Mutagenetix > Incidental Mutation

Incidental Mutation 'R8725:Sh2d4a'

662358

Institutional Source

Beutler Lab

Gene Symbol

Sh2d4a

Ensembl Gene

ENSMUSG00000053886

Gene Name

SH2 domain containing 4A

Synonyms

SH2A, 2210402M20Rik

MMRRC Submission

068574-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8725 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

68729219-68800351 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 68798695 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 348 (Y348C)

Ref Sequence

ENSEMBL: ENSMUSP00000070825 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000066594]

AlphaFold

Q9D7V1

Predicted Effect

probably damaging
Transcript: ENSMUST00000066594
AA Change: Y348C

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000070825
Gene: ENSMUSG00000053886
AA Change: Y348C

Domain	Start	End	E-Value	Type
low complexity region	248	266	N/A	INTRINSIC
SH2	313	396	2.5e-22	SMART

Predicted Effect

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.5%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele display normal T cell development, homeostasis, proliferation, and function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A630089N07Rik	C	T	16: 97,867,651 (GRCm39)	A104T	probably damaging	Het
Abhd18	T	A	3: 40,884,627 (GRCm39)	L222Q	probably damaging	Het
Adam30	C	T	3: 98,070,348 (GRCm39)	T727M	possibly damaging	Het
Adh6b	A	T	3: 138,058,729 (GRCm39)	Q137L	probably damaging	Het
Alpl	C	T	4: 137,475,127 (GRCm39)	V269I	probably benign	Het
Ang2	C	T	14: 51,432,996 (GRCm39)	G129S	probably benign	Het
Atp6v0a1	A	T	11: 100,920,015 (GRCm39)	H216L	possibly damaging	Het
BC030500	C	T	8: 59,366,049 (GRCm39)	T61I	unknown	Het
Brpf1	T	G	6: 113,293,491 (GRCm39)	L520R	probably damaging	Het
Btbd10	A	G	7: 112,927,626 (GRCm39)	I243T	possibly damaging	Het
Bub1	C	A	2: 127,646,139 (GRCm39)	C947F	probably damaging	Het
C4b	T	C	17: 34,953,459 (GRCm39)	E1008G	probably damaging	Het
Ccdc40	A	G	11: 119,155,323 (GRCm39)	T1188A	probably benign	Het
Cdcp3	A	G	7: 130,875,485 (GRCm39)	T1770A	unknown	Het
Cnn1	G	T	9: 22,010,557 (GRCm39)		probably benign	Het
Colgalt2	T	C	1: 152,360,662 (GRCm39)	M233T	probably damaging	Het
Cox15	A	T	19: 43,735,181 (GRCm39)	C195*	probably null	Het
Cped1	A	T	6: 22,059,941 (GRCm39)	R202S	possibly damaging	Het
Dact2	A	T	17: 14,417,146 (GRCm39)	C351*	probably null	Het
Dbnl	A	G	11: 5,738,582 (GRCm39)	N8S	probably benign	Het
Depdc1a	T	A	3: 159,228,356 (GRCm39)	N369K	probably benign	Het
Dnah2	A	T	11: 69,415,005 (GRCm39)	L243Q	probably damaging	Het
Dscaml1	T	A	9: 45,341,759 (GRCm39)	Y57N	probably benign	Het
Eif2b3	A	G	4: 116,927,944 (GRCm39)	T388A	probably benign	Het
Eif4h	A	C	5: 134,654,393 (GRCm39)		probably null	Het
Elf1	C	T	14: 79,810,667 (GRCm39)	Q288*	probably null	Het
Fgl2	C	T	5: 21,580,677 (GRCm39)	R340*	probably null	Het
Fut4	T	C	9: 14,662,082 (GRCm39)	D404G	probably damaging	Het
Glmn	G	A	5: 107,718,152 (GRCm39)	P255L	probably benign	Het
Gm14322	C	T	2: 177,411,481 (GRCm39)	T97I	probably benign	Het
Gm44511	C	A	6: 128,797,997 (GRCm39)	C32F	probably damaging	Het
Gm5478	A	G	15: 101,553,871 (GRCm39)	F247S	probably damaging	Het
Golgb1	T	A	16: 36,739,563 (GRCm39)	M2675K	probably damaging	Het
Hectd1	T	C	12: 51,849,000 (GRCm39)	D368G	possibly damaging	Het
Hnrnpul2	A	G	19: 8,798,064 (GRCm39)	N140S	probably benign	Het
Htr4	A	T	18: 62,561,209 (GRCm39)	I157L	probably damaging	Het
Kcnma1	T	G	14: 23,436,332 (GRCm39)	M790L	probably benign	Het
Kcnv1	G	A	15: 44,977,999 (GRCm39)	S13L	unknown	Het
Kctd20	C	T	17: 29,184,025 (GRCm39)	R312*	probably null	Het
Kdm3b	T	A	18: 34,960,435 (GRCm39)	I1340N	probably damaging	Het
Kdm6b	A	G	11: 69,292,919 (GRCm39)	F1286L	unknown	Het
Knl1	T	A	2: 118,899,524 (GRCm39)	F408L	probably benign	Het
Lypd5	G	T	7: 24,053,101 (GRCm39)	G253W	probably damaging	Het
Mea1	A	G	17: 46,992,614 (GRCm39)	T21A	probably benign	Het
Metrnl	A	G	11: 121,606,842 (GRCm39)	E299G	possibly damaging	Het
Muc5ac	C	T	7: 141,363,481 (GRCm39)		probably benign	Het
Nbn	G	A	4: 15,963,911 (GRCm39)	S104N	probably damaging	Het
Nxpe2	A	T	9: 48,238,073 (GRCm39)	F61I	probably benign	Het
Or6c1b	T	C	10: 129,273,334 (GRCm39)	Y218H	probably benign	Het
Or6c70	T	A	10: 129,710,092 (GRCm39)	D178V	probably damaging	Het
Pgr	C	A	9: 8,901,544 (GRCm39)	P359Q	probably damaging	Het
Pi4k2b	G	A	5: 52,908,031 (GRCm39)	V157I	probably benign	Het
Plekhm1	A	C	11: 103,258,444 (GRCm39)	F1031L	probably damaging	Het
Pltp	A	G	2: 164,696,301 (GRCm39)	S124P	probably damaging	Het
Polr3gl	T	A	3: 96,487,154 (GRCm39)	E177V	probably benign	Het
Pstk	G	T	7: 130,973,024 (GRCm39)	R41L	possibly damaging	Het
Rasgrp1	T	C	2: 117,119,158 (GRCm39)	E493G	probably benign	Het
Rtn3	A	G	19: 7,434,726 (GRCm39)	L422P	probably benign	Het
Rusc2	C	T	4: 43,401,351 (GRCm39)		probably benign	Het
Sbno2	A	G	10: 79,911,090 (GRCm39)	F6S	probably benign	Het
Sh3rf3	A	G	10: 58,939,992 (GRCm39)		probably null	Het
Sipa1l2	T	C	8: 126,177,125 (GRCm39)	E1163G	probably benign	Het
Strip1	G	C	3: 107,521,964 (GRCm39)	A738G	probably damaging	Het
Tdrkh	C	T	3: 94,333,299 (GRCm39)	R255C	probably benign	Het
Tln1	A	T	4: 43,555,911 (GRCm39)	M101K	possibly damaging	Het
Trav6-2	A	C	14: 52,905,028 (GRCm39)		probably benign	Het
Tspan11	A	T	6: 127,900,674 (GRCm39)	I82F	possibly damaging	Het
Ttn	T	C	2: 76,779,320 (GRCm39)	K1233E	unknown	Het
Usp29	A	T	7: 6,965,917 (GRCm39)	S587C	probably damaging	Het
Vmn1r235	A	T	17: 21,482,056 (GRCm39)	Q127L	probably damaging	Het
Vmn1r65	C	A	7: 6,011,503 (GRCm39)	A244S	probably damaging	Het
Vmn2r18	A	G	5: 151,508,462 (GRCm39)	S221P	probably damaging	Het
Zfp229	T	C	17: 21,964,828 (GRCm39)	S353P	probably damaging	Het
Zpld2	T	C	4: 133,930,150 (GRCm39)	K52E	probably benign	Het

