Incidental Mutation 'R8557:Hdlbp'
| ID |
660134 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Hdlbp
|
| Ensembl Gene |
ENSMUSG00000034088 |
| Gene Name |
high density lipoprotein (HDL) binding protein |
| Synonyms |
1110005P14Rik, D1Ertd101e |
| MMRRC Submission |
068520-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.915)
|
| Stock # |
R8557 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
1 |
| Chromosomal Location |
93333662-93406537 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 93341219 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamic Acid to Aspartic acid
at position 977
(E977D)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000139671
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000042498]
[ENSMUST00000170883]
[ENSMUST00000186164]
|
| AlphaFold |
Q8VDJ3 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000042498
AA Change: E1046D
PolyPhen 2
Score 0.826 (Sensitivity: 0.84; Specificity: 0.93)
|
| SMART Domains |
Protein: ENSMUSP00000043047
Gene: ENSMUSG00000034088
AA Change: E1046D
| Domain | Start | End | E-Value | Type |
|---|
|
KH
|
149 |
217 |
1.97e-15 |
SMART |
|
KH
|
221 |
289 |
1.8e-9 |
SMART |
|
KH
|
294 |
362 |
1.73e-11 |
SMART |
|
KH
|
363 |
429 |
2.66e-12 |
SMART |
|
KH
|
434 |
502 |
9.18e-16 |
SMART |
|
KH
|
506 |
575 |
7.52e-12 |
SMART |
|
KH
|
580 |
648 |
7.68e-18 |
SMART |
|
KH
|
652 |
721 |
3.24e-16 |
SMART |
|
KH
|
726 |
795 |
1.33e-12 |
SMART |
|
KH
|
799 |
868 |
2.48e-12 |
SMART |
|
KH
|
872 |
972 |
3.03e-16 |
SMART |
|
KH
|
973 |
1039 |
4.56e-11 |
SMART |
|
KH
|
1051 |
1122 |
3.67e-15 |
SMART |
|
KH
|
1126 |
1195 |
3.37e-14 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000170883
AA Change: E1046D
PolyPhen 2
Score 0.826 (Sensitivity: 0.84; Specificity: 0.93)
|
| SMART Domains |
Protein: ENSMUSP00000127903
Gene: ENSMUSG00000034088
AA Change: E1046D
| Domain | Start | End | E-Value | Type |
|---|
|
KH
|
149 |
217 |
1.97e-15 |
SMART |
|
KH
|
221 |
289 |
1.8e-9 |
SMART |
|
KH
|
294 |
362 |
1.73e-11 |
SMART |
|
KH
|
363 |
429 |
2.66e-12 |
SMART |
|
KH
|
434 |
502 |
9.18e-16 |
SMART |
|
KH
|
506 |
575 |
7.52e-12 |
SMART |
|
KH
|
580 |
648 |
7.68e-18 |
SMART |
|
KH
|
652 |
721 |
3.24e-16 |
SMART |
|
KH
|
726 |
795 |
1.33e-12 |
SMART |
|
KH
|
799 |
868 |
2.48e-12 |
SMART |
|
KH
|
872 |
972 |
3.03e-16 |
SMART |
|
KH
|
973 |
1039 |
4.56e-11 |
SMART |
|
KH
|
1051 |
1122 |
3.67e-15 |
SMART |
|
KH
|
1126 |
1195 |
3.37e-14 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000186164
AA Change: E977D
PolyPhen 2
Score 0.960 (Sensitivity: 0.78; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000139671
Gene: ENSMUSG00000034088
AA Change: E977D
| Domain | Start | End | E-Value | Type |
|---|
|
KH
|
149 |
217 |
1.2e-17 |
SMART |
|
KH
|
221 |
289 |
1.1e-11 |
SMART |
|
KH
|
294 |
360 |
1.6e-14 |
SMART |
|
KH
|
365 |
433 |
5.7e-18 |
SMART |
|
KH
|
437 |
506 |
4.6e-14 |
SMART |
|
KH
|
511 |
579 |
4.7e-20 |
SMART |
|
KH
|
583 |
652 |
2e-18 |
SMART |
|
KH
|
657 |
726 |
7.9e-15 |
SMART |
|
KH
|
730 |
799 |
1.5e-14 |
SMART |
|
KH
|
803 |
903 |
1.8e-18 |
SMART |
|
KH
|
904 |
970 |
2.8e-13 |
SMART |
|
KH
|
982 |
1053 |
2.2e-17 |
SMART |
|
KH
|
1057 |
1126 |
2e-16 |
SMART |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.8%
- 20x: 99.3%
|
| Validation Efficiency |
