Mutagenetix > Incidental Mutation

Incidental Mutation 'R8419:Spopfm2'

653075

Institutional Source

Beutler Lab

Gene Symbol

Spopfm2

Ensembl Gene

ENSMUSG00000074424

Gene Name

speckle-type BTB/POZ protein family member 2

Synonyms

Gm10696

MMRRC Submission

067772-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.939) question?

Stock #

R8419 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

94081719-94085500 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 94082921 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 297 (I297V)

Ref Sequence

ENSEMBL: ENSMUSP00000124942 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000161475] [ENSMUST00000167916]

AlphaFold

Q3UTC4

Predicted Effect

probably benign
Transcript: ENSMUST00000161475
AA Change: I297V

PolyPhen 2 Score 0.056 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000124942
Gene: ENSMUSG00000074424
AA Change: I297V

Domain	Start	End	E-Value	Type
MATH	24	130	4.7e-10	SMART
BTB	188	287	1.53e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000167916
AA Change: I297V

PolyPhen 2 Score 0.056 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000132199
Gene: ENSMUSG00000074424
AA Change: I297V

Domain	Start	End	E-Value	Type
MATH	24	130	4.7e-10	SMART
BTB	188	287	1.53e-25	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9930111J21Rik2	A	T	11: 48,910,312 (GRCm39)	I707N	probably damaging	Het
Abca14	A	G	7: 119,815,489 (GRCm39)	I246V	probably benign	Het
Adam19	G	A	11: 46,015,850 (GRCm39)	A337T	possibly damaging	Het
Ankrd40	G	T	11: 94,225,662 (GRCm39)	G231V	probably damaging	Het
Arhgap5	G	A	12: 52,565,572 (GRCm39)	V848I	probably damaging	Het
Bmpr2	G	A	1: 59,906,515 (GRCm39)	R536H	probably damaging	Het
Casz1	T	A	4: 149,033,040 (GRCm39)	S1310T	probably benign	Het
Chi3l1	A	T	1: 134,117,280 (GRCm39)	D367V	probably damaging	Het
Cltc	A	G	11: 86,598,392 (GRCm39)	V990A	probably benign	Het
Col6a3	A	T	1: 90,729,935 (GRCm39)	S1790R	probably damaging	Het
Comt	C	T	16: 18,230,637 (GRCm39)	W24*	probably null	Het
Cyp2c70	T	C	19: 40,149,024 (GRCm39)	E374G	possibly damaging	Het
Dach1	T	C	14: 98,406,076 (GRCm39)	T224A	probably damaging	Het
Dapk1	G	A	13: 60,887,911 (GRCm39)	E656K	probably benign	Het
Dicer1	A	G	12: 104,668,936 (GRCm39)	S1249P	probably benign	Het
Dpp8	A	C	9: 64,988,037 (GRCm39)	I861L	probably benign	Het
Enam	C	T	5: 88,651,209 (GRCm39)	S906L	possibly damaging	Het
Eral1	A	T	11: 77,964,906 (GRCm39)	I429N	possibly damaging	Het
Fbxo10	C	A	4: 45,041,809 (GRCm39)	G807C	possibly damaging	Het
Fcgbpl1	G	T	7: 27,843,346 (GRCm39)	G745C	probably damaging	Het
Fsip2	G	C	2: 82,808,963 (GRCm39)	E1761Q	probably damaging	Het
Ggnbp2	C	T	11: 84,728,815 (GRCm39)		probably null	Het
Gm4353	G	A	7: 115,682,784 (GRCm39)	P266S	probably benign	Het
Gpr84	T	C	15: 103,217,963 (GRCm39)	N38S	probably damaging	Het
Guca1a	A	T	17: 47,706,480 (GRCm39)	I115N	probably damaging	Het
Hic1	C	T	11: 75,057,096 (GRCm39)	V598M	possibly damaging	Het
Itga1	A	T	13: 115,143,604 (GRCm39)	I309N	probably damaging	Het
Itga11	T	C	9: 62,662,460 (GRCm39)	S478P	possibly damaging	Het
Kctd8	T	C	5: 69,497,713 (GRCm39)	D311G	probably damaging	Het
Klhl32	T	C	4: 24,682,203 (GRCm39)	E127G	possibly damaging	Het
Lama2	T	A	10: 27,298,559 (GRCm39)	Y179F	probably benign	Het
Lamb2	G	T	9: 108,365,563 (GRCm39)	R1382L	probably benign	Het
Mrpl1	C	G	5: 96,374,226 (GRCm39)	A167G	probably benign	Het
Muc17	A	T	5: 137,175,570 (GRCm39)	N33K		Het
Myt1	A	T	2: 181,424,399 (GRCm39)	R31*	probably null	Het
Nectin2	T	C	7: 19,451,646 (GRCm39)	T463A	probably benign	Het
Nectin2	A	T	7: 19,472,003 (GRCm39)	Y129N	probably damaging	Het
Or12d13	A	G	17: 37,647,466 (GRCm39)	I219T	possibly damaging	Het
Or4k47	A	T	2: 111,451,849 (GRCm39)	M190K	probably benign	Het
Papolb	T	A	5: 142,514,296 (GRCm39)	N449I	possibly damaging	Het
Parn	T	C	16: 13,466,338 (GRCm39)	K236R	probably benign	Het
Pramel22	A	G	4: 143,382,997 (GRCm39)	I74T	probably damaging	Het
Prelid1	G	A	13: 55,470,698 (GRCm39)	R42Q	probably damaging	Het
Prelp	A	G	1: 133,843,020 (GRCm39)	F42L	probably benign	Het
Pygo1	C	T	9: 72,852,380 (GRCm39)	P189L	probably damaging	Het
Rimbp3	T	A	16: 17,030,886 (GRCm39)	S1437T	probably damaging	Het
Slc37a2	T	A	9: 37,148,726 (GRCm39)	D252V	probably benign	Het
Socs7	A	G	11: 97,254,165 (GRCm39)	K233R	probably benign	Het
Stat4	A	G	1: 52,137,637 (GRCm39)	D476G	possibly damaging	Het
Tesmin	A	G	19: 3,439,077 (GRCm39)	D43G	probably benign	Het
Thap1	C	A	8: 26,648,502 (GRCm39)	Y8*	probably null	Het
Tln1	A	G	4: 43,536,397 (GRCm39)	L1965P	probably damaging	Het
Tmprss11d	A	G	5: 86,457,165 (GRCm39)	S303P	probably damaging	Het
Tomm40	C	T	7: 19,435,759 (GRCm39)	V324M	probably damaging	Het
Vmn1r202	A	T	13: 22,685,985 (GRCm39)	I144K	probably damaging	Het

