Mutagenetix > Incidental Mutation

Incidental Mutation 'R8412:Atg2a'

652766

Institutional Source

Beutler Lab

Gene Symbol

Atg2a

Ensembl Gene

ENSMUSG00000024773

Gene Name

autophagy related 2A

Synonyms

1810013C15Rik

MMRRC Submission

067816-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.400) question?

Stock #

R8412 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

6291698-6312365 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 6294554 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 90 (L90P)

Ref Sequence

ENSEMBL: ENSMUSP00000046412 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045351]

AlphaFold

Q6P4T0

Predicted Effect

probably damaging
Transcript: ENSMUST00000045351
AA Change: L90P

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000046412
Gene: ENSMUSG00000024773
AA Change: L90P

Domain	Start	End	E-Value	Type
Pfam:Chorein_N	14	131	7.6e-20	PFAM
low complexity region	138	154	N/A	INTRINSIC
low complexity region	285	301	N/A	INTRINSIC
low complexity region	501	512	N/A	INTRINSIC
low complexity region	852	863	N/A	INTRINSIC
low complexity region	1069	1081	N/A	INTRINSIC
low complexity region	1429	1446	N/A	INTRINSIC
low complexity region	1761	1773	N/A	INTRINSIC
Pfam:ATG_C	1814	1908	2.2e-31	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000145600

