Mutagenetix > Incidental Mutation

Incidental Mutation 'R7993:Liph'

651899

Institutional Source

Beutler Lab

Gene Symbol

Liph

Ensembl Gene

ENSMUSG00000044626

Gene Name

lipase, member H

Synonyms

C130037N08Rik, Lpdlr, PLA1B, mPA-PLA1, LPDLR, D16Wsu119e

MMRRC Submission

046034-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7993 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

21772567-21814408 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 21777562 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 413 (M413L)

Ref Sequence

ENSEMBL: ENSMUSP00000062310 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060673] [ENSMUST00000074230] [ENSMUST00000231682] [ENSMUST00000231766]

AlphaFold

Q8CIV3

Predicted Effect

probably benign
Transcript: ENSMUST00000060673
AA Change: M413L

PolyPhen 2 Score 0.025 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000062310
Gene: ENSMUSG00000044626
AA Change: M413L

Domain	Start	End	E-Value	Type
Pfam:Lipase	11	326	6.8e-82	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000074230
AA Change: M383L

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000073853
Gene: ENSMUSG00000044626
AA Change: M383L

Domain	Start	End	E-Value	Type
Pfam:Lipase	15	214	1.5e-45	PFAM
Pfam:Abhydrolase_6	73	296	2.3e-6	PFAM
Pfam:Lipase	209	296	1.7e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000231682

