Incidental Mutation 'R8508:Sgip1'
ID 655685
Institutional Source Beutler Lab
Gene Symbol Sgip1
Ensembl Gene ENSMUSG00000028524
Gene Name SH3-domain GRB2-like (endophilin) interacting protein 1
Synonyms 3110007P09Rik
MMRRC Submission 067844-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R8508 (G1)
Quality Score 225.009
Status Not validated
Chromosome 4
Chromosomal Location 102616351-102834623 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 102772268 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamine to Arginine at position 219 (Q219R)
Ref Sequence ENSEMBL: ENSMUSP00000063712 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000066824] [ENSMUST00000072481] [ENSMUST00000080728] [ENSMUST00000106882] [ENSMUST00000183855]
AlphaFold Q8VD37
Predicted Effect probably benign
Transcript: ENSMUST00000066824
AA Change: Q219R

PolyPhen 2 Score 0.144 (Sensitivity: 0.92; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000063712
Gene: ENSMUSG00000028524
AA Change: Q219R

DomainStartEndE-ValueType
low complexity region 51 62 N/A INTRINSIC
low complexity region 102 112 N/A INTRINSIC
low complexity region 148 160 N/A INTRINSIC
low complexity region 241 262 N/A INTRINSIC
low complexity region 281 308 N/A INTRINSIC
low complexity region 313 330 N/A INTRINSIC
low complexity region 332 353 N/A INTRINSIC
Pfam:muHD 391 658 5.9e-79 PFAM
Pfam:Adap_comp_sub 469 650 1.9e-9 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000072481
AA Change: Q219R
SMART Domains Protein: ENSMUSP00000072301
Gene: ENSMUSG00000028524
AA Change: Q219R

DomainStartEndE-ValueType
low complexity region 51 62 N/A INTRINSIC
low complexity region 102 112 N/A INTRINSIC
low complexity region 148 160 N/A INTRINSIC
low complexity region 241 262 N/A INTRINSIC
low complexity region 281 308 N/A INTRINSIC
low complexity region 313 330 N/A INTRINSIC
low complexity region 332 353 N/A INTRINSIC
Pfam:muHD 371 638 5.5e-79 PFAM
Pfam:Adap_comp_sub 449 630 1.8e-9 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000080728
AA Change: Q220R
SMART Domains Protein: ENSMUSP00000079553
Gene: ENSMUSG00000028524
AA Change: Q220R

DomainStartEndE-ValueType
low complexity region 52 63 N/A INTRINSIC
low complexity region 103 113 N/A INTRINSIC
low complexity region 149 161 N/A INTRINSIC
low complexity region 242 263 N/A INTRINSIC
low complexity region 335 366 N/A INTRINSIC
low complexity region 423 443 N/A INTRINSIC
low complexity region 448 475 N/A INTRINSIC
low complexity region 480 497 N/A INTRINSIC
low complexity region 499 520 N/A INTRINSIC
Pfam:muHD 538 805 9e-79 PFAM
Pfam:Adap_comp_sub 617 797 2.7e-9 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000106882
AA Change: Q220R

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
SMART Domains Protein: ENSMUSP00000102495
Gene: ENSMUSG00000028524
AA Change: Q220R

DomainStartEndE-ValueType
low complexity region 52 63 N/A INTRINSIC
low complexity region 103 113 N/A INTRINSIC
low complexity region 149 161 N/A INTRINSIC
low complexity region 242 263 N/A INTRINSIC
low complexity region 335 366 N/A INTRINSIC
low complexity region 423 443 N/A INTRINSIC
low complexity region 448 475 N/A INTRINSIC
low complexity region 480 497 N/A INTRINSIC
low complexity region 499 520 N/A INTRINSIC
Pfam:muHD 558 825 1.7e-74 PFAM
Pfam:Adap_comp_sub 657 809 1.2e-9 PFAM
Predicted Effect
SMART Domains Protein: ENSMUSP00000122556
Gene: ENSMUSG00000028524
AA Change: Q112R

DomainStartEndE-ValueType
low complexity region 4 14 N/A INTRINSIC
low complexity region 135 156 N/A INTRINSIC
low complexity region 175 202 N/A INTRINSIC
low complexity region 207 224 N/A INTRINSIC
low complexity region 226 247 N/A INTRINSIC
Pfam:muHD 307 574 3.9e-75 PFAM
Pfam:Adap_comp_sub 404 558 3.2e-10 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000183855
SMART Domains Protein: ENSMUSP00000139337
Gene: ENSMUSG00000028524

