Mutagenetix > Incidental Mutation

Incidental Mutation 'R8453:Igsf5'

654895

Institutional Source

Beutler Lab

Gene Symbol

Igsf5

Ensembl Gene

ENSMUSG00000000159

Gene Name

immunoglobulin superfamily, member 5

Synonyms

Igsf5, Jam4, 2010003D20Rik

MMRRC Submission

067904-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R8453 (G1)

Quality Score

216.009

Status

Validated

Chromosome

Chromosomal Location

96162868-96223321 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 96222996 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Arginine at position 360 (Q360R)

Ref Sequence

ENSEMBL: ENSMUSP00000109425 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000000161] [ENSMUST00000113773] [ENSMUST00000113794] [ENSMUST00000113795] [ENSMUST00000131567] [ENSMUST00000136292]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000000161

SMART Domains

Protein: ENSMUSP00000000161
Gene: ENSMUSG00000000157

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
EGF_like	24	63	3.95e1	SMART
PSI	24	74	2.88e-4	SMART
INB	32	419	7.05e-119	SMART
VWA	126	329	1.16e0	SMART
EGF_like	553	585	4.64e1	SMART
Integrin_B_tail	594	669	1.22e-9	SMART
transmembrane domain	672	694	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000113773

SMART Domains

Protein: ENSMUSP00000109403
Gene: ENSMUSG00000000157

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
EGF_like	24	63	3.95e1	SMART
PSI	24	74	2.88e-4	SMART
INB	32	419	7.05e-119	SMART
VWA	126	329	1.16e0	SMART
EGF_like	553	585	4.64e1	SMART
Integrin_B_tail	594	669	1.22e-9	SMART
transmembrane domain	672	694	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000113794
AA Change: Q360R

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000109425
Gene: ENSMUSG00000000159
AA Change: Q360R

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
IG	31	127	9.63e-6	SMART
IG	134	221	2.64e0	SMART
transmembrane domain	239	261	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000113795

SMART Domains

Protein: ENSMUSP00000109426
Gene: ENSMUSG00000000159

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
IG	31	125	4.74e-5	SMART
transmembrane domain	139	161	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000131567

SMART Domains

Protein: ENSMUSP00000114497
Gene: ENSMUSG00000000157

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
PSI	24	74	2.88e-4	SMART
INB	32	419	7.05e-119	SMART
VWA	126	329	1.16e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000136292
AA Change: Q80R

PolyPhen 2 Score 0.271 (Sensitivity: 0.91; Specificity: 0.88)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

100% (68/68)

