Incidental Mutation 'R8745:Scmh1'
ID 663476
Institutional Source Beutler Lab
Gene Symbol Scmh1
Ensembl Gene ENSMUSG00000000085
Gene Name sex comb on midleg homolog 1
Synonyms Scml3
MMRRC Submission 068589-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R8745 (G1)
Quality Score 225.009
Status Not validated
Chromosome 4
Chromosomal Location 120262478-120387383 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) T to A at 120362559 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Stop codon at position 265 (L265*)
Ref Sequence ENSEMBL: ENSMUSP00000000087 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000000087] [ENSMUST00000064991] [ENSMUST00000106298] [ENSMUST00000106301]
AlphaFold Q8K214
Predicted Effect probably null
Transcript: ENSMUST00000000087
AA Change: L265*
SMART Domains Protein: ENSMUSP00000000087
Gene: ENSMUSG00000000085
AA Change: L265*

DomainStartEndE-ValueType
MBT 28 126 2.47e-48 SMART
MBT 134 235 1.36e-45 SMART
low complexity region 268 285 N/A INTRINSIC
low complexity region 301 340 N/A INTRINSIC
Pfam:DUF3588 354 468 4.3e-50 PFAM
SAM 594 662 1.8e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000064991
AA Change: L265*
SMART Domains Protein: ENSMUSP00000069813
Gene: ENSMUSG00000000085
AA Change: L265*

DomainStartEndE-ValueType
MBT 28 126 2.47e-48 SMART
MBT 134 235 1.36e-45 SMART
low complexity region 268 285 N/A INTRINSIC
low complexity region 301 340 N/A INTRINSIC
Pfam:DUF3588 357 465 5.8e-39 PFAM
SAM 594 662 1.57e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000106298
AA Change: L265*
SMART Domains Protein: ENSMUSP00000101905
Gene: ENSMUSG00000000085
AA Change: L265*

DomainStartEndE-ValueType
MBT 28 126 2.47e-48 SMART
MBT 134 235 1.36e-45 SMART
low complexity region 268 285 N/A INTRINSIC
low complexity region 301 340 N/A INTRINSIC
Pfam:DUF3588 354 468 4.3e-50 PFAM
SAM 594 662 1.8e-10 SMART
Predicted Effect probably null
Transcript: ENSMUST00000106301
AA Change: L265*
SMART Domains Protein: ENSMUSP00000101908
Gene: ENSMUSG00000000085
AA Change: L265*

DomainStartEndE-ValueType
MBT 28 126 2.47e-48 SMART
MBT 134 235 1.36e-45 SMART
low complexity region 268 285 N/A INTRINSIC
low complexity region 301 340 N/A INTRINSIC
Pfam:DUF3588 354 468 4.7e-50 PFAM
SAM 594 662 1.57e-10 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000122860
SMART Domains Protein: ENSMUSP00000120950
Gene: ENSMUSG00000000085

DomainStartEndE-ValueType
Pfam:DUF3588 60 120 4.3e-9 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.2%
  • 20x: 96.5%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for an allele lacking the SPM domain exhibit partial penetrance of posterior vertebral transformations and male infertility with azoospermia and arrest of spermatogenesis. Mice homozygous for a knock-out allele exhibit abnormal hematopoiesis but normal fertility and skeleton. [provided by MGI curators]
Allele List at MGI

All alleles(67) : Targeted(4) Gene trapped(63)

