Mutagenetix > Incidental Mutation

Incidental Mutation 'R8516:Clk4'

656162

Institutional Source

Beutler Lab

Gene Symbol

Clk4

Ensembl Gene

ENSMUSG00000020385

Gene Name

CDC like kinase 4

Synonyms

MMRRC Submission

067848-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.738) question?

Stock #

R8516 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

51153941-51172597 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 51166088 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glutamine at position 198 (R198Q)

Ref Sequence

ENSEMBL: ENSMUSP00000090820 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000093132] [ENSMUST00000109111] [ENSMUST00000109113] [ENSMUST00000126131] [ENSMUST00000130641] [ENSMUST00000148053] [ENSMUST00000153414]

AlphaFold

O35493

Predicted Effect

probably damaging
Transcript: ENSMUST00000093132
AA Change: R198Q

PolyPhen 2 Score 0.973 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000090820
Gene: ENSMUSG00000020385
AA Change: R198Q

Domain	Start	End	E-Value	Type
low complexity region	22	36	N/A	INTRINSIC
low complexity region	63	80	N/A	INTRINSIC
low complexity region	102	119	N/A	INTRINSIC
low complexity region	123	138	N/A	INTRINSIC
S_TKc	159	475	1.58e-76	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000109111
AA Change: R18Q

PolyPhen 2 Score 0.973 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000104739
Gene: ENSMUSG00000020385
AA Change: R18Q

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	1	225	3.3e-20	PFAM
Pfam:Pkinase	1	295	5.4e-60	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000109113
AA Change: R18Q

PolyPhen 2 Score 0.973 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000104741
Gene: ENSMUSG00000020385
AA Change: R18Q

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	1	225	3.3e-20	PFAM
Pfam:Pkinase	1	295	5.4e-60	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000126131

SMART Domains

Protein: ENSMUSP00000118972
Gene: ENSMUSG00000020385

Domain	Start	End	E-Value	Type
low complexity region	63	74	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000130641

SMART Domains

Protein: ENSMUSP00000123133
Gene: ENSMUSG00000020385

Domain	Start	End	E-Value	Type
low complexity region	66	83	N/A	INTRINSIC
low complexity region	105	122	N/A	INTRINSIC
low complexity region	126	141	N/A	INTRINSIC
PDB:2VAG\|A	149	182	2e-14	PDB
SCOP:d1howa_	149	182	2e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000148053

SMART Domains

Protein: ENSMUSP00000120822
Gene: ENSMUSG00000020385

Domain	Start	End	E-Value	Type
low complexity region	89	100	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000153414

