Incidental Mutation 'R7993:Atp1a3'
ID 651864
Institutional Source Beutler Lab
Gene Symbol Atp1a3
Ensembl Gene ENSMUSG00000040907
Gene Name ATPase, Na+/K+ transporting, alpha 3 polypeptide
Synonyms Atpa-2
MMRRC Submission 046034-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7993 (G1)
Quality Score 225.009
Status Not validated
Chromosome 7
Chromosomal Location 24677592-24705383 bp(-) (GRCm39)
Type of Mutation critical splice acceptor site
DNA Base Change (assembly) T to C at 24700406 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000079691 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000080882] [ENSMUST00000080882] [ENSMUST00000080882] [ENSMUST00000102858] [ENSMUST00000102858] [ENSMUST00000102858] [ENSMUST00000196684] [ENSMUST00000196684] [ENSMUST00000196684]
AlphaFold Q6PIC6
Predicted Effect probably null
Transcript: ENSMUST00000080882
SMART Domains Protein: ENSMUSP00000079691
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 3 17 N/A INTRINSIC
Cation_ATPase_N 32 106 2.41e-22 SMART
Pfam:E1-E2_ATPase 125 356 6.3e-64 PFAM
Pfam:Hydrolase 360 719 2.6e-32 PFAM
Pfam:HAD 363 716 4.7e-18 PFAM
Pfam:Hydrolase_like2 416 511 5.7e-26 PFAM
Pfam:Cation_ATPase_C 789 998 3.5e-46 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000080882
SMART Domains Protein: ENSMUSP00000079691
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 3 17 N/A INTRINSIC
Cation_ATPase_N 32 106 2.41e-22 SMART
Pfam:E1-E2_ATPase 125 356 6.3e-64 PFAM
Pfam:Hydrolase 360 719 2.6e-32 PFAM
Pfam:HAD 363 716 4.7e-18 PFAM
Pfam:Hydrolase_like2 416 511 5.7e-26 PFAM
Pfam:Cation_ATPase_C 789 998 3.5e-46 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000080882
SMART Domains Protein: ENSMUSP00000079691
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 3 17 N/A INTRINSIC
Cation_ATPase_N 32 106 2.41e-22 SMART
Pfam:E1-E2_ATPase 125 356 6.3e-64 PFAM
Pfam:Hydrolase 360 719 2.6e-32 PFAM
Pfam:HAD 363 716 4.7e-18 PFAM
Pfam:Hydrolase_like2 416 511 5.7e-26 PFAM
Pfam:Cation_ATPase_C 789 998 3.5e-46 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000102858
SMART Domains Protein: ENSMUSP00000099922
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 3 17 N/A INTRINSIC
Cation_ATPase_N 32 106 2.41e-22 SMART
Pfam:E1-E2_ATPase 124 355 4.6e-60 PFAM
Pfam:Hydrolase 360 719 5.7e-20 PFAM
Pfam:HAD 363 716 4.5e-19 PFAM
Pfam:Cation_ATPase 416 511 5.1e-25 PFAM
Pfam:Cation_ATPase_C 789 998 1.4e-46 PFAM
low complexity region 1030 1047 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000102858
SMART Domains Protein: ENSMUSP00000099922
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 3 17 N/A INTRINSIC
Cation_ATPase_N 32 106 2.41e-22 SMART
Pfam:E1-E2_ATPase 124 355 4.6e-60 PFAM
Pfam:Hydrolase 360 719 5.7e-20 PFAM
Pfam:HAD 363 716 4.5e-19 PFAM
Pfam:Cation_ATPase 416 511 5.1e-25 PFAM
