Incidental Mutation 'R8493:Notch1'
ID 658095
Institutional Source Beutler Lab
Gene Symbol Notch1
Ensembl Gene ENSMUSG00000026923
Gene Name notch 1
Synonyms 9930111A19Rik, Motch A, Tan1, Mis6, lin-12, N1
MMRRC Submission 067935-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R8493 (G1)
Quality Score 225.009
Status Not validated
Chromosome 2
Chromosomal Location 26347914-26393834 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 26362251 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 27 (V27A)
Ref Sequence ENSEMBL: ENSMUSP00000115258 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028288] [ENSMUST00000132820]
AlphaFold Q01705
Predicted Effect silent
Transcript: ENSMUST00000028288
SMART Domains Protein: ENSMUSP00000028288
Gene: ENSMUSG00000026923

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
EGF 23 58 1.63e1 SMART
EGF 62 99 4.29e-5 SMART
EGF 105 139 6.25e-7 SMART
EGF_CA 140 176 1.02e-6 SMART
EGF_CA 178 216 4.21e-13 SMART
EGF 221 255 6.7e-7 SMART
EGF_CA 257 293 6.8e-8 SMART
EGF_CA 295 333 1.16e-10 SMART
EGF_CA 335 371 3.17e-8 SMART
EGF 375 410 5.32e-1 SMART
EGF_CA 412 450 4.59e-14 SMART
EGF_CA 452 488 1.02e-11 SMART
EGF_CA 490 526 4.81e-8 SMART
EGF_CA 528 564 3.19e-13 SMART
EGF_CA 566 601 1.91e-11 SMART
EGF_CA 603 639 1.78e-11 SMART
EGF_CA 641 676 9.62e-8 SMART
EGF_CA 678 714 2.38e-12 SMART
EGF_CA 716 751 5.23e-9 SMART
EGF_CA 753 789 6.25e-7 SMART
EGF_CA 791 827 1.1e-11 SMART
EGF 832 867 2.03e-6 SMART
EGF_CA 869 905 5.73e-15 SMART
EGF_CA 907 943 4.56e-9 SMART
EGF_CA 945 981 1.64e-10 SMART
EGF_CA 983 1019 5.83e-7 SMART
EGF_CA 1021 1057 1.05e-13 SMART
EGF 1062 1095 8.12e-6 SMART
EGF 1100 1143 5.66e-5 SMART
EGF_CA 1145 1181 1.1e-11 SMART
EGF_CA 1183 1219 3.87e-12 SMART
EGF_CA 1221 1265 2.89e-11 SMART
EGF_CA 1267 1305 1.2e-8 SMART
EGF 1310 1346 5.74e-6 SMART
EGF 1351 1384 4.1e-2 SMART
EGF 1390 1426 2.66e-1 SMART
NL 1442 1480 4.08e-16 SMART
NL 1483 1522 1.08e-15 SMART
NL 1523 1562 7.39e-14 SMART
NOD 1566 1622 1.81e-32 SMART
NODP 1660 1722 3.27e-30 SMART
low complexity region 1729 1746 N/A INTRINSIC
ANK 1870 1912 1.07e2 SMART
ANK 1917 1946 4.82e-3 SMART
ANK 1950 1980 6.71e-2 SMART
ANK 1984 2013 1.23e0 SMART
ANK 2017 2046 9.13e-4 SMART
ANK 2050 2079 2.97e-3 SMART
low complexity region 2205 2222 N/A INTRINSIC
low complexity region 2364 2395 N/A INTRINSIC
DUF3454 2453 2517 2.01e-30 SMART
Predicted Effect unknown
Transcript: ENSMUST00000132820
AA Change: V27A
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the NOTCH family of proteins. Members of this Type I transmembrane protein family share structural characteristics including an extracellular domain consisting of multiple epidermal growth factor-like (EGF) repeats, and an intracellular domain consisting of multiple different domain types. Notch signaling is an evolutionarily conserved intercellular signaling pathway that regulates interactions between physically adjacent cells through binding of Notch family receptors to their