Mutagenetix > Incidental Mutation

Incidental Mutation 'R7988:Cmtm1'

651598

Institutional Source

Beutler Lab

Gene Symbol

Cmtm1

Ensembl Gene

ENSMUSG00000110430

Gene Name

CKLF-like MARVEL transmembrane domain containing 1

Synonyms

Cklfsf1, CHLFH1a, CKLFH1

MMRRC Submission

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.266) question?

Stock #

R7988 (G1)

Quality Score

111.008

Status

Validated

Chromosome

Chromosomal Location

104292622-104310145 bp(-) (GRCm38)

Type of Mutation

unclassified

DNA Base Change (assembly)

T to C at 104310142 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000132828 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000159039] [ENSMUST00000160596] [ENSMUST00000162616] [ENSMUST00000164175]

AlphaFold

B7ZP21

Predicted Effect

probably benign
Transcript: ENSMUST00000159039

SMART Domains

Protein: ENSMUSP00000124855
Gene: ENSMUSG00000110430

Domain	Start	End	E-Value	Type
low complexity region	7	27	N/A	INTRINSIC
internal_repeat_1	33	70	7.45e-12	PROSPERO
internal_repeat_2	34	74	9.92e-7	PROSPERO
internal_repeat_1	66	103	7.45e-12	PROSPERO
internal_repeat_2	122	162	9.92e-7	PROSPERO
transmembrane domain	190	212	N/A	INTRINSIC
transmembrane domain	227	246	N/A	INTRINSIC
transmembrane domain	253	275	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160596

SMART Domains

Protein: ENSMUSP00000124656
Gene: ENSMUSG00000110430

Domain	Start	End	E-Value	Type
low complexity region	7	27	N/A	INTRINSIC
internal_repeat_1	33	70	1.42e-11	PROSPERO
internal_repeat_2	34	74	1.79e-6	PROSPERO
internal_repeat_1	66	103	1.42e-11	PROSPERO
internal_repeat_2	122	162	1.79e-6	PROSPERO
transmembrane domain	262	284	N/A	INTRINSIC
transmembrane domain	289	311	N/A	INTRINSIC
transmembrane domain	315	334	N/A	INTRINSIC
transmembrane domain	341	363	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000162616

SMART Domains

Protein: ENSMUSP00000124800
Gene: ENSMUSG00000031876

Domain	Start	End	E-Value	Type
low complexity region	7	27	N/A	INTRINSIC
internal_repeat_1	33	70	1.42e-11	PROSPERO
internal_repeat_2	34	74	1.79e-6	PROSPERO
internal_repeat_1	66	103	1.42e-11	PROSPERO
internal_repeat_2	122	162	1.79e-6	PROSPERO
transmembrane domain	262	284	N/A	INTRINSIC
transmembrane domain	289	311	N/A	INTRINSIC
transmembrane domain	315	334	N/A	INTRINSIC
transmembrane domain	341	363	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000164175

SMART Domains

Protein: ENSMUSP00000132828
Gene: ENSMUSG00000110430

Domain	Start	End	E-Value	Type
low complexity region	7	27	N/A	INTRINSIC
internal_repeat_1	34	71	1.23e-5	PROSPERO
internal_repeat_1	100	137	1.23e-5	PROSPERO

