Mutagenetix > Incidental Mutation

Incidental Mutation 'R8408:Gnl2'

652520

Institutional Source

Beutler Lab

Gene Symbol

Gnl2

Ensembl Gene

ENSMUSG00000028869

Gene Name

guanine nucleotide binding protein nucleolar 2

Synonyms

Ngp-1

MMRRC Submission

067815-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.965) question?

Stock #

R8408 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

124920866-124949175 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 124938082 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 287 (N287K)

Ref Sequence

ENSEMBL: ENSMUSP00000030684 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030684]

AlphaFold

Q99LH1

Predicted Effect

probably damaging
Transcript: ENSMUST00000030684
AA Change: N287K

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000030684
Gene: ENSMUSG00000028869
AA Change: N287K

Domain	Start	End	E-Value	Type
Pfam:NGP1NT	43	174	1.2e-51	PFAM
SCOP:d1egaa1	178	261	8e-3	SMART
Pfam:FeoB_N	311	398	3.1e-6	PFAM
Pfam:MMR_HSR1	312	432	3.4e-13	PFAM
low complexity region	480	500	N/A	INTRINSIC
low complexity region	551	579	N/A	INTRINSIC
low complexity region	679	687	N/A	INTRINSIC
low complexity region	700	710	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	A	G	12: 71,236,356 (GRCm39)	T1236A	possibly damaging	Het
9930111J21Rik1	A	T	11: 48,838,829 (GRCm39)	M586K	probably damaging	Het
Adamts4	T	C	1: 171,080,314 (GRCm39)	V289A	possibly damaging	Het
Ankrd44	A	T	1: 54,762,257 (GRCm39)	D522E	probably benign	Het
Asb14	A	G	14: 26,637,067 (GRCm39)	Y603C	probably damaging	Het
Bcl7b	A	G	5: 135,197,308 (GRCm39)		probably benign	Het
Cd5	T	C	19: 10,700,469 (GRCm39)	K345R	possibly damaging	Het
Celsr3	T	C	9: 108,708,988 (GRCm39)	F1278S	probably damaging	Het
Cndp1	T	A	18: 84,650,049 (GRCm39)	T215S	possibly damaging	Het
Crygb	T	G	1: 65,119,709 (GRCm39)	R90S	probably damaging	Het
Dlg4	T	A	11: 69,933,078 (GRCm39)	F555I	possibly damaging	Het
Dnah3	C	T	7: 119,551,728 (GRCm39)	V2864M	probably damaging	Het
Dnttip2	A	G	3: 122,070,351 (GRCm39)	E522G	probably damaging	Het
Ercc4	G	C	16: 12,948,001 (GRCm39)	R406P	probably benign	Het
Foxp1	G	A	6: 98,922,543 (GRCm39)	P430S	unknown	Het
Galnt1	A	G	18: 24,400,628 (GRCm39)	T245A	probably benign	Het
Jcad	C	A	18: 4,649,402 (GRCm39)	A91E	possibly damaging	Het
Kat6a	G	A	8: 23,352,275 (GRCm39)	V20I	probably damaging	Het
Kcnb2	A	G	1: 15,781,777 (GRCm39)	N883S	probably damaging	Het
Lrch3	A	T	16: 32,775,750 (GRCm39)	R205S	probably damaging	Het
Lrr1	A	G	12: 69,215,825 (GRCm39)	T66A	probably benign	Het
Lrrc37a	T	A	11: 103,351,635 (GRCm39)	I2569F	unknown	Het
Maip1	A	T	1: 57,449,102 (GRCm39)	Q161L	probably damaging	Het
Neb	T	C	2: 52,047,923 (GRCm39)	E6699G	probably benign	Het
Nup205	A	G	6: 35,202,182 (GRCm39)	R1305G	probably damaging	Het
Or1e19	T	A	11: 73,316,794 (GRCm39)	N5I	probably damaging	Het
Or5ac21	A	T	16: 59,124,418 (GRCm39)	R301*	probably null	Het
Pate1	G	A	9: 35,596,418 (GRCm39)	R116W	probably damaging	Het
Pcsk5	T	G	19: 17,410,809 (GRCm39)	E1861A	probably benign	Het
Peg10	C	CTCA	6: 4,756,453 (GRCm39)		probably benign	Het
Per1	A	T	11: 68,999,953 (GRCm39)	D1215V	possibly damaging	Het
Phactr2	A	G	10: 13,129,570 (GRCm39)	S233P	probably damaging	Het
Pramel28	A	G	4: 143,692,212 (GRCm39)	V263A	probably benign	Het
Rgsl1	T	A	1: 153,701,435 (GRCm39)	N340Y	possibly damaging	Het
Rhot1	C	T	11: 80,114,786 (GRCm39)	P65S	probably damaging	Het
Scrn2	T	C	11: 96,921,869 (GRCm39)	L113P	probably damaging	Het
Sema6a	T	C	18: 47,381,958 (GRCm39)	K863R	probably benign	Het
Slc15a1	A	G	14: 121,715,528 (GRCm39)	V337A	possibly damaging	Het
Slc25a1	T	C	16: 17,743,720 (GRCm39)	D298G	probably benign	Het
Slc25a22	G	A	7: 141,011,737 (GRCm39)	P168S	probably benign	Het
Slc29a4	A	T	5: 142,691,109 (GRCm39)		probably null	Het
Slc35d1	T	C	4: 103,047,007 (GRCm39)	T264A		Het
Spice1	T	C	16: 44,205,060 (GRCm39)	S789P	probably damaging	Het
Sprr2b	CTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCC	CTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCC	3: 92,224,826 (GRCm39)		probably benign	Het
Tectb	T	C	19: 55,178,099 (GRCm39)		probably null	Het
Ttn	T	A	2: 76,544,810 (GRCm39)	Y32764F	probably damaging	Het
Utrn	T	G	10: 12,545,887 (GRCm39)	S1684R	possibly damaging	Het
Zic1	G	T	9: 91,246,847 (GRCm39)	A75E	probably damaging	Het
Zswim4	A	G	8: 84,939,014 (GRCm39)	V956A	possibly damaging	Het