cognate ligands. The encoded preproprotein is proteolytically processed in the trans-Golgi network to generate two polypeptide chains that heterodimerize to form the mature cell-surface receptor. This receptor plays a role in the development of numerous cell and tissue types. Mutations in this gene are associated with aortic valve disease, Adams-Oliver syndrome, T-cell acute lymphoblastic leukemia, chronic lymphocytic leukemia, and head and neck squamous cell carcinoma. [provided by RefSeq, Jan 2016]
PHENOTYPE: Homozygotes for null alleles exhibit defects in embryonic development resulting in lethality at some point in organogenesis. Lethal phenotype may be affected by genetic background. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 78 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930562C15Rik A T 16: 4,653,453 (GRCm39) M1L unknown Het
Abca13 T A 11: 9,460,668 (GRCm39) I4226N probably damaging Het
Ankrd10 C A 8: 11,678,518 (GRCm39) E125* probably null Het
Apob A T 12: 8,059,009 (GRCm39) D2497V possibly damaging Het
Arap1 G A 7: 101,035,725 (GRCm39) W87* probably null Het
Arhgef37 C T 18: 61,640,277 (GRCm39) V261I probably benign Het
Arl4a A C 12: 40,086,472 (GRCm39) C92G probably benign Het
Arrdc2 C T 8: 71,289,501 (GRCm39) probably null Het
Atg16l1 A C 1: 87,706,704 (GRCm39) T355P probably damaging Het
Card14 T G 11: 119,224,435 (GRCm39) probably null Het
Cd109 G A 9: 78,564,801 (GRCm39) V249I probably benign Het
Cdhr4 A G 9: 107,873,453 (GRCm39) D395G probably damaging Het
Celsr1 C A 15: 85,822,207 (GRCm39) M1703I possibly damaging Het
Cfap157 A G 2: 32,669,752 (GRCm39) I277T probably benign Het
Chst4 A G 8: 110,757,095 (GRCm39) V173A probably damaging Het
Clca4b T C 3: 144,617,911 (GRCm39) N731D probably benign Het
Col11a2 A G 17: 34,278,936 (GRCm39) E1122G possibly damaging Het
Csf1r C G 18: 61,247,954 (GRCm39) P341A probably damaging Het
Dclk3 A G 9: 111,297,215 (GRCm39) E253G probably benign Het
Dnah2 T A 11: 69,343,804 (GRCm39) D2829V probably damaging Het
Dnah7a T C 1: 53,512,067 (GRCm39) N2998S probably damaging Het
Ehbp1 C T 11: 22,235,842 (GRCm39) probably benign Het
Eprs1 A T 1: 185,139,371 (GRCm39) K919* probably null Het
Esp16 A T 17: 39,850,821 (GRCm39) K67* probably null Het
Fam169a G T 13: 97,259,367 (GRCm39) E474D probably benign Het
Fam83h C T 15: 75,874,502 (GRCm39) R945H probably benign Het
Flnb T A 14: 7,869,822 (GRCm38) V195E probably damaging Het
Gm3159 T C 14: 4,398,567 (GRCm38) I86T probably damaging Het
Gm4744 G A 6: 40,926,281 (GRCm39) S103F Het
Gvin2 A G 7: 105,548,088 (GRCm39) S1655P probably benign Het
Ift122 T A 6: 115,887,292 (GRCm39) I713N probably benign Het
Ilkap A G 1: 91,306,266 (GRCm39) I105T probably damaging Het
Isl1 G T 13: 116,441,835 (GRCm39) H133N possibly damaging Het
Jade1 T A 3: 41,559,113 (GRCm39) L398Q possibly damaging Het
Kcnh7 C T 2: 62,681,003 (GRCm39) V195M probably benign Het
Kif3a A T 11: 53,489,627 (GRCm39) K669* probably null Het