SMART Domains

Protein: ENSMUSP00000114998
Gene: ENSMUSG00000024773

Domain	Start	End	E-Value	Type
low complexity region	87	103	N/A	INTRINSIC
low complexity region	303	314	N/A	INTRINSIC
low complexity region	654	665	N/A	INTRINSIC
low complexity region	871	883	N/A	INTRINSIC
low complexity region	1233	1250	N/A	INTRINSIC
low complexity region	1565	1577	N/A	INTRINSIC
Pfam:ATG_C	1618	1712	3.6e-32	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700056E22Rik	T	A	1: 183,765,356 (GRCm39)	R234S	probably damaging	Het
Ace	T	A	11: 105,870,092 (GRCm39)	F806Y	probably benign	Het
Ak8	A	G	2: 28,629,643 (GRCm39)	T286A	probably benign	Het
Apba2	T	A	7: 64,395,546 (GRCm39)	F674Y	probably damaging	Het
Apob	A	G	12: 8,058,069 (GRCm39)	I2184V	probably benign	Het
Arhgap23	C	T	11: 97,356,854 (GRCm39)	P884L	probably benign	Het
Bhmt2	T	A	13: 93,798,820 (GRCm39)	I334F	possibly damaging	Het
Bmi1	C	T	2: 18,689,114 (GRCm39)	T266I	probably damaging	Het
Cdh26	A	G	2: 178,104,517 (GRCm39)	I301V	probably damaging	Het
Cenpx	A	T	11: 120,602,558 (GRCm39)	H68Q	unknown	Het
Cnot10	T	C	9: 114,439,738 (GRCm39)	R524G	probably benign	Het
Cnpy1	A	T	5: 28,414,206 (GRCm39)	Y22*	probably null	Het
Csmd3	C	T	15: 47,499,794 (GRCm39)	R2114H		Het
Defa29	T	A	8: 21,816,062 (GRCm39)	T102S	probably benign	Het
Fras1	T	C	5: 96,744,711 (GRCm39)	I582T	probably benign	Het
Gm14295	G	A	2: 176,501,422 (GRCm39)	C304Y	probably damaging	Het
Gucy2d	T	C	7: 98,093,046 (GRCm39)	V141A	possibly damaging	Het
Ifi47	A	C	11: 48,986,425 (GRCm39)	Q64P	probably damaging	Het
Irx3	G	T	8: 92,527,028 (GRCm39)	S225R	possibly damaging	Het
Itpr1	A	G	6: 108,340,581 (GRCm39)	H289R	probably benign	Het
Lamc3	A	G	2: 31,802,128 (GRCm39)	D512G	probably damaging	Het
Mcm3	C	T	1: 20,886,980 (GRCm39)	V142I	probably benign	Het
Med23	C	A	10: 24,784,632 (GRCm39)	F1200L	probably benign	Het
Ndst4	A	T	3: 125,364,439 (GRCm39)	D372V	possibly damaging	Het
Nob1	T	A	8: 108,148,230 (GRCm39)	K71*	probably null	Het
Ntrk3	A	G	7: 78,005,897 (GRCm39)	I488T	probably benign	Het
Pds5b	G	T	5: 150,643,424 (GRCm39)	C82F	probably damaging	Het
Pkd1l3	T	A	8: 110,360,022 (GRCm39)	V969E	possibly damaging	Het
Ppme1	A	T	7: 99,984,298 (GRCm39)	N307K	probably benign	Het
Pus7l	C	T	15: 94,425,856 (GRCm39)	C515Y	probably benign	Het
Rpp21	T	A	17: 36,568,591 (GRCm39)	H22L	possibly damaging	Het
Scamp3	T	C	3: 89,088,525 (GRCm39)	F244L	probably damaging	Het
Scgb1b7	A	T	7: 31,412,379 (GRCm39)	K52*	probably null	Het
Slc12a3	T	C	8: 95,060,695 (GRCm39)	I261T	probably damaging	Het
Slc19a3	C	T	1: 82,992,533 (GRCm39)	R396H	probably damaging	Het
Slc22a14	T	C	9: 119,009,922 (GRCm39)	I58V	probably benign	Het
Slc9a9	A	C	9: 95,111,092 (GRCm39)	T637P	probably damaging	Het
Snrnp40	T	A	4: 130,278,316 (GRCm39)	C274S	possibly damaging	Het
Sptbn1	A	G	11: 30,088,457 (GRCm39)	V905A	probably damaging	Het
Taok3	A	G	5: 117,404,102 (GRCm39)	D759G	possibly damaging	Het
Tas1r1	T	C	4: 152,117,033 (GRCm39)	I200M	probably benign	Het
Tnfrsf25	T	C	4: 152,204,139 (GRCm39)	V360A	possibly damaging	Het
Trim12a	A	T	7: 103,953,544 (GRCm39)	M189K	possibly damaging	Het
Tspan32	T	C	7: 142,559,695 (GRCm39)	F41L	probably benign	Het
Tube1	T	A	10: 39,021,657 (GRCm39)	S301T	possibly damaging	Het
Usp8	T	C	2: 126,584,578 (GRCm39)	S596P	probably benign	Het
Virma	T	A	4: 11,521,261 (GRCm39)		probably null	Het
Vmn2r58	T	C	7: 41,513,722 (GRCm39)	D307G	probably benign	Het
Zeb2	T	C	2: 44,888,964 (GRCm39)	K327R	probably damaging	Het
Zfp54	C	T	17: 21,654,910 (GRCm39)	T468M	probably benign	Het
Zfp780b	A	T	7: 27,662,551 (GRCm39)	I668N	possibly damaging	Het