Other mutations in this stock
Total: 77 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aldh1a1 A G 19: 20,611,807 (GRCm39) N377S probably benign Het
Aldh3b3 A T 19: 4,014,890 (GRCm39) Y129F possibly damaging Het
Ampd2 C A 3: 107,987,432 (GRCm39) V134L probably benign Het
Ankrd61 G A 5: 143,828,237 (GRCm39) S246L possibly damaging Het
Ccdc187 T A 2: 26,170,526 (GRCm39) I651F probably damaging Het
Cdc40 C T 10: 40,717,480 (GRCm39) D404N probably damaging Het
Ceacam13 T A 7: 17,743,934 (GRCm39) S14T probably damaging Het
Cfap58 A T 19: 47,929,553 (GRCm39) K5* probably null Het
Col27a1 T C 4: 63,144,153 (GRCm39) S614P probably benign Het
Crlf3 T A 11: 79,955,100 (GRCm39) E85D probably damaging Het
Dennd2b T A 7: 109,156,279 (GRCm39) H157L probably benign Het
Dlat G T 9: 50,560,967 (GRCm39) A360E probably damaging Het
Dnah7b A G 1: 46,221,624 (GRCm39) I1243V possibly damaging Het
Dnajc22 A G 15: 98,999,345 (GRCm39) T177A probably benign Het
Dytn A T 1: 63,686,606 (GRCm39) C355S probably benign Het
Efcab3 C T 11: 104,749,304 (GRCm39) T2340M possibly damaging Het
Ehbp1 T C 11: 22,119,064 (GRCm39) N202S possibly damaging Het
Exoc3l2 T C 7: 19,215,212 (GRCm39) I491T unknown Het
Fam135a G A 1: 24,067,569 (GRCm39) T1100M probably benign Het
Fam53a A T 5: 33,767,781 (GRCm39) I43N probably damaging Het
Fis1 G T 5: 136,982,365 (GRCm39) probably benign Het
Fn1 T C 1: 71,676,528 (GRCm39) T568A probably benign Het
Gba1 A T 3: 89,115,180 (GRCm39) N404I probably damaging Het
Gsap A G 5: 21,474,949 (GRCm39) Y536C probably benign Het
Hecw2 T A 1: 53,972,330 (GRCm39) E230V probably damaging Het
Heg1 A G 16: 33,555,986 (GRCm39) Q1046R probably benign Het
Kctd14 G A 7: 97,107,445 (GRCm39) W233* probably null Het
Krt88 T C 15: 101,351,460 (GRCm39) S156P possibly damaging Het
L3mbtl1 C A 2: 162,812,137 (GRCm39) H727Q probably benign Het
Man1c1 T C 4: 134,303,295 (GRCm39) K400E probably damaging Het
Map2 A T 1: 66,452,556 (GRCm39) Q482L probably benign Het
Map3k1 A G 13: 111,893,306 (GRCm39) V733A probably damaging Het
Map4k1 G A 7: 28,686,542 (GRCm39) D155N probably damaging Het
Map4k3 G A 17: 80,944,164 (GRCm39) R328C possibly damaging Het
Marchf7 C T 2: 60,067,153 (GRCm39) Q558* probably null Het
Mepe T C 5: 104,485,525 (GRCm39) S222P possibly damaging Het
Mfap3l A T 8: 61,124,958 (GRCm39) N400I possibly damaging Het
Myom3 T C 4: 135,522,509 (GRCm39) probably null Het
Nav3 T C 10: 109,659,311 (GRCm39) T769A probably benign Het
Ndufb7 T A 8: 84,297,518 (GRCm39) Y58N probably damaging Het
Nup160 T C 2: 90,530,463 (GRCm39) F445L probably benign Het
Or1e20-ps1 C A 11: 73,324,848 (GRCm39) *68L probably null Het
Or4c126 T A 2: 89,824,076 (GRCm39) M113K probably damaging Het
Or4p23 T C 2: 88,576,408 (GRCm39) I275V possibly damaging Het
Ovch2 G A 7: 107,389,584 (GRCm39) S321F possibly damaging Het
Pamr1 T C 2: 102,441,924 (GRCm39) L171P probably damaging Het
Pcdhga5 T C 18: 37,828,974 (GRCm39) V474A possibly damaging Het
Pcgf6 A G 19: 47,039,159 (GRCm39) S34P probably benign Het
Pitrm1 C T 13: 6,603,238 (GRCm39) P96L probably damaging Het
Polr1a T C 6: 71,931,755 (GRCm39) F945L probably damaging Het