L3mbtl4 G A 17: 68,937,239 (GRCm39) R420H probably damaging Het
Mrgprb1 A T 7: 48,097,321 (GRCm39) I197N probably damaging Het
Mthfd1 A G 12: 76,340,929 (GRCm39) T263A probably damaging Het
Mtmr7 G A 8: 41,059,927 (GRCm39) A62V possibly damaging Het
Naxe A G 3: 87,965,757 (GRCm39) probably benign Het
Ndufs2 T C 1: 171,068,677 (GRCm39) T51A probably benign Het
Nlrc5 T A 8: 95,249,848 (GRCm39) L1824Q probably damaging Het
Nucks1 A T 1: 131,857,473 (GRCm39) M169L probably benign Het
Or10ag53 T A 2: 87,083,215 (GRCm39) D311E probably benign Het
Or13p4 C T 4: 118,547,229 (GRCm39) S140N probably benign Het
Or4a80 T A 2: 89,582,599 (GRCm39) Y191F probably benign Het
Or4k45 T A 2: 111,395,324 (GRCm39) H155L probably damaging Het
Or51aa2 A T 7: 103,187,479 (GRCm39) S321T probably benign Het
Or52n20 G T 7: 104,320,022 (GRCm39) V38L probably benign Het
Or5w10 T A 2: 87,375,114 (GRCm39) Y258F probably damaging Het
Pcnt C T 10: 76,239,457 (GRCm39) probably null Het
Pdcd7 T C 9: 65,254,039 (GRCm39) S206P probably benign Het
Pdia4 A T 6: 47,773,575 (GRCm39) Y591* probably null Het
Pgap6 G T 17: 26,340,931 (GRCm39) R678L probably damaging Het
Plxna4 C T 6: 32,192,647 (GRCm39) M771I probably benign Het
Pramel47 C T 5: 95,488,092 (GRCm39) H9Y possibly damaging Het
Ptpn13 A G 5: 103,712,031 (GRCm39) Y1643C probably damaging Het
Ptpn13 A G 5: 103,717,671 (GRCm39) I1906V probably benign Het
Rab33b T A 3: 51,391,795 (GRCm39) S15T probably benign Het
Rasip1 A T 7: 45,284,467 (GRCm39) M644L possibly damaging Het
Rnf4 G A 5: 34,506,035 (GRCm39) C55Y probably damaging Het
Sel1l A T 12: 91,780,735 (GRCm39) Y585* probably null Het
Slc40a1 A T 1: 45,950,576 (GRCm39) F292Y probably damaging Het
Smarca4 G A 9: 21,570,144 (GRCm39) D716N probably damaging Het
Sp7 T A 15: 102,266,837 (GRCm39) H323L possibly damaging Het
Speer1m T C 5: 11,971,489 (GRCm39) L147P probably damaging Het
Sprtn A G 8: 125,629,933 (GRCm39) S409G probably benign Het
St3gal2 T G 8: 111,688,853 (GRCm39) L131R probably damaging Het
Tctn1 A G 5: 122,399,552 (GRCm39) C91R probably damaging Het
Tgm1 A T 14: 55,937,754 (GRCm39) V785E probably damaging Het
Topaz1 G T 9: 122,579,573 (GRCm39) V828L probably benign Het
Triobp C T 15: 78,878,326 (GRCm39) H1750Y possibly damaging Het
Ttc27 G A 17: 75,050,047 (GRCm39) probably null Het
Usp2 G A 9: 43,987,350 (GRCm39) G216D possibly damaging Het
Vmn2r99 A G 17: 19,614,020 (GRCm39) D580G probably benign Het
Wbp1l G A 19: 46,640,988 (GRCm39) R106H possibly damaging Het
Zmym2 G T 14: 57,151,606 (GRCm39) C497F probably damaging Het
Other mutations in Notch1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00164:Notch1 APN 2 26,350,058 (GRCm39) missense probably damaging 0.98
IGL01343:Notch1 APN 2 26,362,917 (GRCm39) missense probably benign 0.25
IGL02066:Notch1 APN 2 26,350,408 (GRCm39) missense possibly damaging 0.71
IGL02158:Notch1 APN 2 26,350,351 (GRCm39) missense probably damaging 1.00
