Mutagenetix > Incidental Mutations

Incidental Mutation 'R8417:Fcna'

652980

Institutional Source

Beutler Lab

Gene Symbol

Fcna

Ensembl Gene

ENSMUSG00000026938

Gene Name

ficolin A

Synonyms

Fcn1, ficolin A

MMRRC Submission

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8417 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

25624666-25628030 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 25624851 bp

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 332 (R332L)

Ref Sequence

ENSEMBL: ENSMUSP00000028307 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028307] [ENSMUST00000142087]

Predicted Effect

probably damaging
Transcript: ENSMUST00000028307
AA Change: R332L

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000028307
Gene: ENSMUSG00000026938
AA Change: R332L

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:Collagen	48	108	2e-10	PFAM
FBG	121	334	2.18e-110	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000028308

SMART Domains

Protein: ENSMUSP00000028308
Gene: ENSMUSG00000026939

Domain	Start	End	E-Value	Type
Pfam:TMEM141	6	94	1.5e-41	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142087

SMART Domains

Protein: ENSMUSP00000121862
Gene: ENSMUSG00000026939

Domain	Start	End	E-Value	Type
Pfam:TMEM141	2	97	1e-43	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal collagen antibody-induced arthritis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 39 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
AB124611	T	C	9: 21,529,085		probably null	Het
Adamtsl1	G	A	4: 86,156,689	D98N	possibly damaging	Het
Adgrb3	T	C	1: 25,488,053	T601A	probably benign	Het
Ankrd33	C	A	15: 101,119,449	Q248K	probably benign	Het
Bsn	G	A	9: 108,111,452	A2367V	probably benign	Het
Casp12	G	T	9: 5,352,263	C155F	probably benign	Het
Clpp	T	C	17: 56,990,661	V81A	probably benign	Het
Cyp3a59	A	T	5: 146,090,685	I89F	possibly damaging	Het
Fam227b	C	A	2: 126,121,062	W178L	probably damaging	Het
Gdf3	T	G	6: 122,606,607	H267P	probably damaging	Het
Gm4450	G	A	3: 98,456,415	T38I	probably benign	Het
Gm5592	A	G	7: 41,288,551	D419G	probably benign	Het
Gm6882	A	G	7: 21,427,295	V216A	probably damaging	Het
Gsdma3	A	G	11: 98,629,777	N78S	probably benign	Het
Hydin	T	C	8: 110,569,392	I3579T	probably benign	Het
Ighmbp2	T	C	19: 3,261,590	I942V	probably damaging	Het
Lamc1	A	G	1: 153,230,769	Y1266H	probably damaging	Het
Lgi3	T	C	14: 70,534,806	Y264H	probably benign	Het
Lmod2	G	A	6: 24,603,385	E120K	possibly damaging	Het
Mbl2	G	T	19: 30,239,484	C232F	probably damaging	Het
Morc1	T	C	16: 48,460,740	V214A	probably damaging	Het
Nlrp4b	T	A	7: 10,725,953	C827*	probably null	Het
Olfr1086	A	G	2: 86,676,805	F176S	probably damaging	Het
Olfr358	T	A	2: 37,004,646	T323S	probably benign	Het
Pbrm1	T	A	14: 31,027,462	H72Q	possibly damaging	Het
Plekhm2	T	C	4: 141,627,825	I944V	probably benign	Het
Prdm8	A	T	5: 98,184,531	D97V	probably damaging	Het
Preb	G	A	5: 30,960,117		probably benign	Het
Prkcd	T	C	14: 30,609,251	K56E	probably benign	Het
Slit3	A	T	11: 35,610,611	I391F	probably damaging	Het
Spata19	A	G	9: 27,397,970	S91G	probably benign	Het
Stag3	A	G	5: 138,308,588	T1134A	probably benign	Het
Tgfbr2	A	T	9: 116,110,129	M235K	probably benign	Het
Tmtc2	A	T	10: 105,413,236	I212N	probably damaging	Het
Tnfrsf26	C	T	7: 143,614,902	R133K	probably benign	Het
Trim43c	C	A	9: 88,843,138	Q238K	probably benign	Het
Vcan	T	C	13: 89,688,743	D2894G	probably benign	Het
Wisp3	T	A	10: 39,151,211	R342*	probably null	Het
Zeb2	C	T	2: 45,022,996	S105N	probably damaging	Het

Other mutations in Fcna

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01945:Fcna	APN	2	25627835	start codon destroyed	probably null	0.53
IGL02479:Fcna	APN	2	25625260	missense	probably benign	0.02
IGL02488:Fcna	APN	2	25625211	critical splice donor site	probably null
IGL02984:Fcna	UTSW	2	25630681	unclassified	probably benign
IGL02988:Fcna	UTSW	2	25630681	unclassified	probably benign
IGL02991:Fcna	UTSW	2	25630681	unclassified	probably benign
IGL03014:Fcna	UTSW	2	25630681	unclassified	probably benign
IGL03046:Fcna	UTSW	2	25630681	unclassified	probably benign
IGL03048:Fcna	UTSW	2	25630681	unclassified	probably benign
IGL03052:Fcna	UTSW	2	25630681	unclassified	probably benign
IGL03055:Fcna	UTSW	2	25630681	unclassified	probably benign
IGL03138:Fcna	UTSW	2	25630681	unclassified	probably benign
R0318:Fcna	UTSW	2	25625059	missense	probably benign
R0455:Fcna	UTSW	2	25625508	missense	probably damaging	1.00
R2212:Fcna	UTSW	2	25627493	missense	probably damaging	1.00
R3413:Fcna	UTSW	2	25627493	missense	probably damaging	1.00
R3414:Fcna	UTSW	2	25627493	missense	probably damaging	1.00
R3854:Fcna	UTSW	2	25627772	missense	possibly damaging	0.76
R4007:Fcna	UTSW	2	25626006	splice site	probably null
R4448:Fcna	UTSW	2	25625476	missense	probably damaging	1.00
R4782:Fcna	UTSW	2	25625326	missense	probably damaging	1.00
R4831:Fcna	UTSW	2	25625341	missense	probably benign	0.11
R7255:Fcna	UTSW	2	25626028	missense	probably damaging	0.99
R7920:Fcna	UTSW	2	25626286	missense	probably benign	0.04
R8386:Fcna	UTSW	2	25626015	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TCTCACAGTGATCAGGCCTC -3'
(R):5'- CCCATGACCAAGATAATGATGC -3'

Sequencing Primer
(F):5'- ACAGTGATCAGGCCTCTGCTTC -3'
(R):5'- CAAATAGCATGAACTGTGCAGCTTTG -3'

Posted On

2020-10-20