Mutagenetix > Incidental Mutation

Incidental Mutation 'R0379:Sephs1'

65455

Institutional Source

Beutler Lab

Gene Symbol

Sephs1

Ensembl Gene

ENSMUSG00000026662

Gene Name

selenophosphate synthetase 1

Synonyms

1110046B24Rik, SPS1

MMRRC Submission

038585-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.888) question?

Stock #

R0379 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

4886375-4915368 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 4904371 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 250 (T250A)

Ref Sequence

ENSEMBL: ENSMUSP00000110671 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027973] [ENSMUST00000115019]

AlphaFold

Q8BH69

Predicted Effect

probably benign
Transcript: ENSMUST00000027973
AA Change: T250A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000027973
Gene: ENSMUSG00000026662
AA Change: T250A

Domain	Start	End	E-Value	Type
Pfam:AIRS	60	180	1.4e-11	PFAM
Pfam:AIRS_C	192	368	3.6e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000115019
AA Change: T250A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000110671
Gene: ENSMUSG00000026662
AA Change: T250A

Domain	Start	End	E-Value	Type
Pfam:AIRS	67	164	8.4e-13	PFAM
Pfam:AIRS_C	192	368	7.8e-29	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140045

Meta Mutation Damage Score

0.0952

Coding Region Coverage

1x: 99.1%
3x: 98.1%
10x: 95.7%
20x: 90.9%

Validation Efficiency

98% (79/81)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an enzyme that synthesizes selenophosphate from selenide and ATP. Selenophosphate is the selenium donor used to synthesize selenocysteine, which is co-translationally incorporated into selenoproteins at in-frame UGA codons. [provided by RefSeq, Sep 2010]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930512M02Rik	A	G	11: 11,539,365 (GRCm39)		probably benign	Het
Apba1	A	C	19: 23,912,194 (GRCm39)	N558T	probably damaging	Het
Arfgef2	T	A	2: 166,702,320 (GRCm39)		probably null	Het
Arsb	T	C	13: 94,077,135 (GRCm39)	S501P	probably benign	Het
Atp10b	A	G	11: 43,145,141 (GRCm39)	T1295A	probably benign	Het
Atp8b5	G	T	4: 43,361,898 (GRCm39)	R648L	probably damaging	Het
Bcl2a1b	T	C	9: 89,081,789 (GRCm39)	I126T	possibly damaging	Het
Brd9	T	C	13: 74,090,802 (GRCm39)		probably benign	Het
Cd93	T	C	2: 148,283,430 (GRCm39)		probably benign	Het
Chd5	A	G	4: 152,467,778 (GRCm39)	K1692R	probably benign	Het
Clcn4	T	C	7: 7,299,791 (GRCm39)	T13A	probably damaging	Het
Clec14a	A	G	12: 58,315,580 (GRCm39)	F14S	possibly damaging	Het
Clec4g	A	G	8: 3,768,440 (GRCm39)	V97A	probably benign	Het
Col24a1	G	A	3: 145,229,897 (GRCm39)	R1483K	possibly damaging	Het
Crem	A	T	18: 3,299,226 (GRCm39)	V82D	probably damaging	Het
Ctnna2	T	A	6: 77,618,423 (GRCm39)	T180S	probably benign	Het
Cybrd1	T	C	2: 70,960,099 (GRCm39)	I99T	probably benign	Het
Cyp4a32	G	A	4: 115,478,671 (GRCm39)	V468M	probably damaging	Het
Dlk1	A	G	12: 109,420,985 (GRCm39)		probably benign	Het
Dnaaf9	C	T	2: 130,627,466 (GRCm39)		probably benign	Het
Dnah7b	A	T	1: 46,179,336 (GRCm39)	Y1003F	probably benign	Het
Egfem1	A	C	3: 29,722,399 (GRCm39)	E376A	possibly damaging	Het
Etl4	T	A	2: 20,812,165 (GRCm39)	I1416K	probably damaging	Het
Fbxl4	A	G	4: 22,386,106 (GRCm39)	T238A	probably benign	Het
