaging	Het
Gstm7	A	T	3: 107,926,955	M198K	possibly damaging	Het
Hook3	A	T	8: 26,073,647	S190T	probably benign	Het
Htra4	A	C	8: 25,030,510		probably null	Het
Ighv1-15	T	C	12: 114,657,496	I70V	probably benign	Het
Ikzf4	T	A	10: 128,634,455	N452Y	probably damaging	Het
Iqcf5	T	A	9: 106,515,821	N92K	possibly damaging	Het
Itk	A	G	11: 46,355,834	Y186H	probably damaging	Het
Klhdc10	T	C	6: 30,446,691	S282P	probably benign	Het
Klhl18	T	A	9: 110,476,509	E29V	possibly damaging	Het
Ky	T	C	9: 102,525,415	S140P	probably damaging	Het
Lmntd2	T	C	7: 141,213,637	E112G	unknown	Het
Lrrc36	C	A	8: 105,452,086	D304E	possibly damaging	Het
Macf1	A	T	4: 123,506,480	F674Y	probably damaging	Het
Notch1	C	T	2: 26,471,001	D1111N	probably benign	Het
Osbpl8	T	G	10: 111,272,080	N312K	possibly damaging	Het
Otogl	C	T	10: 107,895,776	C168Y	probably damaging	Het
Phldb2	T	G	16: 45,825,571	T171P	probably benign	Het
Ppef2	A	T	5: 92,238,982	F365L	probably benign	Het
Repin1	G	T	6: 48,597,345	E403*	probably null	Het
Ryr1	G	A	7: 29,096,171	T1105I	probably benign	Het
Sclt1	T	A	3: 41,663,454	*29L	probably null	Het
Scn11a	T	C	9: 119,765,437	K1297E	probably damaging	Het
Serpinb9c	T	A	13: 33,150,279	Y288F	probably benign	Het
Setd1a	T	A	7: 127,786,194	M691K	probably benign	Het
Sftpc	T	C	14: 70,522,619	E66G	probably damaging	Het
Thnsl2	T	C	6: 71,141,319	T42A	probably benign	Het
Tram1	T	C	1: 13,569,975	D285G	probably benign	Het
Ttn	A	T	2: 76,736,240	I28103K	probably damaging	Het
Ttn	G	A	2: 76,845,030	P11137L	unknown	Het
Ttn	C	A	2: 76,896,759	V5821F	unknown	Het
Zcwpw1	T	G	5: 137,817,491	Y419D	possibly damaging	Het
Zfp407	G	A	18: 84,559,400	A1196V	possibly damaging	Het
Zfp446	T	A	7: 12,979,043	S103T	possibly damaging	Het

Other mutations in Usp38

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01151:Usp38	APN	8	81013840	missense	probably damaging	0.99
IGL01373:Usp38	APN	8	80990018	missense	possibly damaging	0.80
IGL02089:Usp38	APN	8	80985714	missense	possibly damaging	0.48
IGL02528:Usp38	APN	8	80993235	missense	probably damaging	1.00
IGL02538:Usp38	APN	8	80985558	missense	probably damaging	1.00
IGL02615:Usp38	APN	8	80985151	missense	probably benign	0.00
IGL03340:Usp38	APN	8	81012276	missense	probably damaging	1.00
P0033:Usp38	UTSW	8	80981896	missense	probably benign	0.12
R0313:Usp38	UTSW	8	80984442	nonsense	probably null
R0331:Usp38	UTSW	8	80995840	missense	probably benign	0.00
R0497:Usp38	UTSW	8	80984424	splice site	probably benign
R0594:Usp38	UTSW	8	81005366	missense	probably damaging	0.97
R0632:Usp38	UTSW	8	81014150	missense	probably benign	0.03
R1355:Usp38	UTSW	8	80985033	missense	possibly damaging	0.61
R1500:Usp38	UTSW	8	80995770	missense	probably damaging	1.00
R1566:Usp38	UTSW	8	80984803	missense	probably benign	0.00
R1880:Usp38	UTSW	8	81001066	missense	probably damaging	1.00
R4161:Usp38	UTSW	8	80993338	missense	probably damaging	1.00
R4176:Usp38	UTSW	8	80993299	missense	probably benign	0.33
R4882:Usp38	UTSW	8	80981977	nonsense	probably null
R5344:Usp38	UTSW	8	80985763	missense	possibly damaging	0.76
R5481:Usp38	UTSW	8	80993323	missense	possibly damaging	0.89
R5564:Usp38	UTSW	8	80985088	missense	probably damaging	0.96
R5897:Usp38	UTSW	8	81005453	missense	probably benign	0.03
R6111:Usp38	UTSW	8	81013922	missense	probably damaging	1.00
R6746:Usp38	UTSW	8	81014291	missense	possibly damaging	0.80
R6912:Usp38	UTSW	8	80993329	missense	probably damaging	1.00
R7051:Usp38	UTSW	8	81001121	missense	possibly damaging	0.50
R7483:Usp38	UTSW	8	81014561	start gained	probably benign
R7525:Usp38	UTSW	8	81014246	missense	probably damaging	1.00
R7565:Usp38	UTSW	8	80981972	missense	probably damaging	1.00
R7915:Usp38	UTSW	8	81001083	missense	probably damaging	1.00
R7934:Usp38	UTSW	8	80984448	missense	probably damaging	1.00
R8062:Usp38	UTSW	8	80984589	missense	probably damaging	1.00
R8340:Usp38	UTSW	8	80985402	missense	probably benign
R8514:Usp38	UTSW	8	80985717	missense	probably benign	0.01
R8919:Usp38	UTSW	8	80981850	missense	probably damaging	1.00
R9119:Usp38	UTSW	8	80984599	missense	probably damaging	1.00
R9664:Usp38	UTSW	8	81014535	start gained	probably benign
RF016:Usp38	UTSW	8	81013893	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GAATGTAGTCCAGGATGGCGAC -3'
(R):5'- TGGTTGGCTCCAAGTTCCTC -3'

Sequencing Primer
(F):5'- ATGGCGACGTCCTTCCTG -3'
(R):5'- AAGTTCCTCCCCGCCGG -3'

Posted On

2020-09-15