Pfam:Cation_ATPase_C 789 998 1.4e-46 PFAM
low complexity region 1030 1047 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000102858
SMART Domains Protein: ENSMUSP00000099922
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 3 17 N/A INTRINSIC
Cation_ATPase_N 32 106 2.41e-22 SMART
Pfam:E1-E2_ATPase 124 355 4.6e-60 PFAM
Pfam:Hydrolase 360 719 5.7e-20 PFAM
Pfam:HAD 363 716 4.5e-19 PFAM
Pfam:Cation_ATPase 416 511 5.1e-25 PFAM
Pfam:Cation_ATPase_C 789 998 1.4e-46 PFAM
low complexity region 1030 1047 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000196684
SMART Domains Protein: ENSMUSP00000143735
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 16 30 N/A INTRINSIC
Cation_ATPase_N 45 119 1.9e-26 SMART
Pfam:E1-E2_ATPase 137 368 4e-58 PFAM
Pfam:Hydrolase 373 732 3.8e-18 PFAM
Pfam:HAD 376 729 3.8e-17 PFAM
Pfam:Cation_ATPase 429 524 5.2e-23 PFAM
Pfam:Cation_ATPase_C 802 1011 2.5e-44 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000196684
SMART Domains Protein: ENSMUSP00000143735
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 16 30 N/A INTRINSIC
Cation_ATPase_N 45 119 1.9e-26 SMART
Pfam:E1-E2_ATPase 137 368 4e-58 PFAM
Pfam:Hydrolase 373 732 3.8e-18 PFAM
Pfam:HAD 376 729 3.8e-17 PFAM
Pfam:Cation_ATPase 429 524 5.2e-23 PFAM
Pfam:Cation_ATPase_C 802 1011 2.5e-44 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000196684
SMART Domains Protein: ENSMUSP00000143735
Gene: ENSMUSG00000040907

DomainStartEndE-ValueType
low complexity region 16 30 N/A INTRINSIC
Cation_ATPase_N 45 119 1.9e-26 SMART
Pfam:E1-E2_ATPase 137 368 4e-58 PFAM
Pfam:Hydrolase 373 732 3.8e-18 PFAM
Pfam:HAD 376 729 3.8e-17 PFAM
Pfam:Cation_ATPase 429 524 5.2e-23 PFAM
Pfam:Cation_ATPase_C 802 1011 2.5e-44 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.3%
Validation Efficiency 100% (69/69)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the family of P-type cation transport ATPases, and to the subfamily of Na+/K+ -ATPases. Na+/K+ -ATPase is an integral membrane protein responsible for establishing and maintaining the electrochemical gradients of Na and K ions across the plasma membrane. These gradients are essential for osmoregulation, for sodium-coupled transport of a variety of organic and inorganic molecules, and for electrical excitability of nerve and muscle. This enzyme is composed of two subunits, a large catalytic subunit (alpha) and a smaller glycoprotein subunit (beta). The catalytic subunit of Na+/K+ -ATPase is encoded by multiple genes. This gene encodes an alpha 3 subunit. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2012]
PHENOTYPE: Mice homozygous for a mutation in this gene display neonatal lethality. Heterozygous mice display hyperactivity, increased activity in responses to methamphetamine, and impaired spatial learning. Mice heterozygous for an ENU mutation exhibit convulsive and vestibular stress induced seizures. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcc2 T A 19: 43,803,231 (GRCm39) V689D possibly damaging Het