Fer1l6	A	G	15: 58,420,187 (GRCm39)	I33M	probably benign	Het
Fndc3a	A	G	14: 72,794,049 (GRCm39)	S830P	probably damaging	Het
Fras1	C	T	5: 96,903,368 (GRCm39)	R3082*	probably null	Het
Galnt13	T	C	2: 54,950,504 (GRCm39)	V395A	possibly damaging	Het
Gpd2	C	T	2: 57,235,275 (GRCm39)	T335I	probably damaging	Het
Gucy2d	C	A	7: 98,108,209 (GRCm39)		probably null	Het
Hydin	A	G	8: 111,235,759 (GRCm39)		probably benign	Het
Ints5	G	T	19: 8,874,497 (GRCm39)	V819L	possibly damaging	Het
Klhdc10	C	G	6: 30,450,669 (GRCm39)	Q292E	possibly damaging	Het
Lmbrd2	G	A	15: 9,149,566 (GRCm39)	A67T	probably benign	Het
Lrp1	T	G	10: 127,430,838 (GRCm39)	T404P	probably damaging	Het
Marchf7	T	C	2: 60,064,470 (GRCm39)	S249P	probably benign	Het
Mcm10	T	A	2: 5,013,434 (GRCm39)	K66M	probably benign	Het
Mtmr7	C	A	8: 41,004,642 (GRCm39)	D645Y	probably damaging	Het
Muc6	T	A	7: 141,216,868 (GRCm39)	I2602F	possibly damaging	Het
Myh13	G	A	11: 67,260,121 (GRCm39)		probably benign	Het
Myo18a	G	A	11: 77,741,632 (GRCm39)	V1776I	possibly damaging	Het
Ncapg2	T	C	12: 116,406,695 (GRCm39)	L957S	probably damaging	Het
Ncoa3	T	C	2: 165,896,422 (GRCm39)	S442P	probably damaging	Het
Or5t5	G	A	2: 86,616,079 (GRCm39)	E2K	probably benign	Het
Or6x1	G	A	9: 40,098,729 (GRCm39)	G106D	probably damaging	Het
Or7g32	T	A	9: 19,388,776 (GRCm39)	T257S	possibly damaging	Het
Pdcd6	G	T	13: 74,457,831 (GRCm39)	N113K	possibly damaging	Het
Pfkfb4	C	T	9: 108,856,810 (GRCm39)		probably benign	Het
Pfkm	A	G	15: 98,024,195 (GRCm39)	H401R	probably benign	Het
Phldb2	C	A	16: 45,601,814 (GRCm39)	D754Y	probably damaging	Het
Plekhb2	T	A	1: 34,902,195 (GRCm39)	M49K	probably damaging	Het
Polrmt	A	G	10: 79,573,445 (GRCm39)	S1057P	possibly damaging	Het
Prps1l1	A	G	12: 35,035,077 (GRCm39)	N64S	probably benign	Het
Prss3l	T	G	6: 41,422,190 (GRCm39)		probably benign	Het
Psg16	T	C	7: 16,864,583 (GRCm39)	S393P	probably benign	Het
Rundc1	C	T	11: 101,315,973 (GRCm39)	T15I	probably benign	Het
Scaf11	A	G	15: 96,329,697 (GRCm39)	L143S	probably damaging	Het
Serpinf1	T	G	11: 75,304,771 (GRCm39)	I197L	probably benign	Het
Siglec1	C	T	2: 130,916,445 (GRCm39)		probably benign	Het
Slc28a1	G	A	7: 80,787,925 (GRCm39)	V271I	probably benign	Het
Sntg1	T	C	1: 8,853,048 (GRCm39)	D34G	probably damaging	Het
Sptbn4	A	T	7: 27,059,161 (GRCm39)		probably benign	Het
Suclg1	T	C	6: 73,233,211 (GRCm39)	I51T	possibly damaging	Het
Syne1	C	T	10: 5,491,989 (GRCm39)	R9Q	probably damaging	Het
Trim47	T	A	11: 115,997,344 (GRCm39)	H470L	probably damaging	Het
Ttc41	T	A	10: 86,548,841 (GRCm39)	Y12N	possibly damaging	Het
Tubgcp2	T	C	7: 139,612,105 (GRCm39)	E69G	probably damaging	Het
Tubgcp3	G	A	8: 12,691,116 (GRCm39)	T474M	probably damaging	Het
Ubr5	A	T	15: 38,019,201 (GRCm39)	N777K	probably benign	Het
Ush2a	T	C	1: 188,184,016 (GRCm39)	L1440P	probably damaging	Het
Usp28	A	C	9: 48,935,367 (GRCm39)	D458A	possibly damaging	Het
Vcan	A	T	13: 89,851,665 (GRCm39)	D1098E	probably damaging	Het
Vmn1r73	C	T	7: 11,490,773 (GRCm39)	T197I	probably benign	Het
Vmn2r15	T	C	5: 109,434,344 (GRCm39)	S787G	probably damaging	Het
Vmn2r90	T	A	17: 17,948,401 (GRCm39)	I549N	probably damaging	Het
Vps33b	T	A	7: 79,933,162 (GRCm39)		probably null	Het
Zfp516	A	T	18: 83,005,795 (GRCm39)	K900*	probably null	Het
Zfp974	T	A	7: 27,610,357 (GRCm39)	N456I	probably damaging	Het