DomainStartEndE-ValueType
low complexity region 52 63 N/A INTRINSIC
low complexity region 103 113 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.0%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] SGIP1 functions as an endocytic protein that affects signaling by receptors in neuronal systems involved in energy homeostasis via its interaction with endophilins (see SH3GL3; MIM 603362) (Trevaskis et al., 2005 [PubMed 15919751] and Uezu et al., 2007 [PubMed 17626015]).[supplied by OMIM, Mar 2008]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4932438H23Rik T G 16: 90,852,500 (GRCm39) Y212S probably damaging Het
Angpt1 T C 15: 42,375,795 (GRCm39) N154D probably damaging Het
Angpt2 G A 8: 18,791,135 (GRCm39) R54* probably null Het
Ankrd27 T A 7: 35,301,051 (GRCm39) L117* probably null Het
Arhgap21 C T 2: 20,858,991 (GRCm39) M1234I probably benign Het
Arhgef33 A G 17: 80,674,764 (GRCm39) E387G probably damaging Het
Atp13a4 T A 16: 29,273,587 (GRCm39) K444* probably null Het
Atp6v1a G A 16: 43,922,225 (GRCm39) R338C probably damaging Het
Canx T C 11: 50,202,474 (GRCm39) D44G possibly damaging Het
Ccdc141 T A 2: 76,962,588 (GRCm39) M119L probably benign Het
Ckmt1 A C 2: 121,193,172 (GRCm39) Q299P possibly damaging Het
Dhx16 T C 17: 36,196,812 (GRCm39) S601P probably damaging Het
Dna2 A C 10: 62,786,673 (GRCm39) R140S probably damaging Het
Dock1 A G 7: 134,384,138 (GRCm39) T670A probably benign Het
Eif1ad10 T G 12: 88,216,455 (GRCm39) E139A unknown Het
Eogt A G 6: 97,120,959 (GRCm39) S85P possibly damaging Het
Fbf1 A T 11: 116,056,707 (GRCm39) M1K probably null Het
Fbxl12 C A 9: 20,550,160 (GRCm39) R165L possibly damaging Het
Flnb G A 14: 7,950,394 (GRCm38) V2571I probably damaging Het
Gm43518 A G 5: 124,076,322 (GRCm39) E123G unknown Het
Gpatch2 A G 1: 187,036,552 (GRCm39) N374S probably benign Het
Hey1 G C 3: 8,729,836 (GRCm39) A207G probably benign Het
Hoxa11 T C 6: 52,222,782 (GRCm39) probably benign Het
Hydin G A 8: 111,308,650 (GRCm39) V3979I probably benign Het
Ighe C T 12: 113,235,413 (GRCm39) W277* probably null Het
Kmt2c G T 5: 25,519,120 (GRCm39) T2330K probably benign Het
Krt6a T A 15: 101,601,170 (GRCm39) K261M probably damaging Het
Lats2 A C 14: 57,960,162 (GRCm39) S161A probably benign Het
Med13l T A 5: 118,892,386 (GRCm39) D1936E probably benign Het
Mipol1 T C 12: 57,352,874 (GRCm39) V71A possibly damaging Het
Mphosph8 A T 14: 56,914,003 (GRCm39) K415* probably null Het
Npepps A G 11: 97,135,252 (GRCm39) probably null Het
Ntn4 A T 10: 93,576,966 (GRCm39) N545Y possibly damaging Het
Or11g1 A C 14: 50,651,132 (GRCm39) M44L probably benign Het
Or1n1b A G 2: 36,780,366 (GRCm39) S165P probably damaging Het
Or2m12 T C 16: 19,105,451 (GRCm39) D14G probably benign Het
Or9i2 A T 19: 13,815,766 (GRCm39) M257K possibly damaging Het
Osbpl2 T A 2: 179,797,136 (GRCm39) V358E possibly damaging Het
Pdcd11 C A 19: 47,108,245 (GRCm39) P1204Q probably damaging Het
Pnliprp2 A C 19: 58,751,806 (GRCm39) S184R probably damaging Het
Ppm1g G T 5: 31,361,872 (GRCm39) R373S probably damaging Het
Rnf130 A G 11: 49,978,264 (GRCm39) D275G probably damaging Het
Rps18-ps5 A G 13: 28,441,694 (GRCm39) I26V probably benign Het
Setd5 T C 6: 113,098,048 (GRCm39) S696P probably damaging Het
Slc1a2 T C 2: 102,566,430 (GRCm39) probably null Het
Slc22a12 T C 19: 6,592,467 (GRCm39) T106A probably benign Het
Slc22a14 A G 9: 119,009,651 (GRCm39) L148P probably damaging Het
Slc2a9 A T 5: 38,539,421 (GRCm39) F375I probably damaging Het
Sorbs3 A T 14: 70,440,396 (GRCm39) D117E probably benign Het
Spata31d1e A G 13: 59,891,412 (GRCm39) L136P probably benign Het
Sphkap G A 1: 83,254,221 (GRCm39) T1176I probably damaging Het
Supt16 A T 14: 52,419,046 (GRCm39) V193D probably damaging Het
