Mutagenetix > Incidental Mutation

Incidental Mutation 'R8673:Chchd6'

661256

Institutional Source

Beutler Lab

Gene Symbol

Chchd6

Ensembl Gene

ENSMUSG00000030086

Gene Name

coiled-coil-helix-coiled-coil-helix domain containing 6

Synonyms

1700021B03Rik, Micos25, 0710001P09Rik

MMRRC Submission

068528-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.059) question?

Stock #

R8673 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

89360128-89572634 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 89546380 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Cysteine at position 109 (S109C)

Ref Sequence

ENSEMBL: ENSMUSP00000032172 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032172] [ENSMUST00000113550]

AlphaFold

Q91VN4

Predicted Effect

probably damaging
Transcript: ENSMUST00000032172
AA Change: S109C

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000032172
Gene: ENSMUSG00000030086
AA Change: S109C

Domain	Start	End	E-Value	Type
Pfam:DUF737	16	227	1.5e-55	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000113550
AA Change: S109C

PolyPhen 2 Score 0.955 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000109179
Gene: ENSMUSG00000030086
AA Change: S109C

Domain	Start	End	E-Value	Type
Pfam:DUF737	16	179	4.8e-47	PFAM
Pfam:DUF737	173	199	9.6e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000204654

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

98% (50/51)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700067P10Rik	G	T	17: 48,400,849 (GRCm39)	E45*	probably null	Het
Anxa9	C	T	3: 95,207,657 (GRCm39)	R250Q	probably benign	Het
Apaf1	A	G	10: 90,831,530 (GRCm39)	S1195P	probably damaging	Het
Baiap2l1	T	A	5: 144,212,852 (GRCm39)		probably benign	Het
Bpifb6	G	T	2: 153,747,212 (GRCm39)	C172F	probably damaging	Het
Ccdc9	A	T	7: 16,018,286 (GRCm39)	D7E	probably damaging	Het
Cdcp3	A	T	7: 130,844,846 (GRCm39)	I580F	probably damaging	Het
Cltc	G	A	11: 86,648,201 (GRCm39)		probably benign	Het
Col4a6	G	A	X: 140,017,173 (GRCm39)	P60L	probably damaging	Het
Cxxc1	C	T	18: 74,351,915 (GRCm39)	T264I	probably benign	Het
D5Ertd579e	A	G	5: 36,830,151 (GRCm39)	S58P	probably benign	Het
Dlgap1	T	A	17: 71,122,293 (GRCm39)	H907Q	probably damaging	Het
Dnah2	A	T	11: 69,405,523 (GRCm39)	M663K	probably benign	Het
Dock8	G	A	19: 25,160,867 (GRCm39)	M1791I	probably damaging	Het
Esd	T	C	14: 74,969,952 (GRCm39)	F8S	probably benign	Het
Etnk2	T	C	1: 133,302,300 (GRCm39)	Y273H	probably damaging	Het
Fry	C	A	5: 150,318,576 (GRCm39)	H935Q	possibly damaging	Het
Gabrr3	T	G	16: 59,235,633 (GRCm39)	M45R	possibly damaging	Het
Gata4	T	C	14: 63,478,258 (GRCm39)	T114A	probably benign	Het
Gcnt4	G	A	13: 97,082,997 (GRCm39)	D98N	probably benign	Het
Idh2	TCCCAGG	T	7: 79,748,079 (GRCm39)		probably benign	Het
Igkv1-99	C	T	6: 68,519,387 (GRCm39)	Q115*	probably null	Het
Irak3	G	T	10: 119,982,493 (GRCm39)	T323K	possibly damaging	Het
Lrp2	T	C	2: 69,302,804 (GRCm39)	D2975G	probably damaging	Het
Mybph	T	A	1: 134,126,142 (GRCm39)	W319R	probably damaging	Het
Nell1	A	G	7: 49,869,343 (GRCm39)	D206G	probably damaging	Het
Or10ag55-ps1	A	T	2: 87,114,658 (GRCm39)	D8V	probably benign	Het
Or4c105	T	C	2: 88,647,590 (GRCm39)	V25A	probably benign	Het
Or5b114-ps1	T	C	19: 13,352,581 (GRCm39)	I85T	probably benign	Het
Pex1	A	C	5: 3,685,886 (GRCm39)	D1209A	possibly damaging	Het
Phf10	T	C	17: 15,170,868 (GRCm39)	D355G	probably benign	Het
Psmd2	T	C	16: 20,475,638 (GRCm39)	S413P	probably damaging	Het
Ptgir	G	T	7: 16,641,287 (GRCm39)	C193F	probably damaging	Het
Rad21l	A	G	2: 151,502,718 (GRCm39)	I164T	possibly damaging	Het
Ralgapb	G	A	2: 158,292,133 (GRCm39)	R773H	probably damaging	Het
Rasgef1b	G	T	5: 99,370,844 (GRCm39)	N385K	probably damaging	Het
Shank3	C	T	15: 89,433,979 (GRCm39)	R1575C	probably damaging	Het
Slc7a2	G	T	8: 41,365,446 (GRCm39)		probably benign	Het
Spata1	T	A	3: 146,181,079 (GRCm39)	N293I	probably damaging	Het
Spen	C	T	4: 141,197,681 (GRCm39)	A3396T	probably benign	Het
Sphkap	T	C	1: 83,253,561 (GRCm39)	H1396R	probably benign	Het
Spire2	A	G	8: 124,086,867 (GRCm39)	E446G	probably damaging	Het
Tdpoz2	A	T	3: 93,558,918 (GRCm39)	C351*	probably null	Het
Thoc5	G	A	11: 4,876,061 (GRCm39)	V605I	possibly damaging	Het
Ttll2	C	T	17: 7,619,340 (GRCm39)	V196I	possibly damaging	Het
Uba6	A	G	5: 86,284,178 (GRCm39)	Y576H	probably damaging	Het
Vegfb	G	A	19: 6,962,812 (GRCm39)	P188L	unknown	Het
Vmn1r62	A	G	7: 5,678,277 (GRCm39)		probably benign	Het
Vmn2r73	T	A	7: 85,521,902 (GRCm39)	T146S	probably benign	Het
Wdr64	A	G	1: 175,633,584 (GRCm39)	Y945C	probably damaging	Het
Zfp870	C	T	17: 33,101,904 (GRCm39)	C475Y	probably damaging	Het
Zfp958	A	T	8: 4,678,268 (GRCm39)	T98S	possibly damaging	Het

