Mutagenetix > Incidental Mutation

Incidental Mutation 'R8421:Gtf3c1'

653198

Institutional Source

Beutler Lab

Gene Symbol

Gtf3c1

Ensembl Gene

ENSMUSG00000032777

Gene Name

general transcription factor III C 1

Synonyms

MMRRC Submission

067898-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R8421 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

125240126-125306860 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 125298142 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 244 (L244P)

Ref Sequence

ENSEMBL: ENSMUSP00000056719 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055506] [ENSMUST00000205444] [ENSMUST00000205659] [ENSMUST00000206127]

AlphaFold

Q8K284

Predicted Effect

probably damaging
Transcript: ENSMUST00000055506
AA Change: L244P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000056719
Gene: ENSMUSG00000032777
AA Change: L244P

Domain	Start	End	E-Value	Type
Pfam:B-block_TFIIIC	174	250	5.1e-20	PFAM
low complexity region	344	354	N/A	INTRINSIC
low complexity region	474	514	N/A	INTRINSIC
low complexity region	538	549	N/A	INTRINSIC
low complexity region	592	604	N/A	INTRINSIC
low complexity region	725	745	N/A	INTRINSIC
low complexity region	859	872	N/A	INTRINSIC
low complexity region	1158	1173	N/A	INTRINSIC
low complexity region	1359	1372	N/A	INTRINSIC
low complexity region	1423	1443	N/A	INTRINSIC
low complexity region	1585	1620	N/A	INTRINSIC
low complexity region	1895	1915	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000205444
AA Change: L244P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000205659
AA Change: L244P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000206127
AA Change: L143P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.5%

Validation Efficiency

98% (56/57)