SMART Domains

Protein: ENSMUSP00000115894
Gene: ENSMUSG00000020385

Domain	Start	End	E-Value	Type
low complexity region	89	100	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the CDC2-like protein kinase (CLK) family. This protein kinase can interact with and phosphorylate the serine- and arginine-rich (SR) proteins, which are known to play an important role in the formation of spliceosomes, and thus may be involved in the regulation of alternative splicing. Studies in the Israeli sand rat Psammomys obesus suggested that the ubiquitin-like 5 (UBL5/BEACON), a highly conserved ubiquitin-like protein, may interact with and regulate the activity of this kinase. Multiple alternatively spliced transcript variants have been observed, but the full-length natures of which have not yet been determined. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aasdhppt	A	T	9: 4,309,373 (GRCm39)	S22T	probably benign	Het
Acte1	T	A	7: 143,451,011 (GRCm39)	I342N	probably damaging	Het
Actr8	G	T	14: 29,712,856 (GRCm39)	A500S	probably benign	Het
Adamtsl1	A	G	4: 86,260,780 (GRCm39)	Y1005C	probably damaging	Het
Ank3	T	A	10: 69,763,559 (GRCm39)	Y884*	probably null	Het
Arhgap28	T	C	17: 68,180,068 (GRCm39)	R306G	probably benign	Het
Atp8a2	A	C	14: 59,928,921 (GRCm39)	I1044M	probably benign	Het
Bahd1	A	G	2: 118,747,452 (GRCm39)	Y357C	probably benign	Het
Btd	A	T	14: 31,388,824 (GRCm39)	T182S	probably damaging	Het
Casc3	C	T	11: 98,713,607 (GRCm39)	R280C	probably damaging	Het
Cisd2	T	C	3: 135,116,774 (GRCm39)	T106A	probably damaging	Het
Cldn15	G	T	5: 137,003,550 (GRCm39)	C184F	probably damaging	Het
Coprs	G	T	8: 13,935,065 (GRCm39)	F163L	probably damaging	Het
Csmd3	G	A	15: 47,492,761 (GRCm39)	R2216*	probably null	Het
Defb7	A	T	8: 19,547,623 (GRCm39)	I43F	possibly damaging	Het
Dpp8	C	A	9: 64,985,291 (GRCm39)	T783K	probably damaging	Het
Eif2s1	G	A	12: 78,927,936 (GRCm39)	G204D	probably damaging	Het
Elavl4	T	C	4: 110,108,576 (GRCm39)	N56S	probably damaging	Het
Emilin1	G	A	5: 31,074,515 (GRCm39)	R252H	probably damaging	Het
Exd1	A	T	2: 119,350,554 (GRCm39)	L569Q	probably damaging	Het
Gpn2	C	T	4: 133,312,142 (GRCm39)	R125C	probably damaging	Het
Gria2	T	C	3: 80,614,294 (GRCm39)	E582G	probably benign	Het
Hadha	A	T	5: 30,331,582 (GRCm39)	V458E	probably damaging	Het
Hap1	T	C	11: 100,246,893 (GRCm39)	K4R	possibly damaging	Het
Hectd4	A	T	5: 121,487,073 (GRCm39)	H3356L	possibly damaging	Het
Herc2	G	A	7: 55,856,318 (GRCm39)	V3919I	probably benign	Het
Lgr6	G	T	1: 135,003,021 (GRCm39)	N76K	probably damaging	Het
Or52w1	A	G	7: 105,017,976 (GRCm39)	I148V	probably benign	Het
P4ha3	A	G	7: 99,963,869 (GRCm39)	M462V	probably damaging	Het
Pde3b	A	T	7: 114,126,084 (GRCm39)	M773L	probably benign	Het
Peak1	T	C	9: 56,167,284 (GRCm39)	S215G	probably damaging	Het
Pgm5	T	A	19: 24,793,074 (GRCm39)	M331L	probably benign	Het
Piwil2	A	G	14: 70,658,188 (GRCm39)	V213A	probably benign	Het
Plch2	T	C	4: 155,070,764 (GRCm39)	H1205R	probably benign	Het
Pop4	A	T	7: 37,966,826 (GRCm39)	M85K	probably benign	Het
Ppp3ca	T	A	3: 136,583,529 (GRCm39)	I212N	probably damaging	Het
Prom1	T	C	5: 44,164,441 (GRCm39)	K714R	probably benign	Het
Psip1	C	T	4: 83,384,952 (GRCm39)	G207S	probably benign	Het
Rgs22	A	G	15: 36,010,481 (GRCm39)	*1259Q	probably null	Het
Scn1a	C	T	2: 66,156,478 (GRCm39)	G477D	possibly damaging	Het
Sf3b1	T	C	1: 55,051,262 (GRCm39)	E222G	probably null	Het
Snrpa1	G	A	7: 65,720,381 (GRCm39)	G195R	probably benign	Het
Spem2	T	C	11: 69,707,721 (GRCm39)	R415G	possibly damaging	Het
Tmem167	T	A	13: 90,246,515 (GRCm39)	V13E	probably damaging	Het
Trim2	C	T	3: 84,115,627 (GRCm39)	A102T	probably damaging	Het
Trim30b	A	G	7: 104,006,611 (GRCm39)	S82P	probably benign	Het
Uba6	A	C	5: 86,275,607 (GRCm39)	S760R	possibly damaging	Het
Upf2	T	C	2: 6,023,782 (GRCm39)	F711L	unknown	Het
Utrn	T	A	10: 12,362,254 (GRCm39)	D2693V	probably damaging	Het
Vmn1r30	T	G	6: 58,412,109 (GRCm39)	Y241S	probably damaging	Het
Vmn2r110	A	G	17: 20,794,875 (GRCm39)	L598P	probably damaging	Het
Wfdc18	T	A	11: 83,599,984 (GRCm39)	F14Y	probably benign	Het
Wnt10b	A	T	15: 98,670,761 (GRCm39)	C256S	probably damaging	Het
Xrn1	T	A	9: 95,930,444 (GRCm39)	Y1554*	probably null	Het
Zc3h12a	T	A	4: 125,013,632 (GRCm39)	S411C	probably damaging	Het
Zfp112	G	A	7: 23,823,389 (GRCm39)	G63E	probably benign	Het
Zfp786	A	T	6: 47,797,477 (GRCm39)	L487Q	probably damaging	Het
Zfp953	T	A	13: 67,493,419 (GRCm39)	Y75F	possibly damaging	Het

