Mutagenetix > Incidental Mutation

Incidental Mutation 'R8686:Lrif1'

662025

Institutional Source

Beutler Lab

Gene Symbol

Lrif1

Ensembl Gene

ENSMUSG00000056260

Gene Name

ligand dependent nuclear receptor interacting factor 1

Synonyms

2010012G17Rik, 4933421E11Rik

MMRRC Submission

068541-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.067) question?

Stock #

R8686 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

106684987-106736577 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 106732781 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 394 (T394I)

Ref Sequence

ENSEMBL: ENSMUSP00000096346 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098750] [ENSMUST00000098751] [ENSMUST00000106736] [ENSMUST00000127003] [ENSMUST00000130105] [ENSMUST00000150513] [ENSMUST00000154973]

AlphaFold

Q8CDD9

Predicted Effect

probably damaging
Transcript: ENSMUST00000098750
AA Change: T394I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000096346
Gene: ENSMUSG00000056260
AA Change: T394I

Domain	Start	End	E-Value	Type
Pfam:LRIF1	22	753	1.7e-292	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000098751

SMART Domains

Protein: ENSMUSP00000096347
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	104	117	N/A	INTRINSIC
coiled coil region	225	257	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106736

SMART Domains

Protein: ENSMUSP00000102347
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	84	97	N/A	INTRINSIC
coiled coil region	205	237	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000127003
AA Change: T394I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000114163
Gene: ENSMUSG00000056260
AA Change: T394I

Domain	Start	End	E-Value	Type
low complexity region	74	92	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000130105

SMART Domains

Protein: ENSMUSP00000115110
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	49	67	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000150513

SMART Domains

Protein: ENSMUSP00000119815
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	49	67	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154973

