Mutagenetix > Incidental Mutation

Incidental Mutation 'R8474:Gramd1b'

657174

Institutional Source

Beutler Lab

Gene Symbol

Gramd1b

Ensembl Gene

ENSMUSG00000040111

Gene Name

GRAM domain containing 1B

Synonyms

A930008A22Rik

MMRRC Submission

067918-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.146) question?

Stock #

R8474 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

40204529-40442679 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 40287207 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000148890 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045682] [ENSMUST00000118159] [ENSMUST00000119373] [ENSMUST00000165104] [ENSMUST00000211853] [ENSMUST00000216821]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000045682

SMART Domains

Protein: ENSMUSP00000048126
Gene: ENSMUSG00000040111

Domain	Start	End	E-Value	Type
low complexity region	31	49	N/A	INTRINSIC
low complexity region	104	117	N/A	INTRINSIC
low complexity region	123	141	N/A	INTRINSIC
low complexity region	203	226	N/A	INTRINSIC
GRAM	240	307	1.54e-28	SMART
low complexity region	375	385	N/A	INTRINSIC
Pfam:DUF4782	519	667	1.6e-38	PFAM
low complexity region	696	710	N/A	INTRINSIC
transmembrane domain	768	790	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000118159

SMART Domains

Protein: ENSMUSP00000112417
Gene: ENSMUSG00000040111

Domain	Start	End	E-Value	Type
low complexity region	19	42	N/A	INTRINSIC
GRAM	56	123	1.54e-28	SMART
low complexity region	191	201	N/A	INTRINSIC
low complexity region	512	526	N/A	INTRINSIC
transmembrane domain	584	606	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000119373

SMART Domains

Protein: ENSMUSP00000112489
Gene: ENSMUSG00000040111

Domain	Start	End	E-Value	Type
low complexity region	9	24	N/A	INTRINSIC
low complexity region	86	101	N/A	INTRINSIC
GRAM	126	193	1.54e-28	SMART
low complexity region	261	271	N/A	INTRINSIC
low complexity region	582	596	N/A	INTRINSIC
transmembrane domain	654	676	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000165104

SMART Domains

Protein: ENSMUSP00000130050
Gene: ENSMUSG00000040111

Domain	Start	End	E-Value	Type
low complexity region	31	49	N/A	INTRINSIC
low complexity region	104	117	N/A	INTRINSIC
low complexity region	123	141	N/A	INTRINSIC
low complexity region	203	226	N/A	INTRINSIC
GRAM	240	307	1.54e-28	SMART
low complexity region	375	385	N/A	INTRINSIC
low complexity region	696	710	N/A	INTRINSIC
transmembrane domain	768	790	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000211853

