Mutagenetix > Incidental Mutation

Incidental Mutation 'R8678:Zc2hc1c'

661534

Institutional Source

Beutler Lab

Gene Symbol

Zc2hc1c

Ensembl Gene

ENSMUSG00000045064

Gene Name

zinc finger, C2HC-type containing 1C

Synonyms

2810002I04Rik, Fam164c

MMRRC Submission

068533-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.115) question?

Stock #

R8678 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

85321060-85346132 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 85337084 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Valine at position 247 (E247V)

Ref Sequence

ENSEMBL: ENSMUSP00000051664 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000059341] [ENSMUST00000121930]

AlphaFold

Q8CCG1

Predicted Effect

probably benign
Transcript: ENSMUST00000059341
AA Change: E247V

PolyPhen 2 Score 0.071 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000051664
Gene: ENSMUSG00000045064
AA Change: E247V

Domain	Start	End	E-Value	Type
low complexity region	93	106	N/A	INTRINSIC
coiled coil region	207	254	N/A	INTRINSIC
Pfam:zf-C2HC_2	378	402	3.6e-10	PFAM
low complexity region	433	444	N/A	INTRINSIC
Pfam:zf-C2HC_2	489	513	3.1e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000121930

SMART Domains

Protein: ENSMUSP00000112609
Gene: ENSMUSG00000008822

Domain	Start	End	E-Value	Type
Pfam:Acylphosphatase	64	156	4.5e-25	PFAM

Meta Mutation Damage Score

0.0846

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.2%
20x: 96.7%

Validation Efficiency

99% (69/70)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc5	C	T	16: 20,184,685 (GRCm39)	M991I	probably benign	Het
Acacb	T	A	5: 114,340,032 (GRCm39)	Y814*	probably null	Het
Alg2	A	G	4: 47,474,108 (GRCm39)	F60S	probably damaging	Het
Aoc1l1	C	T	6: 48,953,158 (GRCm39)	T361I	possibly damaging	Het
Arc	A	G	15: 74,543,539 (GRCm39)	L228P	probably damaging	Het
Bnip1	T	A	17: 27,008,923 (GRCm39)		probably benign	Het
Cacng4	A	G	11: 107,625,925 (GRCm39)	L222P	probably damaging	Het
Calb2	A	T	8: 110,874,275 (GRCm39)	V182E	possibly damaging	Het
Cfap44	A	T	16: 44,295,636 (GRCm39)	I1645F	probably damaging	Het
Col6a5	T	C	9: 105,811,551 (GRCm39)	D656G	unknown	Het
Csmd3	A	G	15: 47,499,849 (GRCm39)	S2096P		Het
Cyp2c70	A	T	19: 40,156,016 (GRCm39)	I178N	probably damaging	Het
Dmxl1	C	T	18: 50,004,759 (GRCm39)	Q936*	probably null	Het
Dnaaf3	A	T	7: 4,533,814 (GRCm39)	F94Y	probably damaging	Het
Eid2b	C	T	7: 27,977,480 (GRCm39)	T92I	possibly damaging	Het
Ercc8	T	C	13: 108,306,027 (GRCm39)		probably null	Het
Fank1	G	A	7: 133,463,957 (GRCm39)		probably null	Het
Fbxw19	C	A	9: 109,312,376 (GRCm39)	E324*	probably null	Het
Fcnb	A	G	2: 27,968,361 (GRCm39)	F199L	possibly damaging	Het
Galnt16	A	G	12: 80,630,822 (GRCm39)	D300G	probably damaging	Het
Gli1	T	C	10: 127,173,260 (GRCm39)	S133G	probably null	Het
Ighv5-8	TATACAT	TAT	12: 113,618,583 (GRCm39)		probably benign	Het
Irak4	A	G	15: 94,464,666 (GRCm39)	D412G	probably benign	Het