Adamts17 T C 7: 66,499,612 (GRCm39) V53A possibly damaging Het
Adcy9 T C 16: 4,235,866 (GRCm39) N515S probably damaging Het
Aoc1l3 T A 6: 48,964,542 (GRCm39) N183K possibly damaging Het
Atp1a2 A G 1: 172,118,878 (GRCm39) V88A possibly damaging Het
Baz2a T C 10: 127,961,491 (GRCm39) F1706L probably benign Het
Cacnb2 A C 2: 14,968,731 (GRCm39) N199T probably benign Het
Caskin1 T A 17: 24,718,279 (GRCm39) Y296* probably null Het
Cemip C A 7: 83,613,383 (GRCm39) G605V probably damaging Het
Ciart T A 3: 95,786,206 (GRCm39) K290* probably null Het
Cideb G T 14: 55,995,899 (GRCm39) probably benign Het
Copg2 A T 6: 30,793,097 (GRCm39) Y413N probably damaging Het
Csrp1 T A 1: 135,674,453 (GRCm39) probably null Het
Cyp2j8 C T 4: 96,335,456 (GRCm39) probably null Het
Dcbld1 T A 10: 52,137,884 (GRCm39) Y49* probably null Het
Dpep1 T C 8: 123,927,460 (GRCm39) V338A possibly damaging Het
Exoc2 A G 13: 31,090,713 (GRCm39) probably null Het
Fcho2 A T 13: 98,888,524 (GRCm39) probably null Het
Foxd3 C T 4: 99,544,841 (GRCm39) probably benign Het
Gabbr2 C T 4: 46,736,349 (GRCm39) probably null Het
Gipc3 T C 10: 81,173,805 (GRCm39) D269G probably damaging Het
Gm4861 G A 3: 137,256,417 (GRCm39) T63M probably damaging Het
Hmga1b C A 11: 120,653,833 (GRCm39) A40E probably damaging Het
Hydin T A 8: 111,306,264 (GRCm39) M3889K probably benign Het
Inhca T A 9: 103,140,332 (GRCm39) K462N probably benign Het
Klk14 T A 7: 43,344,367 (GRCm39) M226K probably benign Het
Liph T G 16: 21,777,562 (GRCm39) M413L probably benign Het
Lrrc37a T C 11: 103,348,787 (GRCm39) D2636G unknown Het
Lrrk1 G A 7: 65,912,202 (GRCm39) T1786M probably benign Het
Map1a A G 2: 121,135,057 (GRCm39) S1958G possibly damaging Het
Msto1 A G 3: 88,817,481 (GRCm39) F484S probably benign Het
Muc2 C T 7: 141,308,173 (GRCm39) H890Y Het
Nectin3 T C 16: 46,279,184 (GRCm39) I265V probably benign Het
Nectin4 C T 1: 171,211,322 (GRCm39) T282I probably damaging Het
Nfat5 T A 8: 108,082,134 (GRCm39) probably null Het
Nsmaf T C 4: 6,398,647 (GRCm39) D819G probably benign Het
Or8b8 A T 9: 37,808,633 (GRCm39) probably benign Het
Pcdhb1 A T 18: 37,400,044 (GRCm39) D665V probably damaging Het
Pkd1l1 T C 11: 8,895,262 (GRCm39) D616G Het
Plppr2 A T 9: 21,858,258 (GRCm39) H286L probably damaging Het
Polrmt T C 10: 79,572,085 (GRCm39) T1203A probably damaging Het
Ppm1d T A 11: 85,217,777 (GRCm39) V180E probably damaging Het
Ppp1r18 T A 17: 36,184,718 (GRCm39) I551N probably benign Het
Psg28 C T 7: 18,160,401 (GRCm39) C265Y possibly damaging Het
Psmc1 A G 12: 100,081,824 (GRCm39) D142G probably benign Het
Rabgap1l G T 1: 160,528,424 (GRCm39) A394E probably damaging Het
