Mutagenetix > Incidental Mutation

Incidental Mutation 'R8412:Tube1'

652754

Institutional Source

Beutler Lab

Gene Symbol

Tube1

Ensembl Gene

ENSMUSG00000019845

Gene Name

tubulin, epsilon 1

Synonyms

2310061K05Rik

MMRRC Submission

067816-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.932) question?

Stock #

R8412 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

39009972-39028538 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 39021657 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 301 (S301T)

Ref Sequence

ENSEMBL: ENSMUSP00000019991 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000019991] [ENSMUST00000213459]

AlphaFold

Q9D6T1

Predicted Effect

possibly damaging
Transcript: ENSMUST00000019991
AA Change: S301T

PolyPhen 2 Score 0.947 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000019991
Gene: ENSMUSG00000019845
AA Change: S301T

Domain	Start	End	E-Value	Type
Tubulin	55	277	1.08e-38	SMART
Tubulin_C	279	414	9.81e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000213459

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the tubulin superfamily. This protein localizes to the centriolar sub-distal appendages that are associated with the older of the two centrioles after centrosome duplication. This protein plays a central role in organization of the microtubules during centriole duplication. A pseudogene of this gene is found on chromosome 5.[provided by RefSeq, Jan 2009]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700056E22Rik	T	A	1: 183,765,356 (GRCm39)	R234S	probably damaging	Het
Ace	T	A	11: 105,870,092 (GRCm39)	F806Y	probably benign	Het
Ak8	A	G	2: 28,629,643 (GRCm39)	T286A	probably benign	Het
Apba2	T	A	7: 64,395,546 (GRCm39)	F674Y	probably damaging	Het
Apob	A	G	12: 8,058,069 (GRCm39)	I2184V	probably benign	Het
Arhgap23	C	T	11: 97,356,854 (GRCm39)	P884L	probably benign	Het
Atg2a	T	C	19: 6,294,554 (GRCm39)	L90P	probably damaging	Het
Bhmt2	T	A	13: 93,798,820 (GRCm39)	I334F	possibly damaging	Het
Bmi1	C	T	2: 18,689,114 (GRCm39)	T266I	probably damaging	Het
Cdh26	A	G	2: 178,104,517 (GRCm39)	I301V	probably damaging	Het
Cenpx	A	T	11: 120,602,558 (GRCm39)	H68Q	unknown	Het
Cnot10	T	C	9: 114,439,738 (GRCm39)	R524G	probably benign	Het
Cnpy1	A	T	5: 28,414,206 (GRCm39)	Y22*	probably null	Het
Csmd3	C	T	15: 47,499,794 (GRCm39)	R2114H		Het
Defa29	T	A	8: 21,816,062 (GRCm39)	T102S	probably benign	Het
Fras1	T	C	5: 96,744,711 (GRCm39)	I582T	probably benign	Het
Gm14295	G	A	2: 176,501,422 (GRCm39)	C304Y	probably damaging	Het
Gucy2d	T	C	7: 98,093,046 (GRCm39)	V141A	possibly damaging	Het
Ifi47	A	C	11: 48,986,425 (GRCm39)	Q64P	probably damaging	Het
Irx3	G	T	8: 92,527,028 (GRCm39)	S225R	possibly damaging	Het
Itpr1	A	G	6: 108,340,581 (GRCm39)	H289R	probably benign	Het
Lamc3	A	G	2: 31,802,128 (GRCm39)	D512G	probably damaging	Het
Mcm3	C	T	1: 20,886,980 (GRCm39)	V142I	probably benign	Het
Med23	C	A	10: 24,784,632 (GRCm39)	F1200L	probably benign	Het
Ndst4	A	T	3: 125,364,439 (GRCm39)	D372V	possibly damaging	Het
Nob1	T	A	8: 108,148,230 (GRCm39)	K71*	probably null	Het
Ntrk3	A	G	7: 78,005,897 (GRCm39)	I488T	probably benign	Het
Pds5b	G	T	5: 150,643,424 (GRCm39)	C82F	probably damaging	Het
Pkd1l3	T	A	8: 110,360,022 (GRCm39)	V969E	possibly damaging	Het
Ppme1	A	T	7: 99,984,298 (GRCm39)	N307K	probably benign	Het
Pus7l	C	T	15: 94,425,856 (GRCm39)	C515Y	probably benign	Het
Rpp21	T	A	17: 36,568,591 (GRCm39)	H22L	possibly damaging	Het
Scamp3	T	C	3: 89,088,525 (GRCm39)	F244L	probably damaging	Het
Scgb1b7	A	T	7: 31,412,379 (GRCm39)	K52*	probably null	Het
Slc12a3	T	C	8: 95,060,695 (GRCm39)	I261T	probably damaging	Het
Slc19a3	C	T	1: 82,992,533 (GRCm39)	R396H	probably damaging	Het
Slc22a14	T	C	9: 119,009,922 (GRCm39)	I58V	probably benign	Het
Slc9a9	A	C	9: 95,111,092 (GRCm39)	T637P	probably damaging	Het
Snrnp40	T	A	4: 130,278,316 (GRCm39)	C274S	possibly damaging	Het
Sptbn1	A	G	11: 30,088,457 (GRCm39)	V905A	probably damaging	Het
Taok3	A	G	5: 117,404,102 (GRCm39)	D759G	possibly damaging	Het
Tas1r1	T	C	4: 152,117,033 (GRCm39)	I200M	probably benign	Het
Tnfrsf25	T	C	4: 152,204,139 (GRCm39)	V360A	possibly damaging	Het
Trim12a	A	T	7: 103,953,544 (GRCm39)	M189K	possibly damaging	Het
Tspan32	T	C	7: 142,559,695 (GRCm39)	F41L	probably benign	Het
Usp8	T	C	2: 126,584,578 (GRCm39)	S596P	probably benign	Het
Virma	T	A	4: 11,521,261 (GRCm39)		probably null	Het
Vmn2r58	T	C	7: 41,513,722 (GRCm39)	D307G	probably benign	Het
Zeb2	T	C	2: 44,888,964 (GRCm39)	K327R	probably damaging	Het
Zfp54	C	T	17: 21,654,910 (GRCm39)	T468M	probably benign	Het
Zfp780b	A	T	7: 27,662,551 (GRCm39)	I668N	possibly damaging	Het