Predicted Effect

probably benign
Transcript: ENSMUST00000231766
AA Change: M411L

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.3%

Validation Efficiency

100% (69/69)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a membrane-bound member of the mammalian triglyceride lipase family. It catalyzes the production of 2-acyl lysophosphatidic acid (LPA), which is a lipid mediator with diverse biological properties that include platelet aggregation, smooth muscle contraction, and stimulation of cell proliferation and motility. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit wavy vibrissae and wavy and matted coats associated with impaired inner rooth sheath formation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc2	T	A	19: 43,803,231 (GRCm39)	V689D	possibly damaging	Het
Adamts17	T	C	7: 66,499,612 (GRCm39)	V53A	possibly damaging	Het
Adcy9	T	C	16: 4,235,866 (GRCm39)	N515S	probably damaging	Het
Aoc1l3	T	A	6: 48,964,542 (GRCm39)	N183K	possibly damaging	Het
Atp1a2	A	G	1: 172,118,878 (GRCm39)	V88A	possibly damaging	Het
Atp1a3	T	C	7: 24,700,406 (GRCm39)		probably null	Het
Baz2a	T	C	10: 127,961,491 (GRCm39)	F1706L	probably benign	Het
Cacnb2	A	C	2: 14,968,731 (GRCm39)	N199T	probably benign	Het
Caskin1	T	A	17: 24,718,279 (GRCm39)	Y296*	probably null	Het
Cemip	C	A	7: 83,613,383 (GRCm39)	G605V	probably damaging	Het
Ciart	T	A	3: 95,786,206 (GRCm39)	K290*	probably null	Het
Cideb	G	T	14: 55,995,899 (GRCm39)		probably benign	Het
Copg2	A	T	6: 30,793,097 (GRCm39)	Y413N	probably damaging	Het
Csrp1	T	A	1: 135,674,453 (GRCm39)		probably null	Het
Cyp2j8	C	T	4: 96,335,456 (GRCm39)		probably null	Het
Dcbld1	T	A	10: 52,137,884 (GRCm39)	Y49*	probably null	Het
Dpep1	T	C	8: 123,927,460 (GRCm39)	V338A	possibly damaging	Het
Exoc2	A	G	13: 31,090,713 (GRCm39)		probably null	Het
Fcho2	A	T	13: 98,888,524 (GRCm39)		probably null	Het
Foxd3	C	T	4: 99,544,841 (GRCm39)		probably benign	Het
Gabbr2	C	T	4: 46,736,349 (GRCm39)		probably null	Het
Gipc3	T	C	10: 81,173,805 (GRCm39)	D269G	probably damaging	Het
Gm4861	G	A	3: 137,256,417 (GRCm39)	T63M	probably damaging	Het
Hmga1b	C	A	11: 120,653,833 (GRCm39)	A40E	probably damaging	Het
Hydin	T	A	8: 111,306,264 (GRCm39)	M3889K	probably benign	Het
Inhca	T	A	9: 103,140,332 (GRCm39)	K462N	probably benign	Het
Klk14	T	A	7: 43,344,367 (GRCm39)	M226K	probably benign	Het
Lrrc37a	T	C	11: 103,348,787 (GRCm39)	D2636G	unknown	Het
Lrrk1	G	A	7: 65,912,202 (GRCm39)	T1786M	probably benign	Het
Map1a	A	G	2: 121,135,057 (GRCm39)	S1958G	possibly damaging	Het
Msto1	A	G	3: 88,817,481 (GRCm39)	F484S	probably benign	Het
Muc2	C	T	7: 141,308,173 (GRCm39)	H890Y		Het
Nectin3	T	C	16: 46,279,184 (GRCm39)	I265V	probably benign	Het
Nectin4	C	T	1: 171,211,322 (GRCm39)	T282I	probably damaging	Het
Nfat5	T	A	8: 108,082,134 (GRCm39)		probably null	Het
Nsmaf	T	C	4: 6,398,647 (GRCm39)	D819G	probably benign	Het
Or8b8	A	T	9: 37,808,633 (GRCm39)		probably benign	Het
Pcdhb1	A	T	18: 37,400,044 (GRCm39)	D665V	probably damaging	Het
Pkd1l1	T	C	11: 8,895,262 (GRCm39)	D616G		Het
Plppr2	A	T	9: 21,858,258 (GRCm39)	H286L	probably damaging	Het
Polrmt	T	C	10: 79,572,085 (GRCm39)	T1203A	probably damaging	Het
Ppm1d	T	A	11: 85,217,777 (GRCm39)	V180E	probably damaging	Het
Ppp1r18	T	A	17: 36,184,718 (GRCm39)	I551N	probably benign	Het
Psg28	C	T	7: 18,160,401 (GRCm39)	C265Y	possibly damaging	Het
Psmc1	A	G	12: 100,081,824 (GRCm39)	D142G	probably benign	Het
Rabgap1l	G	T	1: 160,528,424 (GRCm39)	A394E	probably damaging	Het
Rbm48	G	A	5: 3,640,470 (GRCm39)	P303L	probably benign	Het
Rnf167	T	C	11: 70,540,821 (GRCm39)	V185A	probably benign	Het
Ros1	T	A	10: 51,999,443 (GRCm39)	Q1169L	probably benign	Het
Rrp1b	A	G	17: 32,277,541 (GRCm39)	D607G	probably damaging	Het
Scamp1	A	G	13: 94,366,294 (GRCm39)	Y134H	probably damaging	Het
Scfd1	G	A	12: 51,492,490 (GRCm39)	E600K	probably damaging	Het
Scn3b	A	G	9: 40,193,840 (GRCm39)	E189G	possibly damaging	Het
Scn4b	G	T	9: 45,059,007 (GRCm39)	V93L	probably benign	Het
Serpina3i	A	T	12: 104,231,407 (GRCm39)	T15S	possibly damaging	Het
Slc2a13	A	T	15: 91,296,356 (GRCm39)	C319*	probably null	Het
Tdrd1	A	G	19: 56,854,437 (GRCm39)		probably null	Het
Tep1	T	A	14: 51,067,710 (GRCm39)	I2169F	probably benign	Het
Tm4sf19	A	G	16: 32,226,458 (GRCm39)	D124G	possibly damaging	Het
Trim2	T	C	3: 84,098,026 (GRCm39)	Y434C	probably damaging	Het
Usp34	T	A	11: 23,327,622 (GRCm39)	S1056T		Het
Vmn1r230	T	A	17: 21,067,312 (GRCm39)	M167K	probably benign	Het
Vmn2r14	T	A	5: 109,363,862 (GRCm39)	M685L	probably benign	Het
Zfhx4	T	A	3: 5,478,047 (GRCm39)	V3554D	probably damaging	Het
Zfp1010	C	T	2: 176,957,015 (GRCm39)	G161D	probably damaging	Het
Zfp458	A	G	13: 67,405,234 (GRCm39)	S402P	probably damaging	Het
Zfp462	C	A	4: 55,011,907 (GRCm39)	A1291E	probably damaging	Het
Zmat5	G	A	11: 4,672,379 (GRCm39)		probably benign	Het
Znfx1	C	A	2: 166,897,857 (GRCm39)	E356*	probably null	Het
Zswim5	A	G	4: 116,808,291 (GRCm39)	T292A	probably benign	Het

