Incidental Mutation 'R8447:Sh2d3c'
| ID |
654527 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Sh2d3c
|
| Ensembl Gene |
ENSMUSG00000059013 |
| Gene Name |
SH2 domain containing 3C |
| Synonyms |
Cas/HEF1-associated signal transducer, Nsp3, Shep1, Chat, SH2-containing Eph receptor-binding protein 1 |
| MMRRC Submission |
067902-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R8447 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
32611072-32645008 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 32642671 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Alanine
at position 706
(T706A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000073866
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000009707]
[ENSMUST00000074248]
[ENSMUST00000091059]
[ENSMUST00000113242]
[ENSMUST00000156617]
[ENSMUST00000175763]
[ENSMUST00000177382]
|
| AlphaFold |
Q9QZS8 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000009707
|
| SMART Domains |
Protein: ENSMUSP00000009707
Gene: ENSMUSG00000009563
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
27 |
N/A |
INTRINSIC |
|
Pfam:Torsin
|
35 |
160 |
1.2e-54 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000074248
AA Change: T706A
PolyPhen 2
Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000073866
Gene: ENSMUSG00000059013
AA Change: T706A
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
11 |
18 |
N/A |
INTRINSIC |
|
low complexity region
|
22 |
43 |
N/A |
INTRINSIC |
|
low complexity region
|
86 |
98 |
N/A |
INTRINSIC |
|
low complexity region
|
117 |
132 |
N/A |
INTRINSIC |
|
low complexity region
|
190 |
207 |
N/A |
INTRINSIC |
|
SH2
|
213 |
301 |
7.8e-21 |
SMART |
|
low complexity region
|
333 |
348 |
N/A |
INTRINSIC |
|
low complexity region
|
400 |
415 |
N/A |
INTRINSIC |
|
low complexity region
|
422 |
436 |
N/A |
INTRINSIC |
|
low complexity region
|
474 |
487 |
N/A |
INTRINSIC |
|
RasGEF
|
576 |
849 |
8.18e-10 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000091059
|
| SMART Domains |
Protein: ENSMUSP00000088585
Gene: ENSMUSG00000039021
| Domain | Start | End | E-Value | Type |
|---|
|
TPR
|
75 |
108 |
2.26e-3 |
SMART |
|
TPR
|
109 |
142 |
4.09e-1 |
SMART |
|
TPR
|
150 |
183 |
8.3e-2 |
SMART |
|
TPR
|
218 |
251 |
4.44e1 |
SMART |
|
TPR
|
265 |
298 |
3.69e1 |
SMART |
|
TPR
|
299 |
332 |
1.08e1 |
SMART |
|
Blast:TPR
|
345 |
378 |
2e-10 |
BLAST |
|
TPR
|
379 |
412 |
1.02e-1 |
SMART |
|
TPR
|
420 |
453 |
7.27e0 |
SMART |
|
Blast:TPR
|
454 |
487 |
2e-12 |
BLAST |
|
low complexity region
|
631 |
644 |
N/A |
INTRINSIC |
|
low complexity region
|
666 |
679 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000113242
AA Change: T554A
PolyPhen 2
Score 0.946 (Sensitivity: 0.80; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000108868
Gene: ENSMUSG00000059013
AA Change: T554A
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
38 |
55 |
N/A |
INTRINSIC |
|
SH2
|
61 |
149 |
7.8e-21 |
SMART |
|
low complexity region
|
181 |
196 |
N/A |
INTRINSIC |
|
low complexity region
|
248 |
263 |
N/A |
INTRINSIC |
|
low complexity region
|
270 |
284 |
N/A |
INTRINSIC |
|
low complexity region
|
322 |
335 |
N/A |
INTRINSIC |
|
RasGEF
|
424 |
697 |
8.18e-10 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000140999
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000156617
|
| SMART Domains |
Protein: ENSMUSP00000122251
Gene: ENSMUSG00000009563
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
27 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000175763
|
| SMART Domains |
Protein: ENSMUSP00000135701
Gene: ENSMUSG00000009563
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
27 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000177382
|
| SMART Domains |
Protein: ENSMUSP00000134968
Gene: ENSMUSG00000009563