Sytl3 A G 17: 6,995,690 (GRCm39) T362A probably damaging Het
Tctn1 T A 5: 122,384,674 (GRCm39) Q410L probably benign Het
Trbc2 T C 6: 41,524,711 (GRCm39) Y133H Het
Ttc28 G A 5: 111,381,207 (GRCm39) D1240N probably benign Het
Vmn2r120 A G 17: 57,832,843 (GRCm39) V112A probably benign Het
Zfp354b A T 11: 50,814,297 (GRCm39) S209R probably benign Het
Zfp362 T C 4: 128,668,399 (GRCm39) H391R probably damaging Het
Other mutations in Sgip1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00847:Sgip1 APN 4 102,786,118 (GRCm39) splice site probably benign
IGL01348:Sgip1 APN 4 102,772,353 (GRCm39) splice site probably null
IGL01446:Sgip1 APN 4 102,786,110 (GRCm39) critical splice donor site probably null
IGL01937:Sgip1 APN 4 102,823,439 (GRCm39) missense probably damaging 1.00
IGL01945:Sgip1 APN 4 102,823,439 (GRCm39) missense probably damaging 1.00
IGL02249:Sgip1 APN 4 102,768,667 (GRCm39) missense probably benign 0.40
IGL03232:Sgip1 APN 4 102,772,251 (GRCm39) splice site probably benign
3-1:Sgip1 UTSW 4 102,824,860 (GRCm39) missense probably damaging 1.00
PIT4378001:Sgip1 UTSW 4 102,778,280 (GRCm39) missense unknown
R0309:Sgip1 UTSW 4 102,772,354 (GRCm39) splice site probably benign
R0689:Sgip1 UTSW 4 102,823,449 (GRCm39) missense probably damaging 1.00
R1563:Sgip1 UTSW 4 102,823,457 (GRCm39) missense probably benign 0.38
R1715:Sgip1 UTSW 4 102,772,256 (GRCm39) missense probably benign 0.09
R1899:Sgip1 UTSW 4 102,825,534 (GRCm39) critical splice donor site probably null
R2286:Sgip1 UTSW 4 102,724,844 (GRCm39) missense possibly damaging 0.95
R2372:Sgip1 UTSW 4 102,766,988 (GRCm39) critical splice donor site probably null
R3836:Sgip1 UTSW 4 102,724,897 (GRCm39) splice site probably null
R4670:Sgip1 UTSW 4 102,726,951 (GRCm39) missense probably damaging 1.00
R4697:Sgip1 UTSW 4 102,791,784 (GRCm39) missense probably damaging 1.00
R4725:Sgip1 UTSW 4 102,823,419 (GRCm39) missense probably damaging 1.00
R4892:Sgip1 UTSW 4 102,823,431 (GRCm39) missense probably damaging 1.00
R5112:Sgip1 UTSW 4 102,726,966 (GRCm39) missense probably damaging 1.00
R5236:Sgip1 UTSW 4 102,784,784 (GRCm39) critical splice donor site probably null
R5285:Sgip1 UTSW 4 102,778,674 (GRCm39) unclassified probably benign
R5323:Sgip1 UTSW 4 102,823,477 (GRCm39) missense probably damaging 1.00
R5384:Sgip1 UTSW 4 102,791,763 (GRCm39) missense possibly damaging 0.46
R5386:Sgip1 UTSW 4 102,772,256 (GRCm39) missense probably benign 0.09
R5682:Sgip1 UTSW 4 102,824,847 (GRCm39) missense possibly damaging 0.88
R6226:Sgip1 UTSW 4 102,823,392 (GRCm39) missense probably damaging 1.00
R6371:Sgip1 UTSW 4 102,823,482 (GRCm39) missense probably damaging 1.00
R6594:Sgip1 UTSW 4 102,819,676 (GRCm39) missense probably damaging 0.98
R6656:Sgip1 UTSW 4 102,762,765 (GRCm39) intron probably benign
R6800:Sgip1 UTSW 4 102,778,225 (GRCm39) unclassified probably benign
R6855:Sgip1 UTSW 4 102,819,573 (GRCm39) missense probably damaging 0.99
R6917:Sgip1 UTSW 4 102,825,388 (GRCm39) missense probably damaging 1.00
R7340:Sgip1 UTSW 4 102,778,661 (GRCm39) missense unknown
R7414:Sgip1 UTSW 4 102,824,821 (GRCm39) nonsense probably null
R7612:Sgip1 UTSW 4 102,727,005 (GRCm39) missense probably benign 0.28
R7936:Sgip1 UTSW 4 102,786,097 (GRCm39) missense possibly damaging 0.66
R7944:Sgip1 UTSW 4 102,772,298 (GRCm39) missense probably benign
R7976:Sgip1 UTSW 4 102,757,736 (GRCm39) critical splice donor site probably null
R8997:Sgip1 UTSW 4 102,790,781 (GRCm39) missense
Predicted Primers PCR Primer
(F):5'- AGGCCTGTTCTCTGTCTAAAGAG -3'
(R):5'- CCCAGCTTAGAGAACCTGATCTAG -3'

Sequencing Primer
(F):5'- CTGTCTAAAGAGTGTGTGCAGCATAG -3'
(R):5'- TCTAGTCTGTTAGATAGTAATGCCTC -3'
Posted On 2020-10-20