Other mutations in Liph

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00571:Liph	APN	16	21,786,890 (GRCm39)	missense	probably damaging	1.00
babyback	UTSW	16	21,802,707 (GRCm39)	missense	probably damaging	0.97
PIT4131001:Liph	UTSW	16	21,814,119 (GRCm39)	start codon destroyed	probably null	0.59
R0004:Liph	UTSW	16	21,802,944 (GRCm39)	nonsense	probably null
R0045:Liph	UTSW	16	21,786,803 (GRCm39)	missense	probably damaging	1.00
R0045:Liph	UTSW	16	21,786,803 (GRCm39)	missense	probably damaging	1.00
R0348:Liph	UTSW	16	21,786,730 (GRCm39)	splice site	probably null
R0689:Liph	UTSW	16	21,786,818 (GRCm39)	missense	probably damaging	1.00
R0715:Liph	UTSW	16	21,814,100 (GRCm39)	missense	probably benign	0.05
R1104:Liph	UTSW	16	21,802,898 (GRCm39)	missense	possibly damaging	0.82
R1779:Liph	UTSW	16	21,786,800 (GRCm39)	missense	probably benign	0.01
R2323:Liph	UTSW	16	21,802,754 (GRCm39)	missense	probably damaging	0.99
R3913:Liph	UTSW	16	21,781,009 (GRCm39)	splice site	probably benign
R4402:Liph	UTSW	16	21,795,000 (GRCm39)	missense	probably damaging	1.00
R4454:Liph	UTSW	16	21,803,018 (GRCm39)	missense	probably benign	0.11
R4672:Liph	UTSW	16	21,802,806 (GRCm39)	missense	probably benign	0.14
R4681:Liph	UTSW	16	21,802,777 (GRCm39)	missense	probably benign	0.02
R5111:Liph	UTSW	16	21,802,820 (GRCm39)	missense	probably damaging	1.00
R5135:Liph	UTSW	16	21,774,915 (GRCm39)	nonsense	probably null
R5235:Liph	UTSW	16	21,802,785 (GRCm39)	missense	probably damaging	1.00
R5642:Liph	UTSW	16	21,784,745 (GRCm39)	missense	possibly damaging	0.61
R5810:Liph	UTSW	16	21,786,860 (GRCm39)	missense	probably damaging	1.00
R6188:Liph	UTSW	16	21,803,018 (GRCm39)	missense	probably benign	0.11
R6557:Liph	UTSW	16	21,802,670 (GRCm39)	missense	possibly damaging	0.60
R6734:Liph	UTSW	16	21,802,707 (GRCm39)	missense	probably damaging	0.97
R7011:Liph	UTSW	16	21,802,847 (GRCm39)	missense	probably damaging	0.98
R7038:Liph	UTSW	16	21,795,009 (GRCm39)	missense	probably damaging	1.00
R7178:Liph	UTSW	16	21,795,078 (GRCm39)	missense	probably damaging	1.00
R7185:Liph	UTSW	16	21,814,089 (GRCm39)	missense	probably benign	0.00
R7198:Liph	UTSW	16	21,784,772 (GRCm39)	missense	probably damaging	1.00
R7775:Liph	UTSW	16	21,777,664 (GRCm39)	missense	probably damaging	1.00
R7832:Liph	UTSW	16	21,780,986 (GRCm39)	missense	probably benign	0.01
R8264:Liph	UTSW	16	21,802,721 (GRCm39)	missense	possibly damaging	0.94
R8551:Liph	UTSW	16	21,800,158 (GRCm39)	missense	probably damaging	1.00
R9311:Liph	UTSW	16	21,802,680 (GRCm39)	missense	probably benign	0.01
R9311:Liph	UTSW	16	21,774,913 (GRCm39)	missense	probably damaging	1.00
R9794:Liph	UTSW	16	21,774,862 (GRCm39)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- ACTCTGGTCAACTCTGCTCG -3'
(R):5'- GAAGCTGCTTTCTCTCATTAGTG -3'

Sequencing Primer
(F):5'- TGCTGGGATTTAAACTCAGGACC -3'
(R):5'- GTCATATGTATATATGACT -3'

Posted On

2020-09-15