Incidental Mutation 'R8408:Tectb'
| ID |
652558 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Tectb
|
| Ensembl Gene |
ENSMUSG00000024979 |
| Gene Name |
tectorin beta |
| Synonyms |
Tctnb, [b]-tectorin |
| MMRRC Submission |
067815-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.071)
|
| Stock # |
R8408 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
19 |
| Chromosomal Location |
55169165-55184745 bp(+) (GRCm39) |
| Type of Mutation |
critical splice donor site (2 bp from exon) |
| DNA Base Change (assembly) |
T to C
at 55178099 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000025936
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000025936]
[ENSMUST00000120936]
[ENSMUST00000154886]
|
| AlphaFold |
O08524 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000025936
|
| SMART Domains |
Protein: ENSMUSP00000025936
Gene: ENSMUSG00000024979
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
17 |
N/A |
INTRINSIC |
|
ZP
|
31 |
283 |
3.47e-50 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000120936
|
| SMART Domains |
Protein: ENSMUSP00000113805
Gene: ENSMUSG00000024979
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
17 |
N/A |
INTRINSIC |
|
ZP
|
31 |
293 |
1.9e-47 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000124545
|
| SMART Domains |
Protein: ENSMUSP00000117645
Gene: ENSMUSG00000024979
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Zona_pellucida
|
3 |
116 |
5.9e-27 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000154886
|
| SMART Domains |
Protein: ENSMUSP00000121767
Gene: ENSMUSG00000024979
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
17 |
N/A |
INTRINSIC |
|
ZP
|
31 |
196 |
6.19e-2 |
SMART |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.6%
- 20x: 98.9%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a non-collagenous glycoprotein component of the tectorial membrane, which covers the auditory hair cells in the cochlea of the inner ear. A similar protein in mouse functions in low-frequency hearing. [provided by RefSeq, Jul 2013]
PHENOTYPE: Homozygotes for a null allele show an enlarged tectorial membrane with a disrupted striated-sheet matrix, absence of the marginal band, and low-frequency hearing loss. However, basilar-membrane and neural tuning are both enhanced in high-frequency cochlear regions, with little loss in sensitivity. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 49 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2700049A03Rik |
A |
G |
12: 71,236,356 (GRCm39) |
T1236A |
possibly damaging |
Het |
| 9930111J21Rik1 |
A |
T |
11: 48,838,829 (GRCm39) |
M586K |
probably damaging |
Het |
| Adamts4 |
T |
C |
1: 171,080,314 (GRCm39) |
V289A |
possibly damaging |
Het |
| Ankrd44 |
A |
T |
1: 54,762,257 (GRCm39) |
D522E |
probably benign |
Het |
| Asb14 |
A |
G |
14: 26,637,067 (GRCm39) |
Y603C |
probably damaging |
Het |
| Bcl7b |
A |
G |
5: 135,197,308 (GRCm39) |
|
probably benign |
Het |
| Cd5 |
T |
C |
19: 10,700,469 (GRCm39) |
K345R |
possibly damaging |
Het |
| Celsr3 |
T |
C |
9: 108,708,988 (GRCm39) |
F1278S |
probably damaging |
Het |
| Cndp1 |
T |
A |
18: 84,650,049 (GRCm39) |
T215S |
possibly damaging |
Het |
| Crygb |
T |
G |
1: 65,119,709 (GRCm39) |
R90S |
probably damaging |
Het |
| Dlg4 |
T |
A |
11: 69,933,078 (GRCm39) |
F555I |
possibly damaging |
Het |
| Dnah3 |
C |
T |
7: 119,551,728 (GRCm39) |
V2864M |
probably damaging |
Het |
| Dnttip2 |
A |
G |
3: 122,070,351 (GRCm39) |
E522G |
probably damaging |
Het |
| Ercc4 |
G |
C |
16: 12,948,001 (GRCm39) |
R406P |
probably benign |
Het |
| Foxp1 |
G |
A |
6: 98,922,543 (GRCm39) |
P430S |
unknown |
Het |
| Galnt1 |
A |
G |
18: 24,400,628 (GRCm39) |
T245A |
probably benign |
Het |
| Gnl2 |
T |
A |
4: 124,938,082 (GRCm39) |
N287K |
probably damaging |
Het |
| Jcad |
C |
A |
18: 4,649,402 (GRCm39) |
A91E |
possibly damaging |
Het |
| Kat6a |
G |
A |
8: 23,352,275 (GRCm39) |
V20I |
probably damaging |
Het |
| Kcnb2 |
A |
G |
1: 15,781,777 (GRCm39) |
N883S |
probably damaging |
Het |
| Lrch3 |
A |
T |
16: 32,775,750 (GRCm39) |
R205S |
probably damaging |
Het |
| Lrr1 |
A |
G |
12: 69,215,825 (GRCm39) |
T66A |
probably benign |
Het |
| Lrrc37a |
T |
A |
11: 103,351,635 (GRCm39) |
I2569F |
unknown |
Het |
| Maip1 |
A |
T |
1: 57,449,102 (GRCm39) |
Q161L |
probably damaging |
Het |
| Neb |
T |
C |
2: 52,047,923 (GRCm39) |
E6699G |
probably benign |
Het |
| Nup205 |
A |
G |
6: 35,202,182 (GRCm39) |
R1305G |
probably damaging |
Het |
| Or1e19 |
T |
A |
11: 73,316,794 (GRCm39) |
N5I |
probably damaging |
Het |
| Or5ac21 |
A |
T |
16: 59,124,418 (GRCm39) |
R301* |
probably null |
Het |
| Pate1 |
G |
A |
9: 35,596,418 (GRCm39) |
R116W |
probably damaging |
Het |
| Pcsk5 |
T |
G |
19: 17,410,809 (GRCm39) |
E1861A |
probably benign |
Het |
| Peg10 |
C |
CTCA |
6: 4,756,453 (GRCm39) |
|
probably benign |
Het |
| Per1 |
A |
T |
11: 68,999,953 (GRCm39) |
D1215V |
possibly damaging |
Het |
| Phactr2 |
A |
G |
10: 13,129,570 (GRCm39) |
S233P |
probably damaging |
Het |
| Pramel28 |
A |