Other mutations in Clk4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01368:Clk4	APN	11	51,171,999 (GRCm39)	nonsense	probably null
B6819:Clk4	UTSW	11	51,166,593 (GRCm39)	unclassified	probably benign
K7894:Clk4	UTSW	11	51,166,593 (GRCm39)	unclassified	probably benign
R0001:Clk4	UTSW	11	51,159,592 (GRCm39)	splice site	probably benign
R0466:Clk4	UTSW	11	51,158,155 (GRCm39)	missense	possibly damaging	0.59
R0692:Clk4	UTSW	11	51,172,155 (GRCm39)	nonsense	probably null
R0719:Clk4	UTSW	11	51,166,320 (GRCm39)	nonsense	probably null
R0723:Clk4	UTSW	11	51,166,320 (GRCm39)	nonsense	probably null
R1277:Clk4	UTSW	11	51,158,016 (GRCm39)	missense	probably benign
R1714:Clk4	UTSW	11	51,171,245 (GRCm39)	missense	probably damaging	1.00
R4804:Clk4	UTSW	11	51,172,150 (GRCm39)	missense	probably damaging	1.00
R5141:Clk4	UTSW	11	51,166,598 (GRCm39)	missense	possibly damaging	0.79
R5399:Clk4	UTSW	11	51,166,084 (GRCm39)	missense	probably damaging	1.00
R6182:Clk4	UTSW	11	51,159,009 (GRCm39)	missense	possibly damaging	0.66
R6274:Clk4	UTSW	11	51,162,748 (GRCm39)	missense	possibly damaging	0.69
R6480:Clk4	UTSW	11	51,161,373 (GRCm39)	nonsense	probably null
R6759:Clk4	UTSW	11	51,166,401 (GRCm39)	missense	possibly damaging	0.95
R6843:Clk4	UTSW	11	51,167,076 (GRCm39)	critical splice donor site	probably null
R7138:Clk4	UTSW	11	51,168,759 (GRCm39)	missense	probably damaging	1.00
R7186:Clk4	UTSW	11	51,159,607 (GRCm39)	missense	probably benign	0.00
R7235:Clk4	UTSW	11	51,167,012 (GRCm39)	missense	probably damaging	0.98
R7687:Clk4	UTSW	11	51,172,225 (GRCm39)	missense	probably benign	0.02
R7842:Clk4	UTSW	11	51,171,956 (GRCm39)	missense	probably benign	0.00
R8073:Clk4	UTSW	11	51,168,716 (GRCm39)	missense	probably benign	0.29
R8515:Clk4	UTSW	11	51,166,088 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TCTGGAACCTAATATTATGGGCTC -3'
(R):5'- TCTAGCATCTGGACGCATCG -3'

Sequencing Primer
(F):5'- CTGAGGTAGGACTTTCACAAGTTCAG -3'
(R):5'- CATCTGGACGCATCGGCTAAAAG -3'

Posted On

2020-10-20