100% (60/60) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene binds high density lipoprotein (HDL) and may function to regulate excess cholesterol levels in cells. The encoded protein also binds RNA and can induce heterochromatin formation. [provided by RefSeq, Mar 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 61 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 0610040J01Rik |
T |
C |
5: 64,055,954 (GRCm39) |
V230A |
probably benign |
Het |
| Ablim2 |
A |
T |
5: 35,985,483 (GRCm39) |
H260L |
probably damaging |
Het |
| Acp4 |
C |
T |
7: 43,905,272 (GRCm39) |
|
probably null |
Het |
| Acvr2b |
G |
T |
9: 119,261,654 (GRCm39) |
V416L |
probably damaging |
Het |
| Adipoq |
A |
T |
16: 22,965,430 (GRCm39) |
|
probably benign |
Het |
| Amhr2 |
A |
G |
15: 102,362,847 (GRCm39) |
Q538R |
probably benign |
Het |
| Apoh |
C |
T |
11: 108,300,062 (GRCm39) |
T237I |
probably damaging |
Het |
| Aspm |
C |
T |
1: 139,384,494 (GRCm39) |
T97I |
probably benign |
Het |
| Atg16l2 |
A |
T |
7: 100,939,863 (GRCm39) |
H499Q |
probably benign |
Het |
| Bicdl2 |
G |
A |
17: 23,886,536 (GRCm39) |
R375H |
probably benign |
Het |
| C3 |
T |
C |
17: 57,531,383 (GRCm39) |
T304A |
probably benign |
Het |
| Cast |
A |
T |
13: 74,852,301 (GRCm39) |
D647E |
probably damaging |
Het |
| Chrm2 |
T |
C |
6: 36,501,010 (GRCm39) |
V289A |
probably benign |
Het |
| Clock |
T |
C |
5: 76,377,217 (GRCm39) |
D694G |
probably damaging |
Het |
| Cyp4a31 |
C |
T |
4: 115,427,438 (GRCm39) |
R215C |
possibly damaging |
Het |
| Dctn2 |
T |
C |
10: 127,114,062 (GRCm39) |
L334P |
probably damaging |
Het |
| Dnah11 |
A |
G |
12: 117,842,247 (GRCm39) |
I4444T |
probably benign |
Het |
| Egf |
C |
A |
3: 129,548,600 (GRCm39) |
R5L |
unknown |
Het |
| Ercc1 |
A |
G |
7: 19,082,480 (GRCm39) |
N11S |
probably benign |
Het |
| Eri3 |
T |
C |
4: 117,472,520 (GRCm39) |
S113P |
possibly damaging |
Het |
| Fasn |
A |
G |
11: 120,706,610 (GRCm39) |
V958A |
probably benign |
Het |
| Fgf10 |
A |
G |
13: 118,918,132 (GRCm39) |
K140R |
probably benign |
Het |
| Gfra2 |
G |
A |
14: 71,214,737 (GRCm39) |
M163I |
probably benign |
Het |
| Gm14403 |
T |
C |
2: 177,201,354 (GRCm39) |
I191T |
probably damaging |
Het |
| Hectd4 |
A |
G |
5: 121,448,714 (GRCm39) |
N354S |
possibly damaging |
Het |
| Hpgds |
A |
T |
6: 65,096,999 (GRCm39) |
I170N |
probably benign |
Het |
| Limk2 |
A |
G |
11: 3,296,379 (GRCm39) |
V356A |
possibly damaging |
Het |
| Map4 |
A |
G |
9: 109,893,370 (GRCm39) |
|
probably null |
Het |
| Mettl13 |
C |
T |
1: 162,371,921 (GRCm39) |
G316D |
possibly damaging |
Het |
| Mia2 |
T |
A |
12: 59,148,274 (GRCm39) |
L45I |
probably damaging |
Het |
| Mier1 |
T |
A |
4: 102,996,543 (GRCm39) |
|
probably null |
Het |
| Mob3a |
G |
T |
10: 80,527,008 (GRCm39) |
R106S |
probably benign |
Het |
| Mug2 |
T |
A |
6: 122,040,660 (GRCm39) |
F737I |
probably damaging |
Het |
| Myo7a |
C |
T |
7: 97,703,081 (GRCm39) |
A2053T |
probably benign |
Het |
| Myrip |
A |
G |
9: 120,246,252 (GRCm39) |
S127G |
probably benign |
Het |
| Naaladl2 |
T |
A |
3: 24,262,528 (GRCm39) |
K395I |
probably benign |
Het |
| Nedd4l |
A |
T |
18: 65,336,986 (GRCm39) |
M678L |
probably benign |
Het |
| Nefh |
A |
T |
11: 4,891,233 (GRCm39) |
I462N |
probably damaging |
Het |
| Nfe2 |
A |
G |
15: 103,157,025 (GRCm39) |
M322T |
probably benign |
Het |
| Ogfr |
GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG |
GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG |
2: 180,237,059 (GRCm39) |
|
probably benign |
Het |
| Or2z2 |