G |
4: 143,692,212 (GRCm39) |
V263A |
probably benign |
Het |
| Rgsl1 |
T |
A |
1: 153,701,435 (GRCm39) |
N340Y |
possibly damaging |
Het |
| Rhot1 |
C |
T |
11: 80,114,786 (GRCm39) |
P65S |
probably damaging |
Het |
| Scrn2 |
T |
C |
11: 96,921,869 (GRCm39) |
L113P |
probably damaging |
Het |
| Sema6a |
T |
C |
18: 47,381,958 (GRCm39) |
K863R |
probably benign |
Het |
| Slc15a1 |
A |
G |
14: 121,715,528 (GRCm39) |
V337A |
possibly damaging |
Het |
| Slc25a1 |
T |
C |
16: 17,743,720 (GRCm39) |
D298G |
probably benign |
Het |
| Slc25a22 |
G |
A |
7: 141,011,737 (GRCm39) |
P168S |
probably benign |
Het |
| Slc29a4 |
A |
T |
5: 142,691,109 (GRCm39) |
|
probably null |
Het |
| Slc35d1 |
T |
C |
4: 103,047,007 (GRCm39) |
T264A |
|
Het |
| Spice1 |
T |
C |
16: 44,205,060 (GRCm39) |
S789P |
probably damaging |
Het |
| Sprr2b |
CTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCC |
CTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCC |
3: 92,224,826 (GRCm39) |
|
probably benign |
Het |
| Ttn |
T |
A |
2: 76,544,810 (GRCm39) |
Y32764F |
probably damaging |
Het |
| Utrn |
T |
G |
10: 12,545,887 (GRCm39) |
S1684R |
possibly damaging |
Het |
| Zic1 |
G |
T |
9: 91,246,847 (GRCm39) |
A75E |
probably damaging |
Het |
| Zswim4 |
A |
G |
8: 84,939,014 (GRCm39) |
V956A |
possibly damaging |
Het |
|
| Other mutations in Tectb |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01754:Tectb
|
APN |
19 |
55,172,445 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02001:Tectb
|
APN |
19 |
55,178,027 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
IGL02510:Tectb
|
APN |
19 |
55,179,943 (GRCm39) |
missense |
probably damaging |
1.00 |
|
BB010:Tectb
|
UTSW |
19 |
55,183,105 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
BB020:Tectb
|
UTSW |
19 |
55,183,105 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R0028:Tectb
|
UTSW |
19 |
55,183,109 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0130:Tectb
|
UTSW |
19 |
55,170,393 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0586:Tectb
|
UTSW |
19 |
55,170,356 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0598:Tectb
|
UTSW |
19 |
55,178,018 (GRCm39) |
nonsense |
probably null |
|
|
R0655:Tectb
|
UTSW |
19 |
55,178,302 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R0708:Tectb
|
UTSW |
19 |
55,179,984 (GRCm39) |
missense |
probably benign |
0.37 |
|
R1314:Tectb
|
UTSW |
19 |
55,172,417 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1999:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2000:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2024:Tectb
|
UTSW |
19 |
55,170,361 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2148:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2159:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2160:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2161:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2162:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2355:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2358:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2495:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2497:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2511:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2568:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2570:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2848:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2897:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R2898:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R3712:Tectb
|
UTSW |
19 |
55,169,431 (GRCm39) |
start gained |
probably benign |
|
|
R5671:Tectb
|
UTSW |
19 |
55,181,059 (GRCm39) |
missense |
probably benign |
0.42 |
|
R5875:Tectb
|
UTSW |
19 |
55,178,058 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R6312:Tectb
|
UTSW |
19 |
55,181,094 (GRCm39) |
frame shift |
probably null |
|
|
R6315:Tectb
|
UTSW |
19 |
55,179,904 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R6366:Tectb
|
UTSW |
19 |
55,170,350 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7729:Tectb
|
UTSW |
19 |
55,181,104 (GRCm39) |
missense |
|
|
|
R7933:Tectb
|
UTSW |
19 |
55,183,105 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R8557:Tectb
|
UTSW |
19 |
55,181,105 (GRCm39) |
unclassified |
probably benign |
|
|
R8835:Tectb
|
UTSW |
19 |
55,172,270 (GRCm39) |
missense |
probably benign |
0.43 |
|
R8918:Tectb
|
UTSW |
19 |
55,180,000 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8935:Tectb
|
UTSW |
19 |
55,183,132 (GRCm39) |
missense |
probably benign |
|
|
R9239:Tectb
|
UTSW |
19 |
55,181,094 (GRCm39) |
frame shift |
probably null |
|
|
R9345:Tectb
|
UTSW |
19 |
55,183,097 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9467:Tectb
|
UTSW |
19 |
55,181,093 (GRCm39) |
missense |
|
|
|
| Predicted Primers |
PCR Primer
(F):5'- TGCCAGCTCAATGTGTCTGC -3'
(R):5'- TACCCCTTATTGATGAGCTGCC -3'
Sequencing Primer
(F):5'- AATGTGTCTGCTTCCACCAG -3'
(R):5'- CCTTATTGATGAGCTGCCACTGTAAG -3'
|
| Posted On |
2020-10-20 |
Incidental Mutation