Meta Mutation Damage Score

0.0846

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (59/59)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610030E20Rik	C	T	6: 72,347,652	T56M	probably damaging	Het
2010111I01Rik	A	G	13: 63,061,140	D357G	probably benign	Het
4932415D10Rik	T	C	10: 82,296,100	I359V	probably benign	Het
Adamtsl5	C	T	10: 80,345,538	S36N	probably benign	Het
Adgrf5	A	T	17: 43,439,813		probably benign	Het
Ago1	A	G	4: 126,460,417	F200S	probably damaging	Het
Akr1cl	T	C	1: 65,024,706	D108G	possibly damaging	Het
Arhgef3	A	T	14: 27,401,786	D468V	probably benign	Het
Aspn	T	C	13: 49,551,877	C72R	possibly damaging	Het
Baz2b	T	C	2: 59,962,141	T548A	possibly damaging	Het
Birc6	G	A	17: 74,599,373		probably null	Het
Btnl2	A	T	17: 34,358,275	T135S	possibly damaging	Het
Ccnl1	T	A	3: 65,957,861	I90F	possibly damaging	Het
Ccnt1	T	C	15: 98,565,143		probably null	Het
Cemip	C	A	7: 84,003,408		probably benign	Het
Cfap45	A	G	1: 172,529,934	D85G	probably damaging	Het
Cfap54	T	A	10: 92,902,079	D2319V	unknown	Het
Cma1	T	C	14: 55,944,532	M14V	possibly damaging	Het
Col27a1	A	G	4: 63,331,322	H1738R	unknown	Het
Colq	T	A	14: 31,553,837	D41V	probably damaging	Het
Cubn	T	C	2: 13,332,355	T2437A	probably benign	Het
Dnah14	A	G	1: 181,783,574	D3755G	probably damaging	Het
Eprs	A	G	1: 185,418,348	Y1349C	probably damaging	Het
Eps8	C	T	6: 137,528,571	R53Q	possibly damaging	Het
Fam196a	T	G	7: 134,917,698	K368Q	probably damaging	Het
Fbf1	T	C	11: 116,152,768	D405G	probably benign	Het
Fen1	C	T	19: 10,200,310	E257K	possibly damaging	Het
Gstm7	A	T	3: 107,926,955	M198K	possibly damaging	Het
Hook3	A	T	8: 26,073,647	S190T	probably benign	Het
Htra4	A	C	8: 25,030,510		probably null	Het
Ighv1-15	T	C	12: 114,657,496	I70V	probably benign	Het
Ikzf4	T	A	10: 128,634,455	N452Y	probably damaging	Het
Iqcf5	T	A	9: 106,515,821	N92K	possibly damaging	Het
Itk	A	G	11: 46,355,834	Y186H	probably damaging	Het
Klhdc10	T	C	6: 30,446,691	S282P	probably benign	Het
Klhl18	T	A	9: 110,476,509	E29V	possibly damaging	Het
Ky	T	C	9: 102,525,415	S140P	probably damaging	Het
Lmntd2	T	C	7: 141,213,637	E112G	unknown	Het
Lrrc36	C	A	8: 105,452,086	D304E	possibly damaging	Het
Macf1	A	T	4: 123,506,480	F674Y	probably damaging	Het
Notch1	C	T	2: 26,471,001	D1111N	probably benign	Het
Osbpl8	T	G	10: 111,272,080	N312K	possibly damaging	Het
Otogl	C	T	10: 107,895,776	C168Y	probably damaging	Het
Phldb2	T	G	16: 45,825,571	T171P	probably benign	Het
Ppef2	A	T	5: 92,238,982	F365L	probably benign	Het
Repin1	G	T	6: 48,597,345	E403*	probably null	Het
Ryr1	G	A	7: 29,096,171	T1105I	probably benign	Het
Sclt1	T	A	3: 41,663,454	*29L	probably null	Het
Scn11a	T	C	9: 119,765,437	K1297E	probably damaging	Het
Serpinb9c	T	A	13: 33,150,279	Y288F	probably benign	Het
Setd1a	T	A	7: 127,786,194	M691K	probably benign	Het
Sftpc	T	C	14: 70,522,619	E66G	probably damaging	Het
Thnsl2	T	C	6: 71,141,319	T42A	probably benign	Het
Tram1	T	C	1: 13,569,975	D285G	probably benign	Het
Ttn	A	T	2: 76,736,240	I28103K	probably damaging	Het
Ttn	G	A	2: 76,845,030	P11137L	unknown	Het
Ttn	C	A	2: 76,896,759	V5821F	unknown	Het
Usp38	T	A	8: 81,014,316	M41L	probably benign	Het
Zcwpw1	T	G	5: 137,817,491	Y419D	possibly damaging	Het
Zfp407	G	A	18: 84,559,400	A1196V	possibly damaging	Het
Zfp446	T	A	7: 12,979,043	S103T	possibly damaging	Het

Other mutations in Cmtm1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
Senilicus	UTSW	8	104309295	missense	possibly damaging	0.90
G1citation:Cmtm1	UTSW	8	104309702	frame shift	probably null
R2900:Cmtm1	UTSW	8	104309544	missense	possibly damaging	0.95
R4132:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R4615:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R4723:Cmtm1	UTSW	8	104293675	missense	probably damaging	0.96
R5277:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R5347:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R5364:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R5394:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R5403:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R5611:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R5715:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R5731:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R5773:Cmtm1	UTSW	8	104305176	missense	probably damaging	1.00
R6017:Cmtm1	UTSW	8	104310951	unclassified	probably benign
R6207:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R6313:Cmtm1	UTSW	8	104305163	missense	possibly damaging	0.81
R6528:Cmtm1	UTSW	8	104309295	missense	possibly damaging	0.90
R6817:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R6821:Cmtm1	UTSW	8	104309702	frame shift	probably null
R6822:Cmtm1	UTSW	8	104309702	frame shift	probably null
R7028:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R7128:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R7132:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R7816:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R7819:Cmtm1	UTSW	8	104309702	frame shift	probably null
R7841:Cmtm1	UTSW	8	104309476	missense	possibly damaging	0.55
R7963:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R8130:Cmtm1	UTSW	8	104309456	missense	unknown
R8152:Cmtm1	UTSW	8	104309941	missense	possibly damaging	0.83
R8439:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R8459:Cmtm1	UTSW	8	104309511	missense	possibly damaging	0.95
R8683:Cmtm1	UTSW	8	104309470	small deletion	probably benign
R8843:Cmtm1	UTSW	8	104309702	frame shift	probably null
R8860:Cmtm1	UTSW	8	104309702	frame shift	probably null
R8871:Cmtm1	UTSW	8	104309702	frame shift	probably null
R9093:Cmtm1	UTSW	8	104309702	frame shift	probably null
R9098:Cmtm1	UTSW	8	104309702	frame shift	probably null
R9528:Cmtm1	UTSW	8	104309470	small deletion	probably benign
RF041:Cmtm1	UTSW	8	104309470	small deletion	probably benign

Predicted Primers

PCR Primer
(F):5'- GTCGTAAAGTTAAGCGTCTGG -3'
(R):5'- GCCTCACTGCATATGGCTTG -3'

Sequencing Primer
(F):5'- AGTTAAGCGTCTGGACTCAC -3'
(R):5'- CATATGGCTTGGGGCTGGAATC -3'

Posted On

2020-09-15