Rbm48 G A 5: 3,640,470 (GRCm39) P303L probably benign Het
Rnf167 T C 11: 70,540,821 (GRCm39) V185A probably benign Het
Ros1 T A 10: 51,999,443 (GRCm39) Q1169L probably benign Het
Rrp1b A G 17: 32,277,541 (GRCm39) D607G probably damaging Het
Scamp1 A G 13: 94,366,294 (GRCm39) Y134H probably damaging Het
Scfd1 G A 12: 51,492,490 (GRCm39) E600K probably damaging Het
Scn3b A G 9: 40,193,840 (GRCm39) E189G possibly damaging Het
Scn4b G T 9: 45,059,007 (GRCm39) V93L probably benign Het
Serpina3i A T 12: 104,231,407 (GRCm39) T15S possibly damaging Het
Slc2a13 A T 15: 91,296,356 (GRCm39) C319* probably null Het
Tdrd1 A G 19: 56,854,437 (GRCm39) probably null Het
Tep1 T A 14: 51,067,710 (GRCm39) I2169F probably benign Het
Tm4sf19 A G 16: 32,226,458 (GRCm39) D124G possibly damaging Het
Trim2 T C 3: 84,098,026 (GRCm39) Y434C probably damaging Het
Usp34 T A 11: 23,327,622 (GRCm39) S1056T Het
Vmn1r230 T A 17: 21,067,312 (GRCm39) M167K probably benign Het
Vmn2r14 T A 5: 109,363,862 (GRCm39) M685L probably benign Het
Zfhx4 T A 3: 5,478,047 (GRCm39) V3554D probably damaging Het
Zfp1010 C T 2: 176,957,015 (GRCm39) G161D probably damaging Het
Zfp458 A G 13: 67,405,234 (GRCm39) S402P probably damaging Het
Zfp462 C A 4: 55,011,907 (GRCm39) A1291E probably damaging Het
Zmat5 G A 11: 4,672,379 (GRCm39) probably benign Het
Znfx1 C A 2: 166,897,857 (GRCm39) E356* probably null Het
Zswim5 A G 4: 116,808,291 (GRCm39) T292A probably benign Het
Other mutations in Atp1a3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02129:Atp1a3 APN 7 24,696,711 (GRCm39) missense probably damaging 0.98
IGL02736:Atp1a3 APN 7 24,679,534 (GRCm39) missense probably damaging 1.00
IGL02738:Atp1a3 APN 7 24,689,901 (GRCm39) missense possibly damaging 0.86
IGL02806:Atp1a3 APN 7 24,681,297 (GRCm39) missense probably damaging 1.00
borah UTSW 7 24,693,994 (GRCm39) missense probably damaging 1.00
Clonic UTSW 7 24,687,410 (GRCm39) missense probably benign 0.37
Littlewolf UTSW 7 24,681,216 (GRCm39) missense probably damaging 1.00
R0003:Atp1a3 UTSW 7 24,688,989 (GRCm39) splice site probably benign
R0254:Atp1a3 UTSW 7 24,680,937 (GRCm39) splice site probably benign
R0420:Atp1a3 UTSW 7 24,680,052 (GRCm39) missense probably benign
R0437:Atp1a3 UTSW 7 24,698,392 (GRCm39) missense probably benign 0.36
R0666:Atp1a3 UTSW 7 24,689,974 (GRCm39) missense probably benign 0.01
R0932:Atp1a3 UTSW 7 24,687,401 (GRCm39) critical splice donor site probably null
R1586:Atp1a3 UTSW 7 24,678,808 (GRCm39) missense probably damaging 0.97
R1981:Atp1a3 UTSW 7 24,700,400 (GRCm39) missense probably benign 0.19
R2105:Atp1a3 UTSW 7 24,689,278 (GRCm39) missense probably damaging 1.00
R3076:Atp1a3 UTSW 7 24,679,498 (GRCm39) missense possibly damaging 0.48
R3110:Atp1a3 UTSW 7 24,694,119 (GRCm39) missense probably damaging 1.00
