Mutagenetix > Incidental Mutation

Incidental Mutation 'R8730:Dcst2'

662689

Institutional Source

Beutler Lab

Gene Symbol

Dcst2

Ensembl Gene

ENSMUSG00000109293

Gene Name

DC-STAMP domain containing 2

Synonyms

LOC329702

MMRRC Submission

068578-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.111) question?

Stock #

R8730 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

89269282-89284856 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 89280553 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Cysteine at position 620 (R620C)

Ref Sequence

ENSEMBL: ENSMUSP00000146838 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029677] [ENSMUST00000107432] [ENSMUST00000107433] [ENSMUST00000107435] [ENSMUST00000208216]

AlphaFold

A0A140LIJ0

Predicted Effect

probably benign
Transcript: ENSMUST00000029677

SMART Domains

Protein: ENSMUSP00000029677
Gene: ENSMUSG00000028042

Domain	Start	End	E-Value	Type
BTB	34	145	1.45e-26	SMART
low complexity region	167	176	N/A	INTRINSIC
low complexity region	184	211	N/A	INTRINSIC
low complexity region	244	259	N/A	INTRINSIC
low complexity region	275	285	N/A	INTRINSIC
ZnF_C2H2	350	372	5.72e-1	SMART
ZnF_C2H2	378	400	5.99e-4	SMART
ZnF_C2H2	406	428	3.83e-2	SMART
ZnF_C2H2	434	454	8.98e0	SMART
low complexity region	477	486	N/A	INTRINSIC
low complexity region	511	539	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107432

SMART Domains

Protein: ENSMUSP00000103055
Gene: ENSMUSG00000028042

Domain	Start	End	E-Value	Type
BTB	34	145	1.45e-26	SMART
low complexity region	167	176	N/A	INTRINSIC
low complexity region	184	211	N/A	INTRINSIC
low complexity region	244	259	N/A	INTRINSIC
low complexity region	275	285	N/A	INTRINSIC
ZnF_C2H2	350	372	5.72e-1	SMART
ZnF_C2H2	378	400	5.99e-4	SMART
ZnF_C2H2	406	428	3.83e-2	SMART
ZnF_C2H2	434	454	8.98e0	SMART
low complexity region	477	486	N/A	INTRINSIC
low complexity region	511	539	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107433

SMART Domains

Protein: ENSMUSP00000103056
Gene: ENSMUSG00000028042

Domain	Start	End	E-Value	Type
BTB	34	145	1.45e-26	SMART
low complexity region	167	176	N/A	INTRINSIC
low complexity region	184	211	N/A	INTRINSIC
low complexity region	244	259	N/A	INTRINSIC
low complexity region	275	285	N/A	INTRINSIC
ZnF_C2H2	350	372	5.72e-1	SMART
ZnF_C2H2	378	400	5.99e-4	SMART
ZnF_C2H2	406	428	3.83e-2	SMART
ZnF_C2H2	434	454	8.98e0	SMART
low complexity region	477	486	N/A	INTRINSIC
low complexity region	511	539	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107435

SMART Domains

Protein: ENSMUSP00000103058
Gene: ENSMUSG00000028042

Domain	Start	End	E-Value	Type
BTB	34	145	1.45e-26	SMART
low complexity region	167	176	N/A	INTRINSIC
low complexity region	184	211	N/A	INTRINSIC
low complexity region	244	259	N/A	INTRINSIC
low complexity region	275	285	N/A	INTRINSIC
ZnF_C2H2	350	372	5.72e-1	SMART
ZnF_C2H2	378	400	5.99e-4	SMART
ZnF_C2H2	406	428	3.83e-2	SMART
ZnF_C2H2	434	454	8.98e0	SMART
low complexity region	477	486	N/A	INTRINSIC
low complexity region	511	539	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000208216
AA Change: R620C