Other mutations in Chchd6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00587:Chchd6	APN	6	89,546,399 (GRCm39)	splice site	probably null
IGL02340:Chchd6	APN	6	89,396,762 (GRCm39)	missense	probably damaging	0.99
IGL02490:Chchd6	APN	6	89,361,656 (GRCm39)	missense	possibly damaging	0.90
R0557:Chchd6	UTSW	6	89,551,569 (GRCm39)	missense	probably damaging	1.00
R1170:Chchd6	UTSW	6	89,361,669 (GRCm39)	missense	probably damaging	1.00
R1341:Chchd6	UTSW	6	89,361,623 (GRCm39)	missense	probably benign	0.00
R1619:Chchd6	UTSW	6	89,396,736 (GRCm39)	missense	possibly damaging	0.95
R1757:Chchd6	UTSW	6	89,361,626 (GRCm39)	missense	probably damaging	1.00
R3886:Chchd6	UTSW	6	89,444,433 (GRCm39)	missense	probably damaging	1.00
R4627:Chchd6	UTSW	6	89,361,642 (GRCm39)	missense	probably damaging	1.00
R4635:Chchd6	UTSW	6	89,444,448 (GRCm39)	missense	probably damaging	1.00
R5518:Chchd6	UTSW	6	89,544,567 (GRCm39)	critical splice donor site	probably null
R6732:Chchd6	UTSW	6	89,551,436 (GRCm39)	missense	probably benign	0.03
R6869:Chchd6	UTSW	6	89,572,478 (GRCm39)	missense	probably damaging	1.00
R9365:Chchd6	UTSW	6	89,551,413 (GRCm39)	missense	probably benign	0.25
R9502:Chchd6	UTSW	6	89,396,763 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAAACATGAGGCATTGTGCTCC -3'
(R):5'- GAGGTTATGCTCCTATCTGCC -3'

Sequencing Primer
(F):5'- AGGCATTGTGCTCCAGGGAG -3'
(R):5'- AGAACTCTGCAGTCTGTCCATGG -3'

Posted On

2021-03-08