SMART Domains

Protein: ENSMUSP00000120350
Gene: ENSMUSG00000056260

Domain	Start	End	E-Value	Type
low complexity region	49	67	N/A	INTRINSIC

Meta Mutation Damage Score

0.1323

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

100% (58/58)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1300017J02Rik	C	T	9: 103,259,428 (GRCm38)	A525T	probably benign	Het
Adam25	A	G	8: 40,755,484 (GRCm38)	T596A	probably benign	Het
Adamts6	A	G	13: 104,313,699 (GRCm38)	I303V	probably damaging	Het
Alpl	A	T	4: 137,743,801 (GRCm38)	H341Q	probably damaging	Het
Cachd1	G	A	4: 100,988,128 (GRCm38)	R939H	probably damaging	Het
Ccdc114	A	G	7: 45,947,692 (GRCm38)	T456A	probably benign	Het
Cd22	G	A	7: 30,870,069 (GRCm38)	R541C	probably benign	Het
Cenpf	A	T	1: 189,659,604 (GRCm38)	M660K	probably benign	Het
Cmya5	A	T	13: 93,095,380 (GRCm38)	S1067T	possibly damaging	Het
Col5a2	C	T	1: 45,421,987 (GRCm38)	G250D	probably damaging	Het
Cylc2	C	T	4: 51,229,651 (GRCm38)	T331M	unknown	Het
Dgka	A	G	10: 128,733,093 (GRCm38)	M201T	probably benign	Het
Dnajc13	T	C	9: 104,170,805 (GRCm38)	I1804V	probably benign	Het
Dym	T	A	18: 75,286,683 (GRCm38)	Y642N	probably damaging	Het
Efr3b	A	T	12: 4,000,886 (GRCm38)	D26E	probably damaging	Het
Emilin1	A	T	5: 30,917,696 (GRCm38)	K427M	possibly damaging	Het
Fam187b	T	C	7: 30,977,234 (GRCm38)	L56S	probably benign	Het
Fbxo18	C	T	2: 11,755,658 (GRCm38)	V694I	probably benign	Het
Fgd2	C	T	17: 29,379,023 (GRCm38)	T644I	probably benign	Het
G6pc	T	G	11: 101,374,707 (GRCm38)		probably null	Het
Gli2	A	G	1: 118,836,687 (GRCm38)	S1245P	probably benign	Het
Gm10696	T	C	3: 94,176,120 (GRCm38)	D128G	probably benign	Het
Gpr137b	T	C	13: 13,359,406 (GRCm38)	Y355C		Het
Ighv1-84	T	C	12: 115,980,904 (GRCm38)	D50G	probably benign	Het
Impdh1	C	A	6: 29,216,215 (GRCm38)		probably benign	Het
Irf4	A	T	13: 30,761,450 (GRCm38)	D393V	possibly damaging	Het
Kalrn	A	G	16: 34,360,935 (GRCm38)	L111P	probably damaging	Het
Lrch3	T	C	16: 32,981,853 (GRCm38)	V58A	possibly damaging	Het
Map4k1	A	G	7: 28,994,073 (GRCm38)	T434A	probably benign	Het
Mcur1	G	A	13: 43,541,717 (GRCm38)	T327M	probably damaging	Het
Mettl7b	A	T	10: 128,960,607 (GRCm38)	M111K	possibly damaging	Het
Myo9b	G	T	8: 71,334,322 (GRCm38)	S716I	probably benign	Het
Nol10	T	A	12: 17,369,771 (GRCm38)		probably benign	Het
Nos3	A	G	5: 24,368,843 (GRCm38)	T202A	possibly damaging	Het
Olfr128	T	C	17: 37,924,277 (GRCm38)	V237A	probably benign	Het
Olfr710	A	C	7: 106,944,698 (GRCm38)	M101R	probably benign	Het
Parp12	A	T	6: 39,117,922 (GRCm38)	S80T	probably benign	Het
Pde1a	C	T	2: 79,927,742 (GRCm38)	V50I	probably benign	Het
Pfkl	A	T	10: 77,997,522 (GRCm38)		probably null	Het
Phkg1	A	T	5: 129,866,215 (GRCm38)	Y207N	probably damaging	Het
Pik3r4	A	G	9: 105,658,529 (GRCm38)	T640A	possibly damaging	Het
Pip5k1c	C	A	10: 81,311,993 (GRCm38)	H411N	probably damaging	Het
Pla2g4e	A	G	2: 120,244,691 (GRCm38)	S73P	probably damaging	Het
Polr2b	T	C	5: 77,335,663 (GRCm38)	V662A	probably damaging	Het
Prss43	C	T	9: 110,829,426 (GRCm38)	R265C	possibly damaging	Het
Rap1b	A	T	10: 117,822,841 (GRCm38)	V29D	probably damaging	Het
Rraga	A	G	4: 86,576,811 (GRCm38)	E298G	probably damaging	Het
Rrp8	A	T	7: 105,733,574 (GRCm38)	I418N	probably damaging	Het
Siglecf	T	C	7: 43,355,606 (GRCm38)	V420A	probably benign	Het
Snx14	T	A	9: 88,415,693 (GRCm38)	N174I	probably damaging	Het
Speer4e	T	C	5: 14,934,115 (GRCm38)	N229S	probably benign	Het
Teddm3	A	G	16: 21,152,935 (GRCm38)	*295Q	probably null	Het
Tfap2c	A	G	2: 172,552,006 (GRCm38)	D245G	possibly damaging	Het
Tfap2d	A	G	1: 19,108,284 (GRCm38)	N191S	probably benign	Het
Unc80	A	G	1: 66,612,268 (GRCm38)	R1591G	possibly damaging	Het
Vmn1r116	T	C	7: 20,872,691 (GRCm38)	W146R	probably damaging	Het
Vps13b	C	G	15: 35,925,389 (GRCm38)	S3823R	probably damaging	Het
Wiz	T	A	17: 32,367,847 (GRCm38)	D163V	probably damaging	Het
Xylt1	G	C	7: 117,381,359 (GRCm38)	A61P	unknown	Het
Zfp521	A	C	18: 13,845,644 (GRCm38)	F571V	probably damaging	Het
Zfp664	T	A	5: 124,886,069 (GRCm38)	C176S	possibly damaging	Het
Zfyve26	T	C	12: 79,287,453 (GRCm38)	N264D	probably benign	Het

