Incidental Mutation 'R8424:H2ac4'
ID 653369
Institutional Source Beutler Lab
Gene Symbol H2ac4
Ensembl Gene ENSMUSG00000061615
Gene Name H2A clustered histone 4
Synonyms Hist1h2ab, H2A.1, H2a-53
MMRRC Submission 067818-MU
Accession Numbers
Essential gene? Not available question?
Stock # R8424 (G1)
Quality Score 225.009
Status Not validated
Chromosome 13
Chromosomal Location 23935109-23935581 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 23935267 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Cysteine at position 51 (Y51C)
Ref Sequence ENSEMBL: ENSMUSP00000077477 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000078369] [ENSMUST00000091703] [ENSMUST00000099703]
AlphaFold C0HKE1
C0HKE2
C0HKE3
C0HKE4
C0HKE5
C0HKE6
C0HKE7
C0HKE8
C0HKE9
Predicted Effect probably damaging
Transcript: ENSMUST00000078369
AA Change: Y51C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000077477
Gene: ENSMUSG00000061615
AA Change: Y51C

DomainStartEndE-ValueType
H2A 3 123 8.07e-81 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000091703
SMART Domains Protein: ENSMUSP00000089295
Gene: ENSMUSG00000069267

DomainStartEndE-ValueType
H3 34 136 2.12e-75 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000099703
SMART Domains Protein: ENSMUSP00000097294
Gene: ENSMUSG00000075031

DomainStartEndE-ValueType
H2B 28 124 4.64e-72 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.9%
Validation Efficiency
MGI Phenotype FUNCTION: Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. This structure consists of approximately 146 bp of DNA wrapped around a nucleosome, an octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H2A family. Transcripts from this gene lack polyA tails; instead, they contain a palindromic termination element. [provided by RefSeq, Aug 2015]
Allele List at MGI
Other mutations in this stock
Total: 50 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abhd2 C T 7: 78,946,885 (GRCm39) P42S probably damaging Het
Acss2 A G 2: 155,416,538 (GRCm39) T694A unknown Het
Adar C T 3: 89,643,301 (GRCm39) P394L probably damaging Het
Alx4 A G 2: 93,507,814 (GRCm39) M370V probably benign Het
Bag6 T A 17: 35,365,830 (GRCm39) L1089Q probably damaging Het
Bms1 T C 6: 118,365,721 (GRCm39) Y1155C probably benign Het
Cbl G A 9: 44,064,151 (GRCm39) T795I possibly damaging Het
Cd300ld2 CGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGTCAGAACTGTGGATGGCACAACTGTGCATGGCAGAACTGTGGATGGCACAACTGTGGATGGCAGAACTGTGG CGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGTCAGAACTGTGGATGGCACAACTGTGCATGGCAGAACTGTGGATGGCACAACTGTGGATGGCAGAACTGTGG 11: 114,903,257 (GRCm39) probably benign Het
Cdc5l C A 17: 45,726,526 (GRCm39) A349S probably benign Het
Cdh5 G A 8: 104,856,003 (GRCm39) R312H probably benign Het
Cdk5rap1 T C 2: 154,187,932 (GRCm39) T465A probably damaging Het
Cep135 C T 5: 76,741,906 (GRCm39) T114I possibly damaging Het
Csrp1 T C 1: 135,667,188 (GRCm39) V17A probably damaging Het
Cutal T C 2: 34,777,804 (GRCm39) S105P probably benign Het
Dgki C A 6: 36,827,850 (GRCm39) V1016L probably benign Het
Dnmt1 T C 9: 20,829,836 (GRCm39) N746S probably benign Het
Ep400 A T 5: 110,841,144 (GRCm39) V1796E unknown Het
Fam83a T A 15: 57,873,046 (GRCm39) S292T possibly damaging Het
Keap1 C A 9: 21,142,086 (GRCm39) R596L probably benign Het
Klhl5 A C 5: 65,320,305 (GRCm39) T620P probably benign Het
Lbhd1 T A 19: 8,861,341 (GRCm39) D16E possibly damaging Het
Nadk2 T C 15: 9,083,414 (GRCm39) V110A possibly damaging Het
Ncbp1 A T 4: 46,144,839 (GRCm39) H30L probably benign Het
Or5ac21 A T 16: 59,123,772 (GRCm39) L85F possibly damaging Het
Plat G T 8: 23,262,248 (GRCm39) G91W probably damaging Het
Pmp22 G T 11: 63,023,902 (GRCm39) probably benign Het
Rc3h1 C T 1: 160,793,342 (GRCm39) L1076F probably damaging Het
Ryr3 T C 2: 112,672,239 (GRCm39) I1431V possibly damaging Het
S100a7a T A 3: 90,562,868 (GRCm39) H18Q probably damaging Het
Scd2 G T 19: 44,289,743 (GRCm39) C246F probably benign Het
Serpina1c T C 12: 103,862,296 (GRCm39) T340A possibly damaging Het
Setd5 A G 6: 113,126,644 (GRCm39) E1227G probably benign Het
Sh3yl1 G A 12: 30,974,862 (GRCm39) R71H probably damaging Het
Spry2 A G 14: 106,130,836 (GRCm39) S117P probably damaging Het
Srcap T C 7: 127,141,560 (GRCm39) V1780A probably benign Het
Sting1 A C 18: 35,872,223 (GRCm39) I93S probably benign Het
Tas2r130 T G 6: 131,607,790 (GRCm39) T2P probably benign Het
Tiam2 T A 17: 3,566,316 (GRCm39) F1454I probably damaging Het
Tiam2 T C 17: 3,566,317 (GRCm39) F1454S probably damaging Het
Tnpo3 A G 6: 29,555,205 (GRCm39) S793P probably benign Het
Ttc28 G A 5: 111,381,207 (GRCm39) D1240N probably benign Het
Ubap2l A T 3: 89,928,338 (GRCm39) D535E probably damaging Het
Ube2h A G 6: 30,260,940 (GRCm39) S65P probably damaging Het
Vmn1r203 T C 13: 22,709,004 (GRCm39) S262P probably damaging Het
Wfdc8 A G 2: 164,445,078 (GRCm39) F179S probably benign Het
Wnk1 T C 6: 119,911,388 (GRCm39) T2153A unknown Het
Zfhx3 G T 8: 109,583,385 (GRCm39) G1084V probably damaging Het
Zfp273 A G 13: 67,970,471 (GRCm39) N40D probably benign Het
Zfp352 C T 4: 90,112,480 (GRCm39) P207S possibly damaging Het
Zfp952 T A 17: 33,222,191 (GRCm39) F223L probably benign Het
Other mutations in H2ac4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02108:H2ac4 APN 13 23,935,207 (GRCm39) missense probably benign 0.35
IGL03177:H2ac4 APN 13 23,935,509 (GRCm39) unclassified probably benign
R7213:H2ac4 UTSW 13 23,935,146 (GRCm39) missense unknown
R7367:H2ac4 UTSW 13 23,935,333 (GRCm39) missense possibly damaging 0.77
Predicted Primers PCR Primer
(F):5'- AATGCTTGCTGTTCAGTTGC -3'
(R):5'- AATCGCCAGATTACTTCCCC -3'

Sequencing Primer
(F):5'- CTTGCTGTTCAGTTGCAGAATTTAC -3'
(R):5'- TCTTCTTGGGCAGCAGC -3'
Posted On 2020-10-20