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.3%

Validation Efficiency

100% (57/57)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam22	A	C	5: 8,208,830 (GRCm39)	S200A	probably benign	Het
Adgrg3	G	A	8: 95,766,556 (GRCm39)	R409H	probably benign	Het
Aldh1l2	C	T	10: 83,342,506 (GRCm39)	V548M	possibly damaging	Het
Ampd1	T	A	3: 102,992,676 (GRCm39)	C143*	probably null	Het
Angpt4	A	G	2: 151,771,467 (GRCm39)	Q261R	probably damaging	Het
Ccar1	T	C	10: 62,601,191 (GRCm39)	K491E	probably damaging	Het
Cd177	A	T	7: 24,457,501 (GRCm39)	M180K	possibly damaging	Het
Dcun1d4	T	A	5: 73,688,832 (GRCm39)		probably benign	Het
Dhrs1	T	A	14: 55,980,978 (GRCm39)	T103S	probably benign	Het
Dnah2	A	G	11: 69,384,087 (GRCm39)	L1043P	possibly damaging	Het
Eci3	A	T	13: 35,144,405 (GRCm39)	N19K	probably benign	Het
Ets1	A	T	9: 32,649,614 (GRCm39)	D317V	probably damaging	Het
Fem1c	T	C	18: 46,638,668 (GRCm39)	I445V	possibly damaging	Het
Gabpb1	T	C	2: 126,492,484 (GRCm39)	I176M	possibly damaging	Het
Gm6563	A	T	19: 23,653,429 (GRCm39)	K73I	probably damaging	Het
Grap2	A	G	15: 80,532,140 (GRCm39)	R252G	possibly damaging	Het
Gsx1	T	C	5: 147,126,651 (GRCm39)	L158P	probably damaging	Het
Hand2	T	A	8: 57,775,468 (GRCm39)	V176E	probably benign	Het
Hey2	G	T	10: 30,718,622 (GRCm39)	T8K	possibly damaging	Het
Igsf3	T	C	3: 101,334,532 (GRCm39)	I203T	probably benign	Het
Itgax	G	A	7: 127,739,066 (GRCm39)		probably null	Het
Kcnn2	A	G	18: 45,725,139 (GRCm39)	I212V	possibly damaging	Het
Kcnu1	G	T	8: 26,403,708 (GRCm39)	V740L	probably damaging	Het
Kcnv1	A	G	15: 44,972,797 (GRCm39)	I362T	probably damaging	Het
Klhdc9	C	T	1: 171,186,488 (GRCm39)	G316D	probably damaging	Het
Mcmbp	T	C	7: 128,317,738 (GRCm39)	E169G	probably damaging	Het
Muc20	G	T	16: 32,599,490 (GRCm39)	H645N	probably benign	Het
Nrm	A	G	17: 36,175,423 (GRCm39)	T52A	probably benign	Het
Or13a23-ps1	T	C	7: 140,119,197 (GRCm39)	S256P	unknown	Het
Or14c41	A	G	7: 86,235,259 (GRCm39)	K259E	probably benign	Het
Or2y3	A	T	17: 38,392,925 (GRCm39)	*315K	probably null	Het
Or4c105	T	A	2: 88,648,043 (GRCm39)	M176K	possibly damaging	Het
Or4g7	T	A	2: 111,309,934 (GRCm39)	D268E	probably damaging	Het
Or51f23	T	C	7: 102,453,348 (GRCm39)	V221A	probably benign	Het
Pde11a	A	T	2: 75,889,334 (GRCm39)	N713K	probably damaging	Het
Pfpl	T	C	19: 12,405,944 (GRCm39)	L65S	probably damaging	Het
Prox1	A	G	1: 189,894,238 (GRCm39)	V69A	possibly damaging	Het
Prss39	A	G	1: 34,539,198 (GRCm39)	H146R	probably damaging	Het
Pxt1	A	T	17: 29,153,702 (GRCm39)	F44I	possibly damaging	Het
Rbp3	A	G	14: 33,677,795 (GRCm39)	D581G	probably benign	Het
Rims2	A	G	15: 39,381,239 (GRCm39)	T1057A	probably benign	Het
Robo1	G	A	16: 72,786,495 (GRCm39)	G836R	probably benign	Het
Slc34a3	A	T	2: 25,122,057 (GRCm39)	S155T	possibly damaging	Het
Slc35d1	T	C	4: 103,030,951 (GRCm39)	Y308C		Het
Slfn9	T	C	11: 82,878,194 (GRCm39)	I312V	possibly damaging	Het
St3gal5	T	A	6: 72,130,461 (GRCm39)	L351Q	probably damaging	Het
Tanc1	A	G	2: 59,601,590 (GRCm39)	D157G	probably benign	Het
Tmprss11g	C	T	5: 86,638,837 (GRCm39)		probably null	Het
Tnpo1	A	T	13: 98,989,916 (GRCm39)	I745N	probably benign	Het
Uggt1	C	A	1: 36,236,624 (GRCm39)		probably null	Het
Ugt8a	G	A	3: 125,732,105 (GRCm39)		probably benign	Het
Urod	T	C	4: 116,850,729 (GRCm39)		probably benign	Het
Vmn1r211	A	T	13: 23,035,838 (GRCm39)	Y276*	probably null	Het
Vwa3a	T	A	7: 120,381,910 (GRCm39)	S582T	probably damaging	Het
Zfp869	A	T	8: 70,159,177 (GRCm39)	C465*	probably null	Het

Other mutations in Dcst2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0049:Dcst2	UTSW	3	89,278,913 (GRCm39)	missense	probably benign	0.04
R6113:Dcst2	UTSW	3	89,275,192 (GRCm39)	missense	possibly damaging	0.86
R6523:Dcst2	UTSW	3	89,280,808 (GRCm39)	missense	probably benign	0.03
R7212:Dcst2	UTSW	3	89,273,607 (GRCm39)	missense	probably benign	0.00
R7260:Dcst2	UTSW	3	89,273,593 (GRCm39)	missense	probably damaging	1.00
R7422:Dcst2	UTSW	3	89,273,993 (GRCm39)	missense	probably damaging	1.00
R7559:Dcst2	UTSW	3	89,276,021 (GRCm39)	missense	possibly damaging	0.93
R8418:Dcst2	UTSW	3	89,278,901 (GRCm39)	missense	probably benign	0.24
R8698:Dcst2	UTSW	3	89,276,044 (GRCm39)	missense	probably benign	0.30
R9162:Dcst2	UTSW	3	89,274,088 (GRCm39)	nonsense	probably null
R9620:Dcst2	UTSW	3	89,277,825 (GRCm39)	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- ACATAACAGCCTTCCTTTAGCC -3'
(R):5'- GTCCCTGCAAAAGCCTACTG -3'

Sequencing Primer
(F):5'- AGCCCCTTTCCCCTATAATGTC -3'
(R):5'- GTCTCAATGACCTACAGATATCCTGG -3'

Posted On

2021-03-08