Other mutations in Lrif1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00870:Lrif1	APN	3	106,734,641 (GRCm38)	critical splice donor site	probably null
IGL01121:Lrif1	APN	3	106,735,664 (GRCm38)	nonsense	probably null
IGL01304:Lrif1	APN	3	106,731,733 (GRCm38)	missense	probably damaging	1.00
IGL02209:Lrif1	APN	3	106,731,729 (GRCm38)	missense	probably damaging	1.00
IGL02801:Lrif1	APN	3	106,734,614 (GRCm38)	missense	possibly damaging	0.89
IGL02796:Lrif1	UTSW	3	106,735,436 (GRCm38)	missense	probably benign	0.25
R0440:Lrif1	UTSW	3	106,734,398 (GRCm38)	missense	possibly damaging	0.87
R0456:Lrif1	UTSW	3	106,731,778 (GRCm38)	missense	probably benign	0.06
R0561:Lrif1	UTSW	3	106,732,165 (GRCm38)	missense	probably damaging	1.00
R1160:Lrif1	UTSW	3	106,732,717 (GRCm38)	missense	possibly damaging	0.95
R1720:Lrif1	UTSW	3	106,733,136 (GRCm38)	missense	probably damaging	1.00
R1735:Lrif1	UTSW	3	106,735,846 (GRCm38)	makesense	probably null
R1843:Lrif1	UTSW	3	106,732,811 (GRCm38)	missense	probably damaging	0.99
R2016:Lrif1	UTSW	3	106,732,206 (GRCm38)	missense	possibly damaging	0.94
R2200:Lrif1	UTSW	3	106,734,558 (GRCm38)	missense	probably damaging	0.98
R3619:Lrif1	UTSW	3	106,732,546 (GRCm38)	missense	probably damaging	1.00
R4750:Lrif1	UTSW	3	106,735,564 (GRCm38)	missense	probably benign	0.33
R4878:Lrif1	UTSW	3	106,735,640 (GRCm38)	missense	probably damaging	1.00
R4945:Lrif1	UTSW	3	106,735,753 (GRCm38)	missense	probably damaging	1.00
R5286:Lrif1	UTSW	3	106,732,543 (GRCm38)	missense	probably damaging	0.97
R5682:Lrif1	UTSW	3	106,732,568 (GRCm38)	missense	possibly damaging	0.70
R6149:Lrif1	UTSW	3	106,732,327 (GRCm38)	missense	possibly damaging	0.83
R6665:Lrif1	UTSW	3	106,735,343 (GRCm38)	splice site	probably null
R7011:Lrif1	UTSW	3	106,732,285 (GRCm38)	missense	probably damaging	1.00
R7584:Lrif1	UTSW	3	106,731,901 (GRCm38)	missense	probably benign	0.32
R7869:Lrif1	UTSW	3	106,733,143 (GRCm38)	critical splice donor site	probably null
R8247:Lrif1	UTSW	3	106,734,376 (GRCm38)	missense	probably damaging	1.00
R9001:Lrif1	UTSW	3	106,734,544 (GRCm38)	missense	probably benign	0.00
R9347:Lrif1	UTSW	3	106,734,358 (GRCm38)	missense	possibly damaging	0.71
R9612:Lrif1	UTSW	3	106,731,884 (GRCm38)	missense	probably damaging	0.99
Z1088:Lrif1	UTSW	3	106,732,570 (GRCm38)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- ACCAACAGTTCTGGCAGGAC -3'
(R):5'- CAGTCTTACTCTGTTTAAGGCAGTGAG -3'

Sequencing Primer
(F):5'- AGTTCTGGCAGGACACACTC -3'
(R):5'- ACTCTGTTTAAGGCAGTGAGTGGAC -3'

Posted On

2021-03-08