Predicted Effect

probably null
Transcript: ENSMUST00000216821

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy8	A	T	15: 64,576,638 (GRCm39)	S975T	probably damaging	Het
Adgrg1	C	G	8: 95,729,936 (GRCm39)	T46S	probably damaging	Het
Akip1	T	A	7: 109,306,697 (GRCm39)	D131E	probably benign	Het
Arhgef39	A	G	4: 43,498,015 (GRCm39)	V163A	probably benign	Het
Atg2a	T	C	19: 6,301,433 (GRCm39)		probably null	Het
Bcam	A	T	7: 19,494,325 (GRCm39)	L357*	probably null	Het
Bcat2	A	G	7: 45,237,075 (GRCm39)	N194S	probably damaging	Het
Bcl2l14	T	C	6: 134,400,720 (GRCm39)	L47P	probably benign	Het
Cbln1	C	T	8: 88,198,673 (GRCm39)	A66T	possibly damaging	Het
Ccdc191	G	T	16: 43,710,262 (GRCm39)		probably benign	Het
Cd70	C	T	17: 57,456,468 (GRCm39)	S45N	possibly damaging	Het
Cfap43	G	A	19: 47,886,363 (GRCm39)	A84V	probably benign	Het
Clca3a1	T	A	3: 144,710,792 (GRCm39)	N804Y	possibly damaging	Het
Cmah	A	T	13: 24,601,350 (GRCm39)	N52I	probably damaging	Het
Crot	A	G	5: 9,043,518 (GRCm39)	Y35H	probably damaging	Het
Cyp3a59	C	A	5: 146,041,487 (GRCm39)	P344T	probably benign	Het
Dnah5	A	G	15: 28,247,978 (GRCm39)	E705G	probably benign	Het
Dnm2	A	G	9: 21,377,016 (GRCm39)	Y125C	probably damaging	Het
Dst	A	G	1: 34,208,266 (GRCm39)	Y739C	probably damaging	Het
Eif3a	A	T	19: 60,767,929 (GRCm39)	M203K	possibly damaging	Het
Enpep	C	T	3: 129,113,076 (GRCm39)	V283M	probably damaging	Het
Ephx3	A	G	17: 32,407,219 (GRCm39)	S240P	probably damaging	Het
Evi5l	T	C	8: 4,260,784 (GRCm39)	H1011R	possibly damaging	Het
Fig4	A	T	10: 41,108,170 (GRCm39)	F677I	probably benign	Het
Gse1	C	T	8: 121,295,123 (GRCm39)		probably benign	Het
Hoxa9	A	G	6: 52,202,506 (GRCm39)		probably null	Het
Ice1	A	T	13: 70,752,566 (GRCm39)	S1173R	probably benign	Het
Ifi207	G	A	1: 173,556,605 (GRCm39)	T718I	possibly damaging	Het
Ifit1bl1	A	G	19: 34,572,262 (GRCm39)	L65P	probably damaging	Het
Impact	T	C	18: 13,107,798 (GRCm39)	I22T	probably damaging	Het
Lrp1	A	G	10: 127,375,572 (GRCm39)	C4409R	probably damaging	Het
Mark1	A	G	1: 184,651,783 (GRCm39)	W131R	probably damaging	Het
Mindy3	T	C	2: 12,404,839 (GRCm39)	T190A	probably damaging	Het
Mybbp1a	A	G	11: 72,338,563 (GRCm39)	D721G	probably benign	Het
Myo1d	A	G	11: 80,561,745 (GRCm39)	V466A	possibly damaging	Het
Myo5b	A	C	18: 74,903,411 (GRCm39)	D1809A	probably damaging	Het
Nudcd2	C	T	11: 40,624,850 (GRCm39)	Q20*	probably null	Het
Or4f62	T	C	2: 111,986,320 (GRCm39)	M8T	probably benign	Het
Or5b101	A	G	19: 13,005,357 (GRCm39)	L112P	probably damaging	Het
Or8g2b	T	A	9: 39,751,048 (GRCm39)	L106H	possibly damaging	Het
Pcif1	A	T	2: 164,730,272 (GRCm39)	D335V	probably damaging	Het
Pebp4	T	A	14: 70,085,136 (GRCm39)	C65S	possibly damaging	Het
Ptger1	C	T	8: 84,395,267 (GRCm39)	A248V	probably benign	Het
Qki	A	T	17: 10,537,747 (GRCm39)	M19K	probably benign	Het
Ralgapa2	C	G	2: 146,266,750 (GRCm39)	A609P	probably damaging	Het
Robo2	C	T	16: 73,745,150 (GRCm39)	G875D	probably damaging	Het
Runx2	A	G	17: 44,919,147 (GRCm39)	V375A	probably damaging	Het
Sis	A	T	3: 72,836,730 (GRCm39)	F841I	probably damaging	Het
Slc5a8	A	G	10: 88,757,552 (GRCm39)	D514G	possibly damaging	Het
Spag17	A	T	3: 99,934,586 (GRCm39)	T623S	probably benign	Het
Sppl2c	A	G	11: 104,078,963 (GRCm39)	S588G	probably benign	Het
Stxbp6	A	C	12: 44,949,704 (GRCm39)	V75G	possibly damaging	Het
Tmc3	G	A	7: 83,259,122 (GRCm39)	R531Q	probably damaging	Het
Tmem258	T	C	19: 10,184,550 (GRCm39)	Y41H	probably damaging	Het
Tsks	A	T	7: 44,600,263 (GRCm39)	T91S	probably damaging	Het
Vmn2r23	T	C	6: 123,681,599 (GRCm39)	V169A	probably benign	Het
Wdr54	T	C	6: 83,129,985 (GRCm39)	N282S	probably benign	Het
Yme1l1	T	A	2: 23,052,584 (GRCm39)	N79K	probably benign	Het