MGI Phenotype

PHENOTYPE: Mice homozygous for a transgenic gene disruption may exhibit preimplantation lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acin1	T	C	14: 54,880,486 (GRCm39)	E1239G	unknown	Het
Actn3	T	C	19: 4,911,741 (GRCm39)	M806V	probably benign	Het
Adcy7	A	G	8: 89,048,812 (GRCm39)	T676A	probably benign	Het
Ankef1	C	A	2: 136,379,085 (GRCm39)	Q12K	probably damaging	Het
Ankrd40	G	T	11: 94,225,662 (GRCm39)	G231V	probably damaging	Het
Atad5	T	A	11: 79,985,384 (GRCm39)	V157D	probably damaging	Het
Atp6v1b1	T	A	6: 83,730,791 (GRCm39)	M163K	probably damaging	Het
Atp7b	A	T	8: 22,518,487 (GRCm39)	M117K	probably benign	Het
Ccdc87	T	C	19: 4,891,313 (GRCm39)	Y602H	possibly damaging	Het
Cdh16	C	T	8: 105,348,602 (GRCm39)	R142K	probably benign	Het
Chrnb3	G	A	8: 27,886,718 (GRCm39)	V431I	probably damaging	Het
Csf1r	A	G	18: 61,260,966 (GRCm39)	D719G	probably damaging	Het
Ctsll3	A	G	13: 60,948,595 (GRCm39)	F88S	probably damaging	Het
Dglucy	A	G	12: 100,808,938 (GRCm39)	Y212C	probably damaging	Het
Dnase1l3	T	C	14: 7,968,122 (GRCm38)	D261G	possibly damaging	Het
Dync2h1	T	C	9: 7,102,477 (GRCm39)	D2641G	probably damaging	Het
Fat3	A	T	9: 15,909,480 (GRCm39)	V2174D	probably damaging	Het
Hcn4	T	A	9: 58,765,379 (GRCm39)	D620E	unknown	Het
Ide	A	G	19: 37,255,403 (GRCm39)	V800A		Het
Ikbkb	A	T	8: 23,168,804 (GRCm39)		probably null	Het
Lin9	T	A	1: 180,493,365 (GRCm39)	F197Y	probably damaging	Het
Lrp1b	T	A	2: 40,615,435 (GRCm39)	Y3656F		Het
Mapkbp1	C	A	2: 119,849,431 (GRCm39)	N708K	probably damaging	Het
Marveld3	A	G	8: 110,675,279 (GRCm39)	M179T	probably benign	Het
Mrpl1	C	G	5: 96,374,226 (GRCm39)	A167G	probably benign	Het
Mrpl35	T	C	6: 71,793,151 (GRCm39)	K167E	probably damaging	Het
Myo3a	T	C	2: 22,366,935 (GRCm39)	V594A	probably benign	Het
Nav2	A	G	7: 49,102,269 (GRCm39)	T356A	probably benign	Het
Nup210l	A	G	3: 90,111,174 (GRCm39)	Y1692C	probably damaging	Het
Or8k22	T	A	2: 86,163,247 (GRCm39)	Y151F	possibly damaging	Het
Otoa	G	A	7: 120,698,491 (GRCm39)		probably null	Het
Oxnad1	T	G	14: 31,821,431 (GRCm39)	I172S	probably benign	Het
Padi4	C	A	4: 140,475,533 (GRCm39)	C544F	probably damaging	Het
Pard3	A	C	8: 127,867,158 (GRCm39)		probably benign	Het
Plvap	G	A	8: 71,964,176 (GRCm39)	T62M	probably damaging	Het
Potefam1	T	A	2: 111,048,955 (GRCm39)	K275*	probably null	Het
Prdm8	C	T	5: 98,333,822 (GRCm39)	A463V	probably damaging	Het
Prss21	T	A	17: 24,088,342 (GRCm39)	D102E	possibly damaging	Het
Psmb10	G	T	8: 106,663,342 (GRCm39)	Q182K	probably benign	Het
Rasgrf1	C	T	9: 89,849,968 (GRCm39)	P319S	probably damaging	Het
Rock1	G	A	18: 10,072,863 (GRCm39)	Q1161*	probably null	Het
Ryr3	T	C	2: 112,826,929 (GRCm39)	E112G	probably benign	Het
Samm50	A	G	15: 84,094,786 (GRCm39)	T393A	probably benign	Het
Slc9c1	A	G	16: 45,413,734 (GRCm39)	E954G	probably damaging	Het
Sulf2	T	A	2: 165,958,972 (GRCm39)	I79F	probably benign	Het
Tbx21	T	C	11: 97,005,561 (GRCm39)	K135E	probably benign	Het
Ube2q2l	T	C	6: 136,378,350 (GRCm39)	E160G	probably damaging	Het
Unc13b	A	G	4: 43,178,304 (GRCm39)	E3044G	unknown	Het
Usf3	A	T	16: 44,037,572 (GRCm39)	Q684L	possibly damaging	Het
Vmn1r114	A	T	7: 20,545,459 (GRCm39)	M218K	possibly damaging	Het
Vmn1r203	T	G	13: 22,709,154 (GRCm39)	*312G	probably null	Het
Vmn2r67	A	C	7: 84,785,893 (GRCm39)	L704R	probably damaging	Het
Zfp618	A	G	4: 63,051,483 (GRCm39)	T755A	probably damaging	Het
Zp3	A	G	5: 136,017,331 (GRCm39)	T381A	probably benign	Het
Zscan20	T	C	4: 128,479,620 (GRCm39)	D957G	probably damaging	Het