Other mutations in Sephs1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02525:Sephs1	APN	2	4,911,407 (GRCm39)	missense	probably damaging	0.99
IGL02654:Sephs1	APN	2	4,889,366 (GRCm39)	missense	probably benign	0.27
IGL03202:Sephs1	APN	2	4,894,074 (GRCm39)	missense	possibly damaging	0.88
IGL03368:Sephs1	APN	2	4,894,080 (GRCm39)	missense	possibly damaging	0.54
R0022:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0063:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0063:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0071:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0071:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0179:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0218:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0220:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0378:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0381:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0448:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0634:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0706:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R2117:Sephs1	UTSW	2	4,904,351 (GRCm39)	missense	probably benign
R4496:Sephs1	UTSW	2	4,911,494 (GRCm39)	missense	probably benign	0.03
R4632:Sephs1	UTSW	2	4,901,571 (GRCm39)	missense	probably benign	0.04
R5150:Sephs1	UTSW	2	4,904,321 (GRCm39)	missense	possibly damaging	0.92
R5219:Sephs1	UTSW	2	4,896,501 (GRCm39)	missense	probably benign	0.22
R5593:Sephs1	UTSW	2	4,898,098 (GRCm39)	missense	probably benign
R5628:Sephs1	UTSW	2	4,894,018 (GRCm39)	missense	probably benign	0.04
R5716:Sephs1	UTSW	2	4,889,389 (GRCm39)	missense	probably benign	0.04
R5852:Sephs1	UTSW	2	4,904,339 (GRCm39)	missense	possibly damaging	0.48
R5864:Sephs1	UTSW	2	4,910,393 (GRCm39)	missense	probably damaging	0.99
R8021:Sephs1	UTSW	2	4,911,434 (GRCm39)	missense	probably benign	0.01
R8475:Sephs1	UTSW	2	4,893,821 (GRCm39)	splice site	probably null
R8709:Sephs1	UTSW	2	4,889,402 (GRCm39)	missense	probably benign
R9376:Sephs1	UTSW	2	4,910,469 (GRCm39)	missense	probably benign	0.00
R9453:Sephs1	UTSW	2	4,889,174 (GRCm39)	start gained	probably benign
R9679:Sephs1	UTSW	2	4,898,105 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

Posted On

2013-08-08