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
27 |
N/A |
INTRINSIC |
|
Pfam:Torsin
|
35 |
101 |
1.4e-25 |
PFAM |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.6%
- 20x: 98.7%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an adaptor protein and member of a cytoplasmic protein family involved in cell migration. The encoded protein contains a putative Src homology 2 (SH2) domain and guanine nucleotide exchange factor-like domain which allows this signaling protein to form a complex with scaffolding protein Crk-associated substrate. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit neonatal lethality with absence of gastric milk. Surviving mice exhibit abnormal olfactory bulb innervation, fewer gonadotrophin positive cells in the hypothalamus, and decreased testes size. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 53 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcb4 |
A |
C |
5: 8,957,278 (GRCm39) |
T136P |
probably damaging |
Het |
| Abcc3 |
A |
T |
11: 94,254,886 (GRCm39) |
L639Q |
possibly damaging |
Het |
| Adam10 |
T |
A |
9: 70,655,400 (GRCm39) |
N289K |
probably damaging |
Het |
| Akap12 |
A |
G |
10: 4,306,289 (GRCm39) |
E1138G |
probably benign |
Het |
| Akr1e1 |
C |
A |
13: 4,648,793 (GRCm39) |
L167F |
probably damaging |
Het |
| Cars1 |
T |
C |
7: 143,123,766 (GRCm39) |
K506E |
possibly damaging |
Het |
| Castor1 |
T |
C |
11: 4,170,165 (GRCm39) |
V81A |
probably damaging |
Het |
| Cfap46 |
C |
A |
7: 139,260,902 (GRCm39) |
R65S |
possibly damaging |
Het |
| Cfap57 |
C |
T |
4: 118,472,128 (GRCm39) |
V84I |
probably benign |
Het |
| Clec16a |
C |
A |
16: 10,559,487 (GRCm39) |
T920K |
probably benign |
Het |
| Coro2b |
C |
T |
9: 62,333,842 (GRCm39) |
E351K |
probably damaging |
Het |
| Diablo |
T |
C |
5: 123,655,829 (GRCm39) |
E163G |
probably damaging |
Het |
| Dnah6 |
A |
G |
6: 73,115,757 (GRCm39) |
L1547P |
probably damaging |
Het |
| Dynll2 |
G |
T |
11: 87,874,719 (GRCm39) |
D37E |
probably benign |
Het |
| Eml4 |
A |
T |
17: 83,755,656 (GRCm39) |
Q408L |
probably damaging |
Het |
| F2rl3 |
T |
C |
8: 73,489,963 (GRCm39) |
*397R |
probably null |
Het |
| Fance |
T |
A |
17: 28,545,155 (GRCm39) |
L127Q |
unknown |
Het |
| Fat4 |
T |
C |
3: 39,033,824 (GRCm39) |
V2492A |
possibly damaging |
Het |
| Ggta1 |
C |
T |
2: 35,292,573 (GRCm39) |
D245N |
probably damaging |
Het |
| Gli1 |
T |
C |
10: 127,166,106 (GRCm39) |
N1049S |
probably benign |
Het |
| Grin2c |
A |
G |
11: 115,148,215 (GRCm39) |
V354A |
probably benign |
Het |
| Kank4 |
T |
A |
4: 98,666,729 (GRCm39) |
I573F |
probably damaging |
Het |
| Kdm3a |
A |
G |
6: 71,588,881 (GRCm39) |
V376A |
probably benign |
Het |
| Kndc1 |
T |
C |
7: 139,481,121 (GRCm39) |
V69A |
probably damaging |
Het |
| Lcmt1 |
T |
A |
7: 123,020,825 (GRCm39) |
L250Q |
probably damaging |
Het |
| Ldhb |
A |
T |
6: 142,444,356 (GRCm39) |
V99D |
probably damaging |
Het |
| Lepr |
T |
C |
4: 101,671,688 (GRCm39) |
V904A |
probably benign |
Het |
| Lipe |
G |
T |
7: 25,080,017 (GRCm39) |
N710K |
probably damaging |
Het |
| Med1 |
C |
A |
11: 98,060,240 (GRCm39) |
D230Y |
probably damaging |
Het |
| Mpv17l |
T |
A |
16: 13,758,864 (GRCm39) |
I96K |
probably benign |
Het |
| Obox1 |
A |
T |
7: 15,289,541 (GRCm39) |
Q110L |
probably damaging |
Het |
| Or11h6 |
T |
C |
14: 50,880,008 (GRCm39) |
V84A |
probably benign |
Het |
| Or4f4b |
T |
A |
2: 111,314,101 (GRCm39) |
Y137N |
probably damaging |
Het |
| Or4k37 |
T |
A |
2: 111,159,307 (GRCm39) |
I181N |
possibly damaging |
Het |
| Or5t16 |
T |
A |
2: 86,818,885 (GRCm39) |
I212F |
probably benign |
Het |
| Or6c76 |
T |
G |
10: 129,612,371 (GRCm39) |
M211R |
possibly damaging |
Het |
| Or9s14 |
C |
A |
1: 92,535,494 (GRCm39) |
|
probably benign |
Het |
| Pah |
T |
C |