Klhl20	A	T	1: 160,936,997 (GRCm39)	I126N	probably damaging	Het
Lama1	A	G	17: 68,124,098 (GRCm39)	E2841G		Het
Lmtk3	T	A	7: 45,435,975 (GRCm39)	C85*	probably null	Het
Madd	T	C	2: 91,006,610 (GRCm39)	Y328C	probably damaging	Het
Map1a	G	T	2: 121,137,737 (GRCm39)	R2851L	probably damaging	Het
Mctp2	T	C	7: 71,752,955 (GRCm39)	D766G	probably damaging	Het
Mei4	T	A	9: 81,809,638 (GRCm39)	F240L	probably damaging	Het
Mgat3	A	T	15: 80,096,472 (GRCm39)	Y433F	possibly damaging	Het
Muc20	T	A	16: 32,617,789 (GRCm39)		probably benign	Het
Nat8f1	A	G	6: 85,887,738 (GRCm39)	V74A	probably benign	Het
Nfe2l3	A	G	6: 51,435,153 (GRCm39)	D571G	possibly damaging	Het
Nlgn3	T	C	X: 100,352,390 (GRCm39)	V179A	probably damaging	Het
Nphs1	T	C	7: 30,163,284 (GRCm39)	L480S	probably damaging	Het
Nr1d1	G	C	11: 98,660,073 (GRCm39)	R484G	probably damaging	Het
Or2ag2	A	G	7: 106,485,280 (GRCm39)	V248A	probably damaging	Het
Or4c122	T	A	2: 89,079,351 (GRCm39)	Y217F	probably damaging	Het
Or8j3b	C	T	2: 86,205,069 (GRCm39)	R229H	probably benign	Het
Parp10	C	A	15: 76,117,599 (GRCm39)	C929F	probably damaging	Het
Pcdhb21	A	G	18: 37,647,939 (GRCm39)	E356G	probably damaging	Het
Peg10	CATCAGGATCCCCATCAGGATGCACATCAGGATCCACATCAGGATGCACATCAGGATC	CATC	6: 4,756,431 (GRCm39)		probably benign	Het
Plch1	T	A	3: 63,623,468 (GRCm39)	R600*	probably null	Het
Ppp1r13l	C	A	7: 19,109,697 (GRCm39)	T706K	probably benign	Het
Ppp1r16b	G	A	2: 158,593,098 (GRCm39)	D226N	probably damaging	Het
Ppp1r16b	G	A	2: 158,598,942 (GRCm39)	R334Q	probably damaging	Het
Ppp1r7	A	G	1: 93,280,364 (GRCm39)	Q188R	probably benign	Het
Pramel26	C	A	4: 143,538,576 (GRCm39)	A132S	probably benign	Het
Prkdc	G	T	16: 15,526,796 (GRCm39)		probably null	Het
Prss33	T	C	17: 24,053,723 (GRCm39)	D118G	probably benign	Het
Rab3gap2	T	G	1: 184,983,281 (GRCm39)	I473M	probably damaging	Het
Rbm44	A	G	1: 91,080,103 (GRCm39)	E97G	probably damaging	Het
Ros1	A	G	10: 51,963,998 (GRCm39)	M1775T	probably benign	Het
Ryr1	T	A	7: 28,776,489 (GRCm39)	M2216L	probably damaging	Het
Scn7a	A	G	2: 66,574,041 (GRCm39)		probably benign	Het
Slc31a2	G	A	4: 62,210,896 (GRCm39)	V12M	probably benign	Het
Slc35b1	T	C	11: 95,278,646 (GRCm39)	Y177H	probably damaging	Het
Slfn9	T	A	11: 82,872,370 (GRCm39)	M789L	probably benign	Het
Srf	A	G	17: 46,861,825 (GRCm39)		probably null	Het
Tank	A	G	2: 61,457,287 (GRCm39)	E81G	probably damaging	Het
Tia1	T	A	6: 86,402,685 (GRCm39)	M241K	probably benign	Het
Tiam1	G	T	16: 89,681,709 (GRCm39)	S423*	probably null	Het
Tubg1	T	G	11: 101,015,264 (GRCm39)	S237A	probably benign	Het
Ubash3b	G	A	9: 40,942,785 (GRCm39)	P358S	probably benign	Het
Vmn2r3	T	C	3: 64,166,896 (GRCm39)	E745G	possibly damaging	Het
Vmn2r4	T	A	3: 64,314,391 (GRCm39)	I197F	probably benign	Het
Vps37d	C	A	5: 135,105,386 (GRCm39)	R79L	probably damaging	Het
Wdr7	T	A	18: 63,910,768 (GRCm39)	L720Q	probably damaging	Het
Xkr5	T	C	8: 18,984,048 (GRCm39)	N498S	probably benign	Het