Other mutations in Atg2a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00972:Atg2a	APN	19	6,304,629 (GRCm39)	missense	probably damaging	1.00
IGL01612:Atg2a	APN	19	6,302,514 (GRCm39)	missense	probably benign	0.03
IGL02105:Atg2a	APN	19	6,300,433 (GRCm39)	splice site	probably benign
IGL02151:Atg2a	APN	19	6,305,787 (GRCm39)	missense	possibly damaging	0.95
IGL02228:Atg2a	APN	19	6,296,830 (GRCm39)	missense	probably benign	0.29
IGL02329:Atg2a	APN	19	6,299,959 (GRCm39)	critical splice donor site	probably null
IGL02408:Atg2a	APN	19	6,291,858 (GRCm39)	nonsense	probably null
IGL02538:Atg2a	APN	19	6,307,658 (GRCm39)	missense	probably benign
IGL02830:Atg2a	APN	19	6,297,711 (GRCm39)	missense	probably benign	0.04
IGL03349:Atg2a	APN	19	6,308,054 (GRCm39)	missense	possibly damaging	0.77
PIT4515001:Atg2a	UTSW	19	6,303,615 (GRCm39)	missense	probably damaging	1.00
R0099:Atg2a	UTSW	19	6,302,819 (GRCm39)	missense	probably damaging	0.97
R0212:Atg2a	UTSW	19	6,296,584 (GRCm39)	missense	probably damaging	1.00
R0365:Atg2a	UTSW	19	6,297,713 (GRCm39)	missense	possibly damaging	0.51
R0398:Atg2a	UTSW	19	6,296,608 (GRCm39)	missense	probably damaging	1.00
R0483:Atg2a	UTSW	19	6,306,632 (GRCm39)	missense	probably benign	0.01
R0483:Atg2a	UTSW	19	6,306,631 (GRCm39)	missense	probably damaging	0.98
R0494:Atg2a	UTSW	19	6,303,407 (GRCm39)	missense	probably damaging	1.00
R0511:Atg2a	UTSW	19	6,302,569 (GRCm39)	missense	possibly damaging	0.89
R0590:Atg2a	UTSW	19	6,295,037 (GRCm39)	unclassified	probably benign
R0592:Atg2a	UTSW	19	6,295,037 (GRCm39)	unclassified	probably benign
R0593:Atg2a	UTSW	19	6,295,037 (GRCm39)	unclassified	probably benign
R0630:Atg2a	UTSW	19	6,294,547 (GRCm39)	missense	probably damaging	0.99
R1306:Atg2a	UTSW	19	6,303,051 (GRCm39)	missense	probably benign	0.31
R1437:Atg2a	UTSW	19	6,300,646 (GRCm39)	missense	probably damaging	1.00
R1539:Atg2a	UTSW	19	6,296,801 (GRCm39)	splice site	probably null
R1774:Atg2a	UTSW	19	6,300,628 (GRCm39)	missense	probably benign	0.01
R1781:Atg2a	UTSW	19	6,306,243 (GRCm39)	missense	probably damaging	0.96
R1854:Atg2a	UTSW	19	6,302,461 (GRCm39)	missense	probably benign	0.11
R1884:Atg2a	UTSW	19	6,304,414 (GRCm39)	missense	probably damaging	1.00
R1899:Atg2a	UTSW	19	6,295,097 (GRCm39)	missense	probably damaging	1.00
R1935:Atg2a	UTSW	19	6,302,566 (GRCm39)	missense	probably damaging	1.00
R2020:Atg2a	UTSW	19	6,300,299 (GRCm39)	critical splice donor site	probably null
R2071:Atg2a	UTSW	19	6,307,488 (GRCm39)	missense	probably benign	0.00
R2513:Atg2a	UTSW	19	6,308,076 (GRCm39)	critical splice donor site	probably null
R3808:Atg2a	UTSW	19	6,302,846 (GRCm39)	missense	possibly damaging	0.71
R4065:Atg2a	UTSW	19	6,308,396 (GRCm39)	missense	probably damaging	1.00
R4109:Atg2a	UTSW	19	6,308,404 (GRCm39)	missense	possibly damaging	0.95
R4352:Atg2a	UTSW	19	6,307,487 (GRCm39)	missense	probably benign	0.04
R4440:Atg2a	UTSW	19	6,305,859 (GRCm39)	critical splice donor site	probably null
R4472:Atg2a	UTSW	19	6,308,985 (GRCm39)	missense	probably damaging	0.98
R4669:Atg2a	UTSW	19	6,309,017 (GRCm39)	critical splice donor site	probably null
R4878:Atg2a	UTSW	19	6,300,274 (GRCm39)	missense	probably damaging	1.00