T |
A |
11: 58,346,562 (GRCm39) |
D71V |
probably damaging |
Het |
| Or56b1 |
T |
A |
7: 104,285,103 (GRCm39) |
V74E |
possibly damaging |
Het |
| Pkdcc |
A |
G |
17: 83,528,495 (GRCm39) |
N288S |
probably benign |
Het |
| Sacs |
G |
A |
14: 61,444,725 (GRCm39) |
C2257Y |
probably damaging |
Het |
| Sec23a |
G |
T |
12: 59,052,056 (GRCm39) |
Q90K |
probably damaging |
Het |
| Shisal2a |
T |
A |
4: 108,225,085 (GRCm39) |
N159I |
probably benign |
Het |
| Slc30a6 |
A |
G |
17: 74,712,685 (GRCm39) |
T61A |
possibly damaging |
Het |
| Slc39a11 |
C |
A |
11: 113,141,385 (GRCm39) |
A234S |
probably damaging |
Het |
| Smg6 |
C |
A |
11: 75,047,064 (GRCm39) |
N1252K |
probably damaging |
Het |
| Spata2 |
A |
T |
2: 167,326,227 (GRCm39) |
D197E |
probably damaging |
Het |
| Spen |
C |
T |
4: 141,197,681 (GRCm39) |
A3396T |
probably benign |
Het |
| Spocd1 |
T |
C |
4: 129,842,761 (GRCm39) |
F59L |
probably damaging |
Het |
| Tectb |
T |
A |
19: 55,181,105 (GRCm39) |
|
probably benign |
Het |
| Tnnc1 |
G |
A |
14: 30,932,562 (GRCm39) |
V82I |
probably damaging |
Het |
| Traf7 |
A |
T |
17: 24,729,015 (GRCm39) |
V513D |
probably damaging |
Het |
| Tut4 |
T |
A |
4: 108,399,908 (GRCm39) |
|
probably null |
Het |
| Vmn2r111 |
A |
T |
17: 22,790,910 (GRCm39) |
Y129* |
probably null |
Het |
| Vrtn |
T |
A |
12: 84,696,690 (GRCm39) |
F480Y |
probably benign |
Het |
| Vwa8 |
A |
T |
14: 79,246,649 (GRCm39) |
I664F |
probably damaging |
Het |
| Vwde |
A |
T |
6: 13,193,136 (GRCm39) |
V401E |
probably damaging |
Het |
| Zfp655 |
A |
T |
5: 145,180,835 (GRCm39) |
N231I |
probably benign |
Het |
|
| Other mutations in Hdlbp |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01025:Hdlbp
|
APN |
1 |
93,357,891 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01321:Hdlbp
|
APN |
1 |
93,351,524 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01387:Hdlbp
|
APN |
1 |
93,341,310 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
IGL01443:Hdlbp
|
APN |
1 |
93,358,796 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01467:Hdlbp
|
APN |
1 |
93,345,420 (GRCm39) |
splice site |
probably benign |
|
|
IGL02223:Hdlbp
|
APN |
1 |
93,340,171 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02274:Hdlbp
|
APN |
1 |
93,336,229 (GRCm39) |
splice site |
probably null |
|
|
IGL02452:Hdlbp
|
APN |
1 |
93,345,233 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03079:Hdlbp
|
APN |
1 |
93,341,662 (GRCm39) |
splice site |
probably benign |
|
|
IGL03169:Hdlbp
|
APN |
1 |
93,344,309 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
IGL03229:Hdlbp
|
APN |
1 |
93,357,909 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0119:Hdlbp
|
UTSW |
1 |
93,349,059 (GRCm39) |
splice site |
probably benign |
|
|
R0432:Hdlbp
|
UTSW |
1 |
93,353,054 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0508:Hdlbp
|
UTSW |
1 |
93,342,533 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0530:Hdlbp
|
UTSW |
1 |
93,358,039 (GRCm39) |
unclassified |
probably benign |
|
|
R1276:Hdlbp
|
UTSW |
1 |
93,348,823 (GRCm39) |
missense |
probably benign |
0.12 |
|
R1302:Hdlbp
|
UTSW |
1 |
93,351,107 (GRCm39) |
splice site |
probably null |
|
|
R1331:Hdlbp
|
UTSW |
1 |
93,348,853 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1537:Hdlbp
|
UTSW |
1 |
93,345,096 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1623:Hdlbp
|
UTSW |
1 |
93,351,591 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1695:Hdlbp