Other mutations in Zc2hc1c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01763:Zc2hc1c	APN	12	85,336,450 (GRCm39)	missense	probably benign	0.03
IGL02677:Zc2hc1c	APN	12	85,336,850 (GRCm39)	missense	probably benign	0.31
R1053:Zc2hc1c	UTSW	12	85,343,330 (GRCm39)	missense	probably damaging	1.00
R1696:Zc2hc1c	UTSW	12	85,337,555 (GRCm39)	missense	possibly damaging	0.86
R1724:Zc2hc1c	UTSW	12	85,336,586 (GRCm39)	missense	probably benign	0.00
R1905:Zc2hc1c	UTSW	12	85,337,288 (GRCm39)	missense	probably benign	0.03
R1996:Zc2hc1c	UTSW	12	85,343,434 (GRCm39)	missense	probably benign	0.31
R4463:Zc2hc1c	UTSW	12	85,337,071 (GRCm39)	missense	probably damaging	0.97
R4834:Zc2hc1c	UTSW	12	85,336,982 (GRCm39)	missense	probably damaging	1.00
R5070:Zc2hc1c	UTSW	12	85,337,288 (GRCm39)	missense	probably benign	0.03
R5943:Zc2hc1c	UTSW	12	85,336,483 (GRCm39)	missense	probably damaging	1.00
R6184:Zc2hc1c	UTSW	12	85,343,218 (GRCm39)	missense	probably damaging	0.96
R6701:Zc2hc1c	UTSW	12	85,336,446 (GRCm39)	splice site	probably null
R6704:Zc2hc1c	UTSW	12	85,337,258 (GRCm39)	missense	possibly damaging	0.84
R6719:Zc2hc1c	UTSW	12	85,337,446 (GRCm39)	missense	probably damaging	1.00
R7665:Zc2hc1c	UTSW	12	85,343,336 (GRCm39)	missense	possibly damaging	0.69
R8125:Zc2hc1c	UTSW	12	85,343,386 (GRCm39)	missense	probably damaging	1.00
R8154:Zc2hc1c	UTSW	12	85,336,946 (GRCm39)	missense	probably benign	0.00
R8268:Zc2hc1c	UTSW	12	85,336,595 (GRCm39)	missense	probably benign	0.02
R8356:Zc2hc1c	UTSW	12	85,337,471 (GRCm39)	missense	probably damaging	0.97
R8875:Zc2hc1c	UTSW	12	85,336,549 (GRCm39)	missense	possibly damaging	0.87
R9056:Zc2hc1c	UTSW	12	85,343,230 (GRCm39)	small deletion	probably benign

Predicted Primers

PCR Primer
(F):5'- AGCTGGGTGAATTCATCTCTTCTTG -3'
(R):5'- TAATCAGAGAGCTGGCGTGG -3'

Sequencing Primer
(F):5'- TCTTGCCTCTGTGCAGGCAG -3'
(R):5'- GGTTTTCCTGAGCCTGATCACAAG -3'

Posted On

2021-03-08