MGI Phenotype

PHENOTYPE: Homozygous mutation of this gene results in no obvious abnormalities. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9630041A04Rik	G	T	9: 101,815,884 (GRCm39)	C23F	possibly damaging	Het
Adam29	T	C	8: 56,326,196 (GRCm39)	H86R	possibly damaging	Het
Alas1	C	T	9: 106,113,721 (GRCm39)	R508Q	possibly damaging	Het
Albfm1	A	T	5: 90,714,360 (GRCm39)	R123S	possibly damaging	Het
Ark2n	T	C	18: 77,761,604 (GRCm39)	E236G	probably damaging	Het
Bmp3	G	A	5: 99,003,282 (GRCm39)		probably null	Het
Bud13	A	G	9: 46,199,499 (GRCm39)	T287A	probably benign	Het
C3	T	C	17: 57,519,643 (GRCm39)	E1203G	probably benign	Het
Carmil2	A	C	8: 106,416,843 (GRCm39)	Q476P	probably damaging	Het
Ccdc187	T	A	2: 26,166,458 (GRCm39)	T707S	probably damaging	Het
Cfap43	A	T	19: 47,735,086 (GRCm39)	V1435E	probably damaging	Het
Chrm3	A	T	13: 9,927,267 (GRCm39)	*590K	probably null	Het
Commd1	C	T	11: 22,928,503 (GRCm39)		probably benign	Het
Creb3l1	A	T	2: 91,821,274 (GRCm39)	Y314*	probably null	Het
Ctc1	T	A	11: 68,913,275 (GRCm39)	S90R	probably benign	Het
Dixdc1	T	C	9: 50,596,186 (GRCm39)	Q413R	probably benign	Het
Dlg5	T	C	14: 24,208,213 (GRCm39)	T998A	probably benign	Het
Dnai4	A	G	4: 102,917,113 (GRCm39)	I577T	possibly damaging	Het
Eif1ad14	C	T	12: 87,886,323 (GRCm39)	S102N	probably benign	Het
Fam89b	A	G	19: 5,778,903 (GRCm39)	S99P	possibly damaging	Het
Fbxo30	A	G	10: 11,166,479 (GRCm39)	I400M	probably benign	Het
Gad1	A	T	2: 70,431,057 (GRCm39)	M567L	probably benign	Het
Gemin5	T	C	11: 58,016,065 (GRCm39)	S1314G	probably benign	Het
Gm9195	T	G	14: 72,678,201 (GRCm39)	I2323L	probably benign	Het
Gria1	T	A	11: 57,133,877 (GRCm39)	F585L	probably damaging	Het
Hbs1l	A	T	10: 21,185,178 (GRCm39)	H200L	probably benign	Het
Il31ra	A	T	13: 112,660,717 (GRCm39)	V624E	probably damaging	Het
Iqsec3	T	C	6: 121,364,779 (GRCm39)	R837G	probably damaging	Het
Itprid2	T	C	2: 79,475,129 (GRCm39)	S363P	probably benign	Het
Lpl	A	G	8: 69,348,433 (GRCm39)	I221V	probably damaging	Het
Mcf2l	T	C	8: 13,034,956 (GRCm39)		probably null	Het
Mink1	T	A	11: 70,501,154 (GRCm39)	D887E	possibly damaging	Het
Mmp10	T	G	9: 7,508,203 (GRCm39)	F443C	probably damaging	Het
Mmrn1	T	A	6: 60,965,361 (GRCm39)	Y1131N	probably damaging	Het
Mrc2	T	A	11: 105,223,137 (GRCm39)	V460E	probably damaging	Het
Nicn1	T	A	9: 108,170,572 (GRCm39)	F57Y	probably damaging	Het
Nlrp4b	A	G	7: 10,449,528 (GRCm39)	Y577C	probably damaging	Het
Nrap	T	C	19: 56,312,352 (GRCm39)	T1535A	probably damaging	Het
Opa1	G	A	16: 29,439,686 (GRCm39)	R755H	probably damaging	Het
P4htm	C	T	9: 108,457,566 (GRCm39)		probably benign	Het
Phldb2	A	G	16: 45,645,385 (GRCm39)	S354P	probably benign	Het
Phykpl	T	C	11: 51,489,121 (GRCm39)	S316P	probably damaging	Het
Pnpla1	T	A	17: 29,077,873 (GRCm39)	D11E	probably benign	Het
Pold2	A	G	11: 5,825,104 (GRCm39)	F98L	probably damaging	Het
Prph	G	A	15: 98,954,657 (GRCm39)	R241Q	probably benign	Het
Rcl1	T	C	19: 29,093,159 (GRCm39)	I58T	possibly damaging	Het
Rps6ka2	A	G	17: 7,514,151 (GRCm39)	N117D	probably benign	Het
Sars1	G	A	3: 108,336,029 (GRCm39)	S331L	probably benign	Het
Scfd1	A	C	12: 51,459,374 (GRCm39)	K312Q	possibly damaging	Het
Senp5	A	G	16: 31,808,166 (GRCm39)	C363R	probably benign	Het
Senp7	A	G	16: 56,008,691 (GRCm39)	I1024V	probably damaging	Het
Sh2b1	TGGGGACCAGCTCAGCCACGGGGACCAGCTC	TGGGGACCAGCTCAGCCACGGGGACCAGCTCAGCCACGGGGACCAGCTC	7: 126,066,742 (GRCm39)		probably benign	Het
Sptbn4	A	G	7: 27,103,663 (GRCm39)	L1191P	probably damaging	Het
Stk40	A	G	4: 126,022,766 (GRCm39)	E180G	probably damaging	Het
Stxbp5	A	T	10: 9,684,792 (GRCm39)	V536E	probably benign	Het
Suco	A	T	1: 161,650,586 (GRCm39)		probably benign	Het
Tex15	G	T	8: 34,066,899 (GRCm39)	E2110*	probably null	Het
Thbs4	G	A	13: 92,927,325 (GRCm39)	P55S	probably benign	Het
Tmem115	T	C	9: 107,411,997 (GRCm39)	V107A	probably benign	Het
Tnfaip6	A	C	2: 51,945,879 (GRCm39)	I242L	probably benign	Het
Trabd	G	T	15: 88,969,616 (GRCm39)	A270S	possibly damaging	Het
Trim30d	T	A	7: 104,136,947 (GRCm39)	I86F	probably damaging	Het
Trpc7	A	G	13: 56,970,372 (GRCm39)	V404A	probably benign	Het
Vmn1r61	A	G	7: 5,613,886 (GRCm39)	Y143H	probably benign	Het
Vmn2r18	T	A	5: 151,485,373 (GRCm39)	D707V	probably damaging	Het
Vnn3	G	A	10: 23,745,443 (GRCm39)	R464H	probably benign	Het
Wdr27	T	C	17: 15,112,751 (GRCm39)	T652A	probably benign	Het
Yeats2	C	T	16: 20,041,637 (GRCm39)	R1176*	probably null	Het