|
UTSW |
1 |
93,364,922 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1897:Hdlbp
|
UTSW |
1 |
93,350,007 (GRCm39) |
intron |
probably benign |
|
|
R1900:Hdlbp
|
UTSW |
1 |
93,349,959 (GRCm39) |
intron |
probably benign |
|
|
R1984:Hdlbp
|
UTSW |
1 |
93,358,840 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1985:Hdlbp
|
UTSW |
1 |
93,358,840 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2066:Hdlbp
|
UTSW |
1 |
93,349,602 (GRCm39) |
intron |
probably benign |
|
|
R2277:Hdlbp
|
UTSW |
1 |
93,335,900 (GRCm39) |
nonsense |
probably null |
|
|
R2349:Hdlbp
|
UTSW |
1 |
93,349,956 (GRCm39) |
intron |
probably benign |
|
|
R3434:Hdlbp
|
UTSW |
1 |
93,355,883 (GRCm39) |
missense |
probably benign |
0.04 |
|
R3978:Hdlbp
|
UTSW |
1 |
93,349,073 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4645:Hdlbp
|
UTSW |
1 |
93,349,842 (GRCm39) |
intron |
probably benign |
|
|
R5196:Hdlbp
|
UTSW |
1 |
93,347,915 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5760:Hdlbp
|
UTSW |
1 |
93,368,499 (GRCm39) |
intron |
probably benign |
|
|
R6327:Hdlbp
|
UTSW |
1 |
93,357,186 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R6420:Hdlbp
|
UTSW |
1 |
93,358,726 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6428:Hdlbp
|
UTSW |
1 |
93,359,167 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R6468:Hdlbp
|
UTSW |
1 |
93,345,389 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R6488:Hdlbp
|
UTSW |
1 |
93,355,946 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6592:Hdlbp
|
UTSW |
1 |
93,340,083 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6920:Hdlbp
|
UTSW |
1 |
93,340,083 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7156:Hdlbp
|
UTSW |
1 |
93,341,637 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7391:Hdlbp
|
UTSW |
1 |
93,358,783 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R7457:Hdlbp
|
UTSW |
1 |
93,355,944 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7498:Hdlbp
|
UTSW |
1 |
93,341,337 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7554:Hdlbp
|
UTSW |
1 |
93,365,031 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7593:Hdlbp
|
UTSW |
1 |
93,358,005 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7672:Hdlbp
|
UTSW |
1 |
93,364,821 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R7801:Hdlbp
|
UTSW |
1 |
93,358,029 (GRCm39) |
splice site |
probably null |
|
|
R7904:Hdlbp
|
UTSW |
1 |
93,351,092 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8062:Hdlbp
|
UTSW |
1 |
93,366,064 (GRCm39) |
missense |
probably benign |
0.10 |
|
R8113:Hdlbp
|
UTSW |
1 |
93,344,917 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8690:Hdlbp
|
UTSW |
1 |
93,341,640 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R8850:Hdlbp
|
UTSW |
1 |
93,359,053 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9288:Hdlbp
|
UTSW |
1 |
93,336,773 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9615:Hdlbp
|
UTSW |
1 |
93,358,014 (GRCm39) |
missense |
probably benign |
0.06 |
|
RF020:Hdlbp
|
UTSW |
1 |
93,368,456 (GRCm39) |
missense |
probably benign |
|
|
Z1088:Hdlbp
|
UTSW |
1 |
93,359,076 (GRCm39) |
start gained |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- GACTGAGCTTTGCCTTGAGC -3'
(R):5'- TCAGCCCACATTGGTTCTG -3'
Sequencing Primer
(F):5'- TTGAGCTTCTCCACAGCAGG -3'
(R):5'- GGTCTCACTCAAATCCCCCATGG -3'
|
| Posted On |
2021-01-18 |
Incidental Mutation