Other mutations in Gramd1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00490:Gramd1b	APN	9	40,221,337 (GRCm39)	missense	probably damaging	0.97
IGL00575:Gramd1b	APN	9	40,238,707 (GRCm39)	splice site	probably benign
IGL01596:Gramd1b	APN	9	40,214,809 (GRCm39)	missense	probably damaging	1.00
IGL01810:Gramd1b	APN	9	40,227,069 (GRCm39)	missense	probably damaging	1.00
IGL02148:Gramd1b	APN	9	40,227,060 (GRCm39)	missense	probably damaging	1.00
IGL02206:Gramd1b	APN	9	40,211,328 (GRCm39)	missense	probably benign	0.01
IGL02626:Gramd1b	APN	9	40,209,306 (GRCm39)	missense	probably damaging	0.98
IGL02723:Gramd1b	APN	9	40,218,127 (GRCm39)	missense	probably damaging	0.97
IGL03192:Gramd1b	APN	9	40,218,097 (GRCm39)	missense	probably damaging	1.00
I2288:Gramd1b	UTSW	9	40,218,101 (GRCm39)	missense	probably damaging	0.97
PIT4283001:Gramd1b	UTSW	9	40,366,752 (GRCm39)	missense	probably benign	0.01
R0038:Gramd1b	UTSW	9	40,228,822 (GRCm39)	missense	probably damaging	1.00
R0038:Gramd1b	UTSW	9	40,228,822 (GRCm39)	missense	probably damaging	1.00
R0600:Gramd1b	UTSW	9	40,219,651 (GRCm39)	missense	probably damaging	1.00
R1290:Gramd1b	UTSW	9	40,228,117 (GRCm39)	splice site	probably null
R1637:Gramd1b	UTSW	9	40,215,834 (GRCm39)	splice site	probably null
R1782:Gramd1b	UTSW	9	40,324,633 (GRCm39)	missense	probably damaging	1.00
R1928:Gramd1b	UTSW	9	40,217,765 (GRCm39)	missense	possibly damaging	0.70
R3620:Gramd1b	UTSW	9	40,366,842 (GRCm39)	missense	probably benign	0.01
R3943:Gramd1b	UTSW	9	40,442,340 (GRCm39)	start codon destroyed	probably null
R4613:Gramd1b	UTSW	9	40,219,289 (GRCm39)	missense	probably damaging	1.00
R4740:Gramd1b	UTSW	9	40,227,128 (GRCm39)	splice site	probably null
R4808:Gramd1b	UTSW	9	40,215,645 (GRCm39)	missense	possibly damaging	0.58
R5407:Gramd1b	UTSW	9	40,366,951 (GRCm39)	missense	probably damaging	0.97
R6209:Gramd1b	UTSW	9	40,244,946 (GRCm39)	missense	probably damaging	1.00
R6797:Gramd1b	UTSW	9	40,219,702 (GRCm39)	missense	probably benign	0.34
R7103:Gramd1b	UTSW	9	40,312,902 (GRCm39)	missense	unknown
R7185:Gramd1b	UTSW	9	40,244,859 (GRCm39)	missense	probably benign	0.03
R7352:Gramd1b	UTSW	9	40,219,289 (GRCm39)	missense	probably damaging	1.00
R7409:Gramd1b	UTSW	9	40,238,727 (GRCm39)	missense	probably damaging	1.00
R7561:Gramd1b	UTSW	9	40,312,911 (GRCm39)	missense	unknown
R8272:Gramd1b	UTSW	9	40,215,820 (GRCm39)	missense	probably benign	0.00
R8690:Gramd1b	UTSW	9	40,215,674 (GRCm39)	missense	probably damaging	1.00
R8818:Gramd1b	UTSW	9	40,215,780 (GRCm39)	missense	probably benign	0.01
R9493:Gramd1b	UTSW	9	40,217,689 (GRCm39)	missense	probably damaging	1.00
R9648:Gramd1b	UTSW	9	40,244,793 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TGGAGGCTCTTTTCAGCTTC -3'
(R):5'- TCATCAGAGACTGGCAGTGG -3'

Sequencing Primer
(F):5'- AGGCTCTTTTCAGCTTCTATGAG -3'
(R):5'- TGGATTTGCCCAAGCTGC -3'

Posted On

2021-01-18