Other mutations in Igsf5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00477:Igsf5	APN	16	96,192,220 (GRCm39)	missense	possibly damaging	0.72
IGL01335:Igsf5	APN	16	96,174,353 (GRCm39)	splice site	probably benign
IGL02576:Igsf5	APN	16	96,187,781 (GRCm39)	missense	probably benign	0.23
IGL02721:Igsf5	APN	16	96,192,222 (GRCm39)	missense	probably damaging	0.98
IGL03289:Igsf5	APN	16	96,326,632 (GRCm39)	missense	possibly damaging	0.94
R0630:Igsf5	UTSW	16	96,174,023 (GRCm39)	splice site	probably benign
R1858:Igsf5	UTSW	16	96,187,829 (GRCm39)	splice site	probably null
R1961:Igsf5	UTSW	16	96,179,551 (GRCm39)	missense	probably damaging	1.00
R2508:Igsf5	UTSW	16	96,165,247 (GRCm39)	missense	probably benign	0.01
R4491:Igsf5	UTSW	16	96,165,281 (GRCm39)	missense	probably benign	0.02
R5123:Igsf5	UTSW	16	96,174,279 (GRCm39)	missense	probably damaging	1.00
R5262:Igsf5	UTSW	16	96,192,237 (GRCm39)	nonsense	probably null
R5384:Igsf5	UTSW	16	96,192,226 (GRCm39)	missense	probably benign	0.21
R5558:Igsf5	UTSW	16	96,187,731 (GRCm39)	missense	possibly damaging	0.95
R5950:Igsf5	UTSW	16	96,174,072 (GRCm39)	missense	probably benign	0.07
R5957:Igsf5	UTSW	16	96,165,249 (GRCm39)	missense	probably benign	0.10
R6199:Igsf5	UTSW	16	96,222,939 (GRCm39)	missense	possibly damaging	0.66
R6298:Igsf5	UTSW	16	96,197,648 (GRCm39)	missense	possibly damaging	0.93
R7164:Igsf5	UTSW	16	96,174,048 (GRCm39)	missense	possibly damaging	0.85
R7197:Igsf5	UTSW	16	96,204,546 (GRCm39)	missense	probably damaging	1.00
R8213:Igsf5	UTSW	16	96,174,188 (GRCm39)	missense	probably damaging	1.00
R8353:Igsf5	UTSW	16	96,222,996 (GRCm39)	missense	probably benign	0.00
R8823:Igsf5	UTSW	16	96,222,939 (GRCm39)	missense	possibly damaging	0.66
R9798:Igsf5	UTSW	16	96,174,075 (GRCm39)	missense	probably damaging	1.00
Z1176:Igsf5	UTSW	16	96,192,223 (GRCm39)	missense	probably damaging	1.00
Z1177:Igsf5	UTSW	16	96,179,533 (GRCm39)	missense	probably benign	0.06

Predicted Primers

PCR Primer
(F):5'- TGCATGAGTTACCCAGAGAAAC -3'
(R):5'- TCACCAGTGAGTTCTAGGGACC -3'

Sequencing Primer
(F):5'- ACACAGGCATGCTCATTCTC -3'
(R):5'- TGGACTCTCAGGATTCAAGTCAC -3'

Posted On

2020-10-20