Other mutations in Gnl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01977:Gnl2	APN	4	124,941,405 (GRCm39)	splice site	probably null
IGL02536:Gnl2	APN	4	124,946,401 (GRCm39)	nonsense	probably null
IGL03358:Gnl2	APN	4	124,946,387 (GRCm39)	missense	probably damaging	1.00
PIT4283001:Gnl2	UTSW	4	124,940,099 (GRCm39)	missense	probably damaging	1.00
R0377:Gnl2	UTSW	4	124,940,175 (GRCm39)	splice site	probably benign
R0419:Gnl2	UTSW	4	124,947,320 (GRCm39)	missense	probably benign	0.00
R0975:Gnl2	UTSW	4	124,942,171 (GRCm39)	missense	probably damaging	0.99
R1529:Gnl2	UTSW	4	124,940,099 (GRCm39)	missense	probably damaging	1.00
R1550:Gnl2	UTSW	4	124,938,027 (GRCm39)	missense	probably damaging	1.00
R1942:Gnl2	UTSW	4	124,923,957 (GRCm39)	missense	probably benign	0.01
R2095:Gnl2	UTSW	4	124,928,111 (GRCm39)	missense	probably damaging	1.00
R2125:Gnl2	UTSW	4	124,947,278 (GRCm39)	missense	probably benign	0.01
R3712:Gnl2	UTSW	4	124,940,067 (GRCm39)	missense	probably damaging	0.98
R3781:Gnl2	UTSW	4	124,931,399 (GRCm39)	missense	probably damaging	0.99
R4656:Gnl2	UTSW	4	124,934,790 (GRCm39)	nonsense	probably null
R4676:Gnl2	UTSW	4	124,947,266 (GRCm39)	missense	possibly damaging	0.83
R4710:Gnl2	UTSW	4	124,947,252 (GRCm39)	missense	probably benign	0.01
R4734:Gnl2	UTSW	4	124,934,811 (GRCm39)	missense	probably benign
R4916:Gnl2	UTSW	4	124,937,485 (GRCm39)	missense	probably damaging	1.00
R5106:Gnl2	UTSW	4	124,947,329 (GRCm39)	critical splice donor site	probably null
R5310:Gnl2	UTSW	4	124,946,633 (GRCm39)	missense	probably benign	0.00
R5506:Gnl2	UTSW	4	124,949,158 (GRCm39)	utr 3 prime	probably benign
R5967:Gnl2	UTSW	4	124,934,823 (GRCm39)	missense	probably benign	0.00
R6184:Gnl2	UTSW	4	124,948,022 (GRCm39)	critical splice donor site	probably null
R6395:Gnl2	UTSW	4	124,940,058 (GRCm39)	missense	probably damaging	0.99
R6432:Gnl2	UTSW	4	124,946,353 (GRCm39)	missense	possibly damaging	0.86
R6672:Gnl2	UTSW	4	124,942,186 (GRCm39)	missense	probably damaging	1.00
R7657:Gnl2	UTSW	4	124,923,951 (GRCm39)	missense	probably benign	0.00
R8387:Gnl2	UTSW	4	124,949,127 (GRCm39)	makesense	probably null
R9083:Gnl2	UTSW	4	124,941,357 (GRCm39)	missense	probably damaging	1.00
R9276:Gnl2	UTSW	4	124,947,250 (GRCm39)	missense	possibly damaging	0.83
RF003:Gnl2	UTSW	4	124,937,518 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GCAACGCTGTATTTGAAGCC -3'
(R):5'- AGACCCTTCCTGATCCAGAG -3'

Sequencing Primer
(F):5'- ACGCTGTATTTGAAGCCATCCAG -3'
(R):5'- GAGACGAGATTTCATTATGTAGCCC -3'

Posted On

2020-10-20