IGL02541:Notch1 APN 2 26,358,515 (GRCm39) missense probably benign 0.12
IGL03280:Notch1 APN 2 26,367,886 (GRCm39) intron probably benign
IGL03338:Notch1 APN 2 26,349,971 (GRCm39) missense probably benign
Antero UTSW 2 26,366,126 (GRCm39) missense possibly damaging 0.96
march UTSW 2 26,359,911 (GRCm39) missense probably damaging 0.98
PIT4494001:Notch1 UTSW 2 26,356,485 (GRCm39) missense probably damaging 1.00
R0013:Notch1 UTSW 2 26,363,830 (GRCm39) missense possibly damaging 0.64
R0025:Notch1 UTSW 2 26,360,943 (GRCm39) missense probably damaging 1.00
R0129:Notch1 UTSW 2 26,350,470 (GRCm39) missense probably benign 0.06
R0285:Notch1 UTSW 2 26,350,873 (GRCm39) missense possibly damaging 0.88
R0531:Notch1 UTSW 2 26,356,584 (GRCm39) missense probably benign 0.00
R0747:Notch1 UTSW 2 26,362,152 (GRCm39) missense unknown
R1440:Notch1 UTSW 2 26,370,976 (GRCm39) intron probably benign
R1502:Notch1 UTSW 2 26,374,335 (GRCm39) missense possibly damaging 0.95
R1539:Notch1 UTSW 2 26,362,125 (GRCm39) nonsense probably null
R1623:Notch1 UTSW 2 26,368,624 (GRCm39) missense possibly damaging 0.88
R1844:Notch1 UTSW 2 26,350,446 (GRCm39) missense probably benign 0.12
R1863:Notch1 UTSW 2 26,359,962 (GRCm39) missense probably damaging 1.00
R1874:Notch1 UTSW 2 26,371,591 (GRCm39) missense possibly damaging 0.89
R1926:Notch1 UTSW 2 26,371,669 (GRCm39) missense probably damaging 1.00
R2156:Notch1 UTSW 2 26,350,873 (GRCm39) missense possibly damaging 0.91
R2196:Notch1 UTSW 2 26,353,816 (GRCm39) nonsense probably null
R2209:Notch1 UTSW 2 26,350,019 (GRCm39) missense probably benign
R2382:Notch1 UTSW 2 26,363,793 (GRCm39) missense probably benign 0.40
R2508:Notch1 UTSW 2 26,355,485 (GRCm39) missense possibly damaging 0.80
R2873:Notch1 UTSW 2 26,350,247 (GRCm39) missense possibly damaging 0.89
R2874:Notch1 UTSW 2 26,350,247 (GRCm39) missense possibly damaging 0.89
R3798:Notch1 UTSW 2 26,368,630 (GRCm39) missense probably benign 0.00
R4019:Notch1 UTSW 2 26,371,154 (GRCm39) missense probably benign 0.03
R4305:Notch1 UTSW 2 26,367,936 (GRCm39) missense probably damaging 1.00
R4334:Notch1 UTSW 2 26,350,048 (GRCm39) missense probably benign 0.22
R4504:Notch1 UTSW 2 26,362,189 (GRCm39) missense probably benign 0.16
R4624:Notch1 UTSW 2 26,368,093 (GRCm39) missense possibly damaging 0.94
R4659:Notch1 UTSW 2 26,360,901 (GRCm39) missense probably damaging 0.99
R4703:Notch1 UTSW 2 26,361,170 (GRCm39) missense probably benign
R4869:Notch1 UTSW 2 26,361,191 (GRCm39) missense probably benign 0.21
R4938:Notch1 UTSW 2 26,364,136 (GRCm39) nonsense probably null
R4989:Notch1 UTSW 2 26,371,193 (GRCm39) missense probably damaging 1.00
R5010:Notch1 UTSW 2 26,366,126 (GRCm39) missense possibly damaging 0.96
R5283:Notch1 UTSW 2 26,358,638 (GRCm39) missense probably damaging 1.00
R5303:Notch1 UTSW 2 26,368,631 (GRCm39) missense probably benign 0.01
R5635:Notch1 UTSW 2 26,366,173 (GRCm39) missense probably damaging 1.00
R5755:Notch1 UTSW 2 26,363,704 (GRCm39) missense probably benign 0.12