R3112:Atp1a3 UTSW 7 24,694,119 (GRCm39) missense probably damaging 1.00
R4223:Atp1a3 UTSW 7 24,700,355 (GRCm39) missense probably benign 0.09
R4327:Atp1a3 UTSW 7 24,687,056 (GRCm39) intron probably benign
R4598:Atp1a3 UTSW 7 24,678,766 (GRCm39) missense probably damaging 0.99
R4626:Atp1a3 UTSW 7 24,698,193 (GRCm39) missense possibly damaging 0.75
R4789:Atp1a3 UTSW 7 24,698,389 (GRCm39) missense probably damaging 1.00
R4963:Atp1a3 UTSW 7 24,694,051 (GRCm39) missense probably damaging 0.97
R5243:Atp1a3 UTSW 7 24,693,994 (GRCm39) missense probably damaging 1.00
R5294:Atp1a3 UTSW 7 24,687,473 (GRCm39) missense probably damaging 0.98
R5668:Atp1a3 UTSW 7 24,678,294 (GRCm39) intron probably benign
R5704:Atp1a3 UTSW 7 24,696,736 (GRCm39) missense probably damaging 0.98
R5870:Atp1a3 UTSW 7 24,697,003 (GRCm39) missense probably benign 0.03
R5934:Atp1a3 UTSW 7 24,678,299 (GRCm39) intron probably benign
R6183:Atp1a3 UTSW 7 24,681,177 (GRCm39) missense probably damaging 1.00
R6492:Atp1a3 UTSW 7 24,678,729 (GRCm39) missense probably damaging 1.00
R6996:Atp1a3 UTSW 7 24,697,051 (GRCm39) missense probably damaging 1.00
R7165:Atp1a3 UTSW 7 24,678,390 (GRCm39) missense probably benign 0.13
R7229:Atp1a3 UTSW 7 24,687,410 (GRCm39) missense probably benign 0.37
R7239:Atp1a3 UTSW 7 24,700,129 (GRCm39) missense probably damaging 1.00
R7301:Atp1a3 UTSW 7 24,689,940 (GRCm39) missense probably benign 0.00
R7330:Atp1a3 UTSW 7 24,700,577 (GRCm39) nonsense probably null
R7348:Atp1a3 UTSW 7 24,678,251 (GRCm39) missense unknown
R7432:Atp1a3 UTSW 7 24,705,300 (GRCm39) unclassified probably benign
R7490:Atp1a3 UTSW 7 24,686,895 (GRCm39) missense probably damaging 1.00
R7556:Atp1a3 UTSW 7 24,680,991 (GRCm39) missense probably benign 0.02
R7860:Atp1a3 UTSW 7 24,681,216 (GRCm39) missense probably damaging 1.00
R7861:Atp1a3 UTSW 7 24,700,573 (GRCm39) missense unknown
R8002:Atp1a3 UTSW 7 24,700,096 (GRCm39) missense probably damaging 1.00
R8010:Atp1a3 UTSW 7 24,680,070 (GRCm39) missense possibly damaging 0.90
R8430:Atp1a3 UTSW 7 24,698,437 (GRCm39) missense probably damaging 1.00
R8780:Atp1a3 UTSW 7 24,680,979 (GRCm39) missense probably damaging 0.96
R8837:Atp1a3 UTSW 7 24,677,980 (GRCm39) missense probably damaging 1.00
R9031:Atp1a3 UTSW 7 24,689,212 (GRCm39) critical splice donor site probably null
R9220:Atp1a3 UTSW 7 24,696,625 (GRCm39) nonsense probably null
R9259:Atp1a3 UTSW 7 24,696,956 (GRCm39) missense probably damaging 1.00
R9600:Atp1a3 UTSW 7 24,700,027 (GRCm39) missense probably benign 0.00
Z1176:Atp1a3 UTSW 7 24,698,113 (GRCm39) missense probably benign 0.00
Z1177:Atp1a3 UTSW 7 24,679,544 (GRCm39) missense probably benign 0.02
Predicted Primers PCR Primer
(F):5'- GGGCTCATATAGAAACCTTCCCTG -3'
(R):5'- TGGTGGTTCTGACAGCTACC -3'

Sequencing Primer
(F):5'- TTCCCTGAGAAGCCCTGG -3'
(R):5'- GGTTCTGACAGCTACCGTGTC -3'
Posted On 2020-09-15