Other mutations in Tube1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01457:Tube1	APN	10	39,021,718 (GRCm39)	splice site	probably benign
IGL01977:Tube1	APN	10	39,011,041 (GRCm39)	splice site	probably benign
IGL02437:Tube1	APN	10	39,016,846 (GRCm39)	missense	probably damaging	1.00
IGL03251:Tube1	APN	10	39,010,977 (GRCm39)	splice site	probably benign
R0145:Tube1	UTSW	10	39,021,598 (GRCm39)	missense	possibly damaging	0.89
R0544:Tube1	UTSW	10	39,016,941 (GRCm39)	splice site	probably null
R0834:Tube1	UTSW	10	39,010,168 (GRCm39)	splice site	probably null
R1251:Tube1	UTSW	10	39,010,204 (GRCm39)	nonsense	probably null
R1557:Tube1	UTSW	10	39,021,711 (GRCm39)	critical splice donor site	probably null
R1607:Tube1	UTSW	10	39,020,762 (GRCm39)	missense	possibly damaging	0.89
R2138:Tube1	UTSW	10	39,023,347 (GRCm39)	missense	probably benign	0.04
R2367:Tube1	UTSW	10	39,020,915 (GRCm39)	missense	probably damaging	1.00
R4209:Tube1	UTSW	10	39,020,930 (GRCm39)	splice site	probably null
R4646:Tube1	UTSW	10	39,018,363 (GRCm39)	missense	possibly damaging	0.63
R4840:Tube1	UTSW	10	39,020,842 (GRCm39)	missense	probably benign	0.06
R5267:Tube1	UTSW	10	39,020,552 (GRCm39)	missense	probably benign	0.00
R6331:Tube1	UTSW	10	39,010,097 (GRCm39)	missense	probably benign	0.01
R7602:Tube1	UTSW	10	39,018,262 (GRCm39)	missense	probably benign	0.33
R7778:Tube1	UTSW	10	39,018,294 (GRCm39)	missense	probably benign	0.25
R7824:Tube1	UTSW	10	39,018,294 (GRCm39)	missense	probably benign	0.25
R8218:Tube1	UTSW	10	39,023,375 (GRCm39)	missense	possibly damaging	0.78
R9039:Tube1	UTSW	10	39,011,017 (GRCm39)	missense	probably damaging	1.00
X0023:Tube1	UTSW	10	39,020,758 (GRCm39)	missense	probably benign	0.00
Z1177:Tube1	UTSW	10	39,025,453 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- TGATTCAGAAACAAGAGCTCCG -3'
(R):5'- CTTGACTAATGAGAAATGCCTGTCAC -3'

Sequencing Primer
(F):5'- GATTCAGAAACAAGAGCTCCGTTCTG -3'
(R):5'- CAGGCAATGGAATCCACT -3'

Posted On

2020-10-20