10: 87,417,827 (GRCm39) |
|
probably null |
Het |
| Pate1 |
A |
T |
9: 35,597,631 (GRCm39) |
N40K |
probably benign |
Het |
| Pclo |
C |
A |
5: 14,731,423 (GRCm39) |
D182E |
|
Het |
| Prl7a2 |
A |
T |
13: 27,849,941 (GRCm39) |
S44T |
possibly damaging |
Het |
| Pwp2 |
T |
A |
10: 78,007,873 (GRCm39) |
D894V |
probably benign |
Het |
| Ripor2 |
T |
A |
13: 24,907,771 (GRCm39) |
L1014Q |
probably damaging |
Het |
| Rpe |
G |
A |
1: 66,740,188 (GRCm39) |
|
probably null |
Het |
| Slc34a1 |
T |
C |
13: 24,006,309 (GRCm39) |
F445S |
possibly damaging |
Het |
| Spata20 |
C |
A |
11: 94,373,080 (GRCm39) |
L515F |
probably damaging |
Het |
| Tcf20 |
G |
A |
15: 82,737,437 (GRCm39) |
S1338F |
possibly damaging |
Het |
| Tm9sf2 |
C |
A |
14: 122,377,180 (GRCm39) |
P236Q |
probably damaging |
Het |
| Tmem135 |
T |
C |
7: 88,803,240 (GRCm39) |
Y311C |
probably damaging |
Het |
| Tmem245 |
T |
C |
4: 56,906,261 (GRCm39) |
Q548R |
probably benign |
Het |
| Tmem94 |
G |
T |
11: 115,688,023 (GRCm39) |
C1190F |
possibly damaging |
Het |
| Tmem94 |
G |
A |
11: 115,688,696 (GRCm39) |
R1301H |
probably benign |
Het |
| Zp3 |
G |
A |
5: 136,013,244 (GRCm39) |
G192E |
probably damaging |
Het |
|
| Other mutations in Sh2d3c |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01153:Sh2d3c
|
APN |
2 |
32,615,096 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02326:Sh2d3c
|
APN |
2 |
32,639,163 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
IGL03325:Sh2d3c
|
APN |
2 |
32,615,270 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0008:Sh2d3c
|
UTSW |
2 |
32,643,033 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0564:Sh2d3c
|
UTSW |
2 |
32,643,064 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0619:Sh2d3c
|
UTSW |
2 |
32,643,037 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1138:Sh2d3c
|
UTSW |
2 |
32,639,417 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1984:Sh2d3c
|
UTSW |
2 |
32,639,256 (GRCm39) |
nonsense |
probably null |
|
|
R3808:Sh2d3c
|
UTSW |
2 |
32,636,108 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4399:Sh2d3c
|
UTSW |
2 |
32,636,172 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4556:Sh2d3c
|
UTSW |
2 |
32,643,021 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R4840:Sh2d3c
|
UTSW |
2 |
32,611,172 (GRCm39) |
start codon destroyed |
probably null |
0.02 |
|
R5027:Sh2d3c
|
UTSW |
2 |
32,634,814 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5367:Sh2d3c
|
UTSW |
2 |
32,635,914 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6754:Sh2d3c
|
UTSW |
2 |
32,644,542 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6916:Sh2d3c
|
UTSW |
2 |
32,642,665 (GRCm39) |
nonsense |
probably null |
|
|
R7029:Sh2d3c
|
UTSW |
2 |
32,644,581 (GRCm39) |
makesense |
probably null |
|
|
R7047:Sh2d3c
|
UTSW |
2 |
32,611,172 (GRCm39) |
start codon destroyed |
probably null |
0.02 |
|
R7636:Sh2d3c
|
UTSW |
2 |
32,615,023 (GRCm39) |
missense |
probably benign |
0.17 |
|
R7893:Sh2d3c
|
UTSW |
2 |
32,639,388 (GRCm39) |
nonsense |
probably null |
|
|
R8072:Sh2d3c
|
UTSW |
2 |
32,643,150 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8115:Sh2d3c
|
UTSW |
2 |
32,615,276 (GRCm39) |
missense |
probably benign |
0.12 |
|
R8553:Sh2d3c
|
UTSW |
2 |
32,635,925 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9133:Sh2d3c
|
UTSW |
2 |
32,634,778 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R9475:Sh2d3c
|
UTSW |
2 |
32,643,039 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9710:Sh2d3c
|
UTSW |
2 |
32,635,889 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- CTGACTGACAGCCATACTCAG -3'
(R):5'- GGTAACCCTATCCTGTCCATGAC -3'
Sequencing Primer
(F):5'- AGCCATACTCAGCTGTCATTGTG -3'
(R):5'- TGTCCATGACAGAGCATACCTGG -3'
|
| Posted On |
2020-10-20 |
Incidental Mutation