R5926:Notch1 UTSW 2 26,366,116 (GRCm39) missense probably benign 0.35
R5947:Notch1 UTSW 2 26,352,540 (GRCm39) intron probably benign
R6053:Notch1 UTSW 2 26,362,924 (GRCm39) missense probably benign 0.06
R6161:Notch1 UTSW 2 26,358,743 (GRCm39) missense probably damaging 1.00
R6162:Notch1 UTSW 2 26,352,207 (GRCm39) missense probably benign
R6174:Notch1 UTSW 2 26,375,454 (GRCm39) missense possibly damaging 0.50
R6199:Notch1 UTSW 2 26,359,911 (GRCm39) missense probably damaging 0.98
R6209:Notch1 UTSW 2 26,362,817 (GRCm39) missense probably damaging 1.00
R6251:Notch1 UTSW 2 26,364,182 (GRCm39) missense possibly damaging 0.64
R6493:Notch1 UTSW 2 26,362,110 (GRCm39) missense unknown
R6723:Notch1 UTSW 2 26,368,118 (GRCm39) missense probably damaging 1.00
R6736:Notch1 UTSW 2 26,350,298 (GRCm39) missense probably benign 0.01
R7020:Notch1 UTSW 2 26,371,586 (GRCm39) missense possibly damaging 0.95
R7058:Notch1 UTSW 2 26,353,830 (GRCm39) missense probably benign 0.05
R7154:Notch1 UTSW 2 26,349,950 (GRCm39) missense probably benign
R7291:Notch1 UTSW 2 26,366,387 (GRCm39) missense probably benign 0.01
R7379:Notch1 UTSW 2 26,369,479 (GRCm39) missense probably damaging 1.00
R7560:Notch1 UTSW 2 26,350,177 (GRCm39) missense probably benign 0.43
R7610:Notch1 UTSW 2 26,368,191 (GRCm39) missense probably benign 0.13
R7833:Notch1 UTSW 2 26,349,545 (GRCm39) makesense probably null
R7988:Notch1 UTSW 2 26,361,013 (GRCm39) missense probably benign 0.00
R8514:Notch1 UTSW 2 26,362,181 (GRCm39) missense probably damaging 1.00
R8523:Notch1 UTSW 2 26,354,917 (GRCm39) missense possibly damaging 0.82
R8677:Notch1 UTSW 2 26,359,936 (GRCm39) missense probably damaging 1.00
R8696:Notch1 UTSW 2 26,368,004 (GRCm39) critical splice acceptor site probably benign
R8833:Notch1 UTSW 2 26,371,615 (GRCm39) missense probably damaging 1.00
R8964:Notch1 UTSW 2 26,371,062 (GRCm39) missense possibly damaging 0.65
R9091:Notch1 UTSW 2 26,369,895 (GRCm39) missense probably damaging 0.99
R9144:Notch1 UTSW 2 26,349,587 (GRCm39) missense probably benign 0.00
R9145:Notch1 UTSW 2 26,349,587 (GRCm39) missense probably benign 0.00
R9151:Notch1 UTSW 2 26,367,939 (GRCm39) missense probably benign 0.01
R9270:Notch1 UTSW 2 26,369,895 (GRCm39) missense probably damaging 0.99
R9463:Notch1 UTSW 2 26,359,845 (GRCm39) missense probably benign 0.20
R9546:Notch1 UTSW 2 26,371,127 (GRCm39) missense probably damaging 0.97
R9674:Notch1 UTSW 2 26,361,308 (GRCm39) missense probably damaging 0.98
X0018:Notch1 UTSW 2 26,352,239 (GRCm39) nonsense probably null
X0066:Notch1 UTSW 2 26,360,347 (GRCm39) missense possibly damaging 0.90
Z1088:Notch1 UTSW 2 26,367,127 (GRCm39) missense probably damaging 0.99
Z1177:Notch1 UTSW 2 26,350,321 (GRCm39) missense possibly damaging 0.74
Predicted Primers PCR Primer
(F):5'- ACCAATGATGACACCAGGG -3'
(R):5'- CAACCACCACGTGTCTATATGC -3'

Sequencing Primer
(F):5'- ATGATGACACCAGGGAGCCTC -3'
(R):5'- GCTATAAAATCTCTGCTCGTGATTTG -3'
Posted On 2021-01-18