Other mutations in Gtf3c1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00480:Gtf3c1	APN	7	125,243,430 (GRCm39)	missense	probably benign	0.15
IGL00535:Gtf3c1	APN	7	125,243,325 (GRCm39)	missense	probably benign	0.00
IGL00778:Gtf3c1	APN	7	125,266,546 (GRCm39)	missense	probably damaging	1.00
IGL00832:Gtf3c1	APN	7	125,253,632 (GRCm39)	splice site	probably benign
IGL01383:Gtf3c1	APN	7	125,298,672 (GRCm39)	missense	probably damaging	1.00
IGL01472:Gtf3c1	APN	7	125,250,226 (GRCm39)	splice site	probably benign
IGL01743:Gtf3c1	APN	7	125,262,587 (GRCm39)	missense	probably damaging	1.00
IGL01867:Gtf3c1	APN	7	125,261,548 (GRCm39)	missense	probably benign	0.44
IGL02016:Gtf3c1	APN	7	125,267,211 (GRCm39)	missense	probably damaging	1.00
IGL02096:Gtf3c1	APN	7	125,258,284 (GRCm39)	missense	probably damaging	0.98
IGL02121:Gtf3c1	APN	7	125,245,903 (GRCm39)	nonsense	probably null
IGL02226:Gtf3c1	APN	7	125,267,162 (GRCm39)	splice site	probably null
IGL02376:Gtf3c1	APN	7	125,268,168 (GRCm39)	missense	probably benign	0.41
IGL02581:Gtf3c1	APN	7	125,245,687 (GRCm39)	missense	possibly damaging	0.80
IGL02750:Gtf3c1	APN	7	125,275,684 (GRCm39)	missense	probably damaging	1.00
IGL03063:Gtf3c1	APN	7	125,245,675 (GRCm39)	missense	possibly damaging	0.72
IGL03167:Gtf3c1	APN	7	125,269,752 (GRCm39)	critical splice acceptor site	probably null
R0052:Gtf3c1	UTSW	7	125,267,143 (GRCm39)	splice site	probably null
R0266:Gtf3c1	UTSW	7	125,243,306 (GRCm39)	missense	possibly damaging	0.83
R0378:Gtf3c1	UTSW	7	125,246,786 (GRCm39)	nonsense	probably null
R0387:Gtf3c1	UTSW	7	125,280,276 (GRCm39)	missense	probably damaging	1.00
R0426:Gtf3c1	UTSW	7	125,262,188 (GRCm39)	nonsense	probably null
R0458:Gtf3c1	UTSW	7	125,243,306 (GRCm39)	missense	possibly damaging	0.83
R0613:Gtf3c1	UTSW	7	125,243,306 (GRCm39)	missense	possibly damaging	0.83
R0634:Gtf3c1	UTSW	7	125,256,649 (GRCm39)	unclassified	probably benign
R0658:Gtf3c1	UTSW	7	125,298,134 (GRCm39)	missense	probably damaging	1.00
R0904:Gtf3c1	UTSW	7	125,268,014 (GRCm39)	splice site	probably benign
R1051:Gtf3c1	UTSW	7	125,306,821 (GRCm39)	missense	probably damaging	1.00
R1481:Gtf3c1	UTSW	7	125,292,310 (GRCm39)	critical splice donor site	probably null
R1590:Gtf3c1	UTSW	7	125,275,833 (GRCm39)	missense	possibly damaging	0.90
R1782:Gtf3c1	UTSW	7	125,266,246 (GRCm39)	missense	probably damaging	1.00
R1981:Gtf3c1	UTSW	7	125,243,444 (GRCm39)	missense	possibly damaging	0.96
R2513:Gtf3c1	UTSW	7	125,280,345 (GRCm39)	missense	probably benign	0.01
R2697:Gtf3c1	UTSW	7	125,243,126 (GRCm39)	missense	probably damaging	0.98
R3963:Gtf3c1	UTSW	7	125,292,397 (GRCm39)	splice site	probably null
R4125:Gtf3c1	UTSW	7	125,246,622 (GRCm39)	nonsense	probably null
R4127:Gtf3c1	UTSW	7	125,246,622 (GRCm39)	nonsense	probably null
R4646:Gtf3c1	UTSW	7	125,258,266 (GRCm39)	missense	possibly damaging	0.66
R4653:Gtf3c1	UTSW	7	125,273,272 (GRCm39)	missense	probably benign	0.23
R4668:Gtf3c1	UTSW	7	125,266,510 (GRCm39)	missense	probably damaging	1.00
R4803:Gtf3c1	UTSW	7	125,262,712 (GRCm39)	missense	probably damaging	1.00
R5138:Gtf3c1	UTSW	7	125,246,664 (GRCm39)	missense	probably benign	0.05