Other mutations in Sh2d4a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00807:Sh2d4a	APN	8	68,782,018 (GRCm39)	splice site	probably null
R0078:Sh2d4a	UTSW	8	68,734,973 (GRCm39)	missense	probably damaging	0.98
R0608:Sh2d4a	UTSW	8	68,799,346 (GRCm39)	missense	possibly damaging	0.92
R0701:Sh2d4a	UTSW	8	68,783,747 (GRCm39)	missense	probably damaging	1.00
R0924:Sh2d4a	UTSW	8	68,787,775 (GRCm39)	missense	probably damaging	1.00
R0930:Sh2d4a	UTSW	8	68,787,775 (GRCm39)	missense	probably damaging	1.00
R1690:Sh2d4a	UTSW	8	68,747,101 (GRCm39)	missense	probably benign	0.00
R1744:Sh2d4a	UTSW	8	68,783,807 (GRCm39)	missense	possibly damaging	0.93
R1864:Sh2d4a	UTSW	8	68,781,967 (GRCm39)	missense	probably benign	0.38
R2011:Sh2d4a	UTSW	8	68,799,394 (GRCm39)	missense	probably benign	0.02
R2014:Sh2d4a	UTSW	8	68,783,735 (GRCm39)	missense	probably damaging	1.00
R2172:Sh2d4a	UTSW	8	68,749,316 (GRCm39)	missense	probably benign	0.00
R4010:Sh2d4a	UTSW	8	68,787,799 (GRCm39)	missense	probably damaging	1.00
R4542:Sh2d4a	UTSW	8	68,799,394 (GRCm39)	missense	probably benign	0.01
R5522:Sh2d4a	UTSW	8	68,749,349 (GRCm39)	missense	probably benign	0.38
R6627:Sh2d4a	UTSW	8	68,746,970 (GRCm39)	missense	probably damaging	1.00
R7482:Sh2d4a	UTSW	8	68,749,328 (GRCm39)	missense	probably benign
R7807:Sh2d4a	UTSW	8	68,735,033 (GRCm39)	missense	probably benign	0.00
R7955:Sh2d4a	UTSW	8	68,781,907 (GRCm39)	missense	probably benign	0.10
R8727:Sh2d4a	UTSW	8	68,798,695 (GRCm39)	missense	probably damaging	1.00
R9364:Sh2d4a	UTSW	8	68,747,018 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTCTAATTCATATAGGGAGGGGC -3'
(R):5'- AGCTATATCCCTAGTCAGGCCTTTC -3'

Sequencing Primer
(F):5'- CAACAGAGGAGTACTTTGTAGGGAC -3'
(R):5'- CAAATCTGCCAGTGTAGCA -3'

Posted On

2021-03-08