Incidental Mutation 'R8551:Slc7a5'
| ID |
659867 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Slc7a5
|
| Ensembl Gene |
ENSMUSG00000040010 |
| Gene Name |
solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 |
| Synonyms |
D0H16S474E, Gm42049, TA1, LAT1 |
| MMRRC Submission |
068516-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R8551 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
8 |
| Chromosomal Location |
122607885-122634425 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 122613050 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Proline
at position 343
(S343P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000041557
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000045557]
[ENSMUST00000127664]
|
| AlphaFold |
Q9Z127 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000045557
AA Change: S343P
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000041557
Gene: ENSMUSG00000040010
AA Change: S343P
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
27 |
N/A |
INTRINSIC |
|
Pfam:AA_permease_2
|
51 |
481 |
4.2e-65 |
PFAM |
|
Pfam:AA_permease
|
56 |
489 |
1.6e-29 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000127664
|
| SMART Domains |
Protein: ENSMUSP00000118564
Gene: ENSMUSG00000092329
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Glycos_transf_2
|
104 |
287 |
7.4e-31 |
PFAM |
|
Pfam:Glyco_transf_7C
|
261 |
331 |
4.9e-8 |
PFAM |
|
RICIN
|
406 |
531 |
9.28e-27 |
SMART |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 98.9%
|
| Validation Efficiency |
98% (39/40) |
| MGI Phenotype |
PHENOTYPE: Mice homozygous for a targeted mutation die prenatally. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 41 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamtsl3 |
G |
A |
7: 82,189,678 (GRCm39) |
R634H |
probably benign |
Het |
| Birc6 |
T |
G |
17: 74,864,949 (GRCm39) |
S236R |
probably benign |
Het |
| Dnah12 |
T |
A |
14: 26,496,227 (GRCm39) |
I1493K |
probably damaging |
Het |
| Dnah7b |
T |
C |
1: 46,155,360 (GRCm39) |
S303P |
possibly damaging |
Het |
| Eri2 |
A |
T |
7: 119,387,062 (GRCm39) |
|
probably null |
Het |
| Erlec1 |
C |
A |
11: 30,881,829 (GRCm39) |
C467F |
probably damaging |
Het |
| Exph5 |
A |
G |
9: 53,285,351 (GRCm39) |
T811A |
possibly damaging |
Het |
| Galr1 |
T |
A |
18: 82,424,191 (GRCm39) |
I29F |
probably benign |
Het |
| Gata3 |
C |
A |
2: 9,867,994 (GRCm39) |
C320F |
probably damaging |
Het |
| Ggnbp2 |
A |
T |
11: 84,732,351 (GRCm39) |
Y247* |
probably null |
Het |
| Gnao1 |
A |
G |
8: 94,682,735 (GRCm39) |
Q307R |
probably damaging |
Het |
| Hbp1 |
T |
C |
12: 31,980,709 (GRCm39) |
T465A |
probably damaging |
Het |
| Liph |
C |
G |
16: 21,800,158 (GRCm39) |
G152R |
probably damaging |
Het |
| Lrguk |
T |
C |
6: 34,093,446 (GRCm39) |
S656P |
probably damaging |
Het |
| Lyrm4 |
T |
A |
13: 36,163,844 (GRCm39) |
N85I |
probably benign |
Het |
| Lyst |
T |
A |
13: 13,808,645 (GRCm39) |
I105N |
possibly damaging |
Het |
| Maml3 |
T |
C |
3: 51,764,488 (GRCm39) |
T159A |
probably benign |
Het |
| Man1c1 |
A |
T |
4: 134,430,326 (GRCm39) |
L152* |
probably null |
Het |
| Map3k20 |
T |
G |
2: 72,232,704 (GRCm39) |
|
probably benign |
Het |
| Mthfsl |
G |
T |
9: 88,570,943 (GRCm39) |
R102S |
possibly damaging |
Het |
| Myo3a |
T |
A |
2: 22,337,277 (GRCm39) |
S391R |
probably benign |
Het |
| Naa50 |
A |
G |
16: 43,979,996 (GRCm39) |
D128G |
probably benign |
Het |
| Nlrp14 |
C |
T |
7: 106,782,359 (GRCm39) |
R519C |
possibly damaging |
Het |
| Or5b119 |
A |
G |
19: 13,457,109 (GRCm39) |
I151T |
possibly damaging |