R5149:Gtf3c1	UTSW	7	125,267,209 (GRCm39)	missense	probably damaging	0.99
R5286:Gtf3c1	UTSW	7	125,262,580 (GRCm39)	missense	possibly damaging	0.79
R5437:Gtf3c1	UTSW	7	125,266,540 (GRCm39)	missense	probably damaging	1.00
R5493:Gtf3c1	UTSW	7	125,269,716 (GRCm39)	missense	probably damaging	1.00
R5610:Gtf3c1	UTSW	7	125,303,117 (GRCm39)	missense	possibly damaging	0.94
R5656:Gtf3c1	UTSW	7	125,261,826 (GRCm39)	missense	probably benign	0.27
R5754:Gtf3c1	UTSW	7	125,243,237 (GRCm39)	missense	possibly damaging	0.86
R5969:Gtf3c1	UTSW	7	125,244,848 (GRCm39)	missense	possibly damaging	0.91
R6009:Gtf3c1	UTSW	7	125,246,602 (GRCm39)	missense	possibly damaging	0.66
R6223:Gtf3c1	UTSW	7	125,275,797 (GRCm39)	missense	probably benign	0.01
R6580:Gtf3c1	UTSW	7	125,243,519 (GRCm39)	missense	probably benign	0.02
R6628:Gtf3c1	UTSW	7	125,267,246 (GRCm39)	missense	probably benign	0.04
R6774:Gtf3c1	UTSW	7	125,240,793 (GRCm39)	missense	possibly damaging	0.93
R6781:Gtf3c1	UTSW	7	125,258,369 (GRCm39)	nonsense	probably null
R6978:Gtf3c1	UTSW	7	125,244,706 (GRCm39)	missense	possibly damaging	0.86
R7078:Gtf3c1	UTSW	7	125,244,914 (GRCm39)	missense	possibly damaging	0.95
R7096:Gtf3c1	UTSW	7	125,295,731 (GRCm39)	critical splice acceptor site	probably null
R7146:Gtf3c1	UTSW	7	125,271,993 (GRCm39)	missense	possibly damaging	0.48
R7246:Gtf3c1	UTSW	7	125,268,266 (GRCm39)
R7330:Gtf3c1	UTSW	7	125,303,055 (GRCm39)	missense	probably benign	0.36
R7345:Gtf3c1	UTSW	7	125,244,842 (GRCm39)	missense	probably damaging	1.00
R7480:Gtf3c1	UTSW	7	125,241,713 (GRCm39)	missense	probably benign	0.22
R7490:Gtf3c1	UTSW	7	125,246,663 (GRCm39)	missense	probably damaging	0.98
R7555:Gtf3c1	UTSW	7	125,244,842 (GRCm39)	missense	probably damaging	1.00
R7895:Gtf3c1	UTSW	7	125,271,994 (GRCm39)	missense	possibly damaging	0.94
R7949:Gtf3c1	UTSW	7	125,250,253 (GRCm39)	missense	probably benign
R8123:Gtf3c1	UTSW	7	125,303,196 (GRCm39)	start gained	probably benign
R8295:Gtf3c1	UTSW	7	125,262,234 (GRCm39)	missense	probably benign	0.01
R8438:Gtf3c1	UTSW	7	125,241,701 (GRCm39)	nonsense	probably null
R8517:Gtf3c1	UTSW	7	125,253,723 (GRCm39)	missense	probably damaging	1.00
R8970:Gtf3c1	UTSW	7	125,272,227 (GRCm39)	unclassified	probably benign
R9005:Gtf3c1	UTSW	7	125,303,069 (GRCm39)	missense	probably benign	0.25
R9156:Gtf3c1	UTSW	7	125,244,949 (GRCm39)	missense	possibly damaging	0.78
R9292:Gtf3c1	UTSW	7	125,273,563 (GRCm39)	intron	probably benign
R9400:Gtf3c1	UTSW	7	125,275,683 (GRCm39)	missense	probably damaging	0.96
R9658:Gtf3c1	UTSW	7	125,306,734 (GRCm39)	missense	probably damaging	1.00
R9660:Gtf3c1	UTSW	7	125,262,199 (GRCm39)	missense	possibly damaging	0.52
X0065:Gtf3c1	UTSW	7	125,240,862 (GRCm39)	missense	probably damaging	1.00
Z1176:Gtf3c1	UTSW	7	125,303,136 (GRCm39)	missense	probably damaging	0.99
Z1177:Gtf3c1	UTSW	7	125,266,294 (GRCm39)	missense	probably benign	0.15

Predicted Primers

PCR Primer
(F):5'- ACAACTTTGCCACTGTACCC -3'
(R):5'- ATGCTTGTATTCATGTGCAAGTGAG -3'

Sequencing Primer
(F):5'- TGCCACTGTACCCTATCAAATTAGG -3'
(R):5'- TTCATGTGCAAGTGAGAAACTAC -3'

Posted On

2020-10-20