R4926:Atg2a	UTSW	19	6,307,563 (GRCm39)	missense	probably damaging	0.96
R5237:Atg2a	UTSW	19	6,296,844 (GRCm39)	missense	probably benign
R5350:Atg2a	UTSW	19	6,301,368 (GRCm39)	missense	probably damaging	0.99
R5507:Atg2a	UTSW	19	6,295,100 (GRCm39)	missense	possibly damaging	0.94
R5732:Atg2a	UTSW	19	6,307,490 (GRCm39)	missense	probably damaging	1.00
R5784:Atg2a	UTSW	19	6,311,535 (GRCm39)	missense	probably damaging	1.00
R5960:Atg2a	UTSW	19	6,304,390 (GRCm39)	missense	probably damaging	1.00
R5985:Atg2a	UTSW	19	6,304,667 (GRCm39)	missense	probably damaging	1.00
R6175:Atg2a	UTSW	19	6,291,759 (GRCm39)	unclassified	probably benign
R6572:Atg2a	UTSW	19	6,304,695 (GRCm39)	missense	probably damaging	0.98
R6878:Atg2a	UTSW	19	6,300,208 (GRCm39)	missense	probably damaging	0.99
R6879:Atg2a	UTSW	19	6,301,882 (GRCm39)	missense	possibly damaging	0.70
R6983:Atg2a	UTSW	19	6,310,070 (GRCm39)	missense	probably damaging	0.99
R7024:Atg2a	UTSW	19	6,300,249 (GRCm39)	missense	possibly damaging	0.88
R7217:Atg2a	UTSW	19	6,303,471 (GRCm39)	critical splice donor site	probably null
R7384:Atg2a	UTSW	19	6,311,707 (GRCm39)	missense	probably damaging	1.00
R7387:Atg2a	UTSW	19	6,305,198 (GRCm39)	missense	possibly damaging	0.79
R7425:Atg2a	UTSW	19	6,305,682 (GRCm39)	missense	probably benign	0.02
R7512:Atg2a	UTSW	19	6,310,106 (GRCm39)	missense	probably damaging	1.00
R7658:Atg2a	UTSW	19	6,301,293 (GRCm39)	missense	probably damaging	1.00
R7893:Atg2a	UTSW	19	6,301,326 (GRCm39)	missense	probably damaging	1.00
R8062:Atg2a	UTSW	19	6,302,609 (GRCm39)	critical splice donor site	probably null
R8258:Atg2a	UTSW	19	6,299,859 (GRCm39)	missense	probably damaging	0.98
R8259:Atg2a	UTSW	19	6,299,859 (GRCm39)	missense	probably damaging	0.98
R8350:Atg2a	UTSW	19	6,296,841 (GRCm39)	missense	probably benign	0.03
R8450:Atg2a	UTSW	19	6,296,841 (GRCm39)	missense	probably benign	0.03
R8474:Atg2a	UTSW	19	6,301,433 (GRCm39)	critical splice donor site	probably null
R8501:Atg2a	UTSW	19	6,304,420 (GRCm39)	missense	probably damaging	1.00
R8738:Atg2a	UTSW	19	6,306,674 (GRCm39)	missense	probably benign	0.00
R8786:Atg2a	UTSW	19	6,294,460 (GRCm39)	missense	probably damaging	1.00
R8810:Atg2a	UTSW	19	6,300,651 (GRCm39)	missense	probably benign	0.01
R8898:Atg2a	UTSW	19	6,306,721 (GRCm39)	splice site	probably benign
R9016:Atg2a	UTSW	19	6,300,111 (GRCm39)	missense	probably damaging	1.00
R9111:Atg2a	UTSW	19	6,311,534 (GRCm39)	missense	probably damaging	1.00
R9177:Atg2a	UTSW	19	6,291,905 (GRCm39)	missense	probably damaging	1.00
R9184:Atg2a	UTSW	19	6,291,887 (GRCm39)	missense	probably damaging	1.00
R9268:Atg2a	UTSW	19	6,291,905 (GRCm39)	missense	probably damaging	1.00
R9496:Atg2a	UTSW	19	6,310,022 (GRCm39)	missense	possibly damaging	0.63
R9570:Atg2a	UTSW	19	6,305,749 (GRCm39)	missense	probably benign	0.03
R9642:Atg2a	UTSW	19	6,300,198 (GRCm39)	nonsense	probably null
X0065:Atg2a	UTSW	19	6,308,226 (GRCm39)	missense	possibly damaging	0.89

Predicted Primers

PCR Primer
(F):5'- AGACAGTGGCTGTGTGAGAC -3'
(R):5'- CTGCAAGCTTGTGGTCATG -3'

Sequencing Primer
(F):5'- TGAGACTGTGGCAGGTAGC -3'
(R):5'- ATGAGGCCCAACTCTGAGAGTC -3'

Posted On

2020-10-20