Het |
| Or6d14 |
G |
T |
6: 116,534,289 (GRCm39) |
R301L |
probably damaging |
Het |
| Oxtr |
T |
C |
6: 112,465,939 (GRCm39) |
K274E |
probably damaging |
Het |
| Prkn |
A |
G |
17: 11,286,103 (GRCm39) |
K32R |
probably damaging |
Het |
| Relt |
T |
C |
7: 100,512,409 (GRCm39) |
|
probably benign |
Het |
| Rftn1 |
G |
T |
17: 50,354,408 (GRCm39) |
A318D |
probably damaging |
Het |
| Ryr2 |
T |
A |
13: 11,575,479 (GRCm39) |
I4840F |
possibly damaging |
Het |
| Sccpdh |
T |
A |
1: 179,509,013 (GRCm39) |
Y27N |
probably damaging |
Het |
| Snrnp200 |
A |
G |
2: 127,068,971 (GRCm39) |
D950G |
probably benign |
Het |
| Stk38 |
A |
G |
17: 29,207,199 (GRCm39) |
Y115H |
probably damaging |
Het |
| Tas2r116 |
T |
C |
6: 132,832,993 (GRCm39) |
V198A |
probably benign |
Het |
| Tfap2d |
A |
G |
1: 19,175,024 (GRCm39) |
D159G |
probably benign |
Het |
| Trim69 |
A |
G |
2: 122,003,810 (GRCm39) |
D253G |
probably benign |
Het |
| Trpv4 |
A |
T |
5: 114,768,900 (GRCm39) |
F359I |
possibly damaging |
Het |
| Twist1 |
C |
T |
12: 34,008,103 (GRCm39) |
R43W |
unknown |
Het |
| Usp19 |
A |
T |
9: 108,376,496 (GRCm39) |
E1026V |
possibly damaging |
Het |
| Virma |
A |
G |
4: 11,513,397 (GRCm39) |
Y417C |
probably damaging |
Het |
| Zfp735 |
A |
G |
11: 73,603,122 (GRCm39) |
I689V |
probably benign |
Het |
|
| Other mutations in Slc7a5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02192:Slc7a5
|
APN |
8 |
122,613,129 (GRCm39) |
intron |
probably benign |
|
|
R0364:Slc7a5
|
UTSW |
8 |
122,611,754 (GRCm39) |
missense |
probably benign |
|
|
R0580:Slc7a5
|
UTSW |
8 |
122,611,855 (GRCm39) |
missense |
probably benign |
0.21 |
|
R0965:Slc7a5
|
UTSW |
8 |
122,633,840 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1274:Slc7a5
|
UTSW |
8 |
122,610,453 (GRCm39) |
missense |
probably benign |
0.44 |
|
R2135:Slc7a5
|
UTSW |
8 |
122,610,444 (GRCm39) |
missense |
probably null |
0.96 |
|
R4163:Slc7a5
|
UTSW |
8 |
122,615,139 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4506:Slc7a5
|
UTSW |
8 |
122,614,234 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4910:Slc7a5
|
UTSW |
8 |
122,611,861 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R5243:Slc7a5
|
UTSW |
8 |
122,623,274 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5449:Slc7a5
|
UTSW |
8 |
122,613,087 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5719:Slc7a5
|
UTSW |
8 |
122,610,381 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5744:Slc7a5
|
UTSW |
8 |
122,615,121 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7473:Slc7a5
|
UTSW |
8 |
122,615,162 (GRCm39) |
missense |
probably benign |
|
|
R7499:Slc7a5
|
UTSW |
8 |
122,610,461 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7663:Slc7a5
|
UTSW |
8 |
122,614,274 (GRCm39) |
nonsense |
probably null |
|
|
R7680:Slc7a5
|
UTSW |
8 |
122,634,006 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7682:Slc7a5
|
UTSW |
8 |
122,633,879 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8382:Slc7a5
|
UTSW |
8 |
122,612,691 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8405:Slc7a5
|
UTSW |
8 |
122,613,661 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R9513:Slc7a5
|
UTSW |
8 |
122,613,616 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9727:Slc7a5
|
UTSW |
8 |
122,613,085 (GRCm39) |
missense |
probably benign |
0.35 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGGAGGGTTGTCAGCTATAC -3'
(R):5'- GGTTAAGGGCTGAGTCATGGAC -3'
Sequencing Primer
(F):5'- AGCTATACTGGGAGGGGCCTG -3'
(R):5'- AGTCATGGACTAAGCTGCTC -3'
|
| Posted On |
2021-01-18 |
Incidental Mutation