Other mutations in Spopfm2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01744:Spopfm2	APN	3	94,083,544 (GRCm39)	missense	probably damaging	1.00
IGL02057:Spopfm2	APN	3	94,083,662 (GRCm39)	missense	probably damaging	1.00
R1983:Spopfm2	UTSW	3	94,083,601 (GRCm39)	missense	possibly damaging	0.89
R2102:Spopfm2	UTSW	3	94,082,973 (GRCm39)	nonsense	probably null
R2110:Spopfm2	UTSW	3	94,082,834 (GRCm39)	missense	probably damaging	0.99
R2172:Spopfm2	UTSW	3	94,083,605 (GRCm39)	missense	possibly damaging	0.68
R2358:Spopfm2	UTSW	3	94,082,855 (GRCm39)	missense	possibly damaging	0.61
R2358:Spopfm2	UTSW	3	94,082,854 (GRCm39)	missense	possibly damaging	0.81
R4534:Spopfm2	UTSW	3	94,083,757 (GRCm39)	missense	probably benign	0.39
R4939:Spopfm2	UTSW	3	94,083,540 (GRCm39)	nonsense	probably null
R4961:Spopfm2	UTSW	3	94,082,841 (GRCm39)	nonsense	probably null
R4993:Spopfm2	UTSW	3	94,083,623 (GRCm39)	missense	probably damaging	1.00
R7154:Spopfm2	UTSW	3	94,083,526 (GRCm39)	missense	probably benign	0.17
R7218:Spopfm2	UTSW	3	94,082,856 (GRCm39)	missense	possibly damaging	0.91
R7256:Spopfm2	UTSW	3	94,083,667 (GRCm39)	missense	probably benign	0.01
R7464:Spopfm2	UTSW	3	94,083,411 (GRCm39)	missense	probably benign	0.08
R7473:Spopfm2	UTSW	3	94,083,509 (GRCm39)	nonsense	probably null
R7596:Spopfm2	UTSW	3	94,083,737 (GRCm39)	missense	probably benign	0.12
R7974:Spopfm2	UTSW	3	94,082,848 (GRCm39)	missense	probably benign	0.18
R8497:Spopfm2	UTSW	3	94,083,119 (GRCm39)	missense	possibly damaging	0.93
R8519:Spopfm2	UTSW	3	94,083,497 (GRCm39)	missense	probably benign	0.05
R8686:Spopfm2	UTSW	3	94,083,427 (GRCm39)	missense	probably benign	0.01
R9223:Spopfm2	UTSW	3	94,082,950 (GRCm39)	missense	probably damaging	1.00
R9748:Spopfm2	UTSW	3	94,083,155 (GRCm39)	missense	probably damaging	0.99
Z1177:Spopfm2	UTSW	3	94,083,409 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- TGGTCATAGCTGTCCATCCC -3'
(R):5'- TCTTCAAGGAGATGATGGGCTTC -3'

Sequencing Primer
(F):5'- GGTCATAGCTGTCCATCCCCTAAAC -3'
(R):5'- TTCATCTACACTGGGAAGGCG -3'

Posted On

2020-10-20