Ranbp1 A G 16: 18,065,244 (GRCm39) S21P possibly damaging Het
Rasgrp2 G T 19: 6,463,949 (GRCm39) R549L probably damaging Het
Rassf10 T A 7: 112,554,083 (GRCm39) L228Q probably damaging Het
Rho A T 6: 115,912,483 (GRCm39) I275F probably damaging Het
Rrp9 T C 9: 106,361,657 (GRCm39) V400A possibly damaging Het
Satb2 A G 1: 57,008,796 (GRCm39) L62P unknown Het
Scn7a A G 2: 66,510,526 (GRCm39) M1292T probably benign Het
Serpinb10 A T 1: 107,474,542 (GRCm39) T235S probably benign Het
Serpinb6c A G 13: 34,064,702 (GRCm39) V214A probably benign Het
Sf3b3 A G 8: 111,550,816 (GRCm39) I616T possibly damaging Het
Shb G C 4: 45,458,319 (GRCm39) R282G probably benign Het
Snx5 A T 2: 144,103,932 (GRCm39) S22T probably benign Het
Spata6 T C 4: 111,636,476 (GRCm39) F256L probably benign Het
Stab2 T C 10: 86,805,213 (GRCm39) H255R probably benign Het
Sva T A 6: 42,015,357 (GRCm39) M1K probably null Het
Tdpoz4 A T 3: 93,704,221 (GRCm39) T173S probably benign Het
Tex9 T C 9: 72,389,778 (GRCm39) I111V probably benign Het
Tigd4 A G 3: 84,501,874 (GRCm39) I264V probably benign Het
Tmem182 C T 1: 40,877,536 (GRCm39) A137V probably damaging Het
Tnfrsf1a A G 6: 125,338,745 (GRCm39) I385V probably damaging Het
Tnrc18 A T 5: 142,773,202 (GRCm39) F542L Het
Tpbpa G A 13: 61,087,778 (GRCm39) T86I possibly damaging Het
Trappc14 A G 5: 138,261,327 (GRCm39) probably null Het
Ubr5 G A 15: 38,025,039 (GRCm39) P573L Het
Usp54 A G 14: 20,612,176 (GRCm39) I880T probably benign Het
Vmn1r9 A G 6: 57,048,767 (GRCm39) I281V probably benign Het
Zfp456 C A 13: 67,515,373 (GRCm39) C111F possibly damaging Het
Other mutations in Scmh1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01613:Scmh1 APN 4 120,387,097 (GRCm39) utr 3 prime probably benign
IGL01962:Scmh1 APN 4 120,340,781 (GRCm39) splice site probably benign
IGL02013:Scmh1 APN 4 120,340,929 (GRCm39) missense possibly damaging 0.77
IGL02081:Scmh1 APN 4 120,372,275 (GRCm39) missense probably damaging 1.00
IGL02223:Scmh1 APN 4 120,372,416 (GRCm39) missense probably benign 0.26
IGL02530:Scmh1 APN 4 120,385,343 (GRCm39) splice site probably benign
IGL02887:Scmh1 APN 4 120,325,586 (GRCm39) missense probably damaging 1.00
P0024:Scmh1 UTSW 4 120,335,231 (GRCm39) missense probably damaging 1.00
R0164:Scmh1 UTSW 4 120,387,062 (GRCm39) unclassified probably benign
R0164:Scmh1 UTSW 4 120,387,062 (GRCm39) unclassified probably benign
R0200:Scmh1 UTSW 4 120,341,028 (GRCm39) missense probably damaging 0.99
R1598:Scmh1 UTSW 4 120,372,327 (GRCm39) missense possibly damaging 0.83
R1624:Scmh1 UTSW 4 120,386,425 (GRCm39) missense probably damaging 1.00
R2276:Scmh1 UTSW 4 120,340,869 (GRCm39) missense probably damaging 1.00
R3734:Scmh1 UTSW 4 120,335,277 (GRCm39) missense probably damaging 1.00
R4167:Scmh1 UTSW 4 120,386,473 (GRCm39) intron probably benign
R4570:Scmh1 UTSW 4 120,385,495 (GRCm39) missense probably damaging 1.00
R5458:Scmh1 UTSW 4 120,362,478 (GRCm39) unclassified probably benign
R5564:Scmh1 UTSW 4 120,325,575 (GRCm39) missense probably damaging 1.00
R5700:Scmh1 UTSW 4 120,374,143 (GRCm39) missense probably benign 0.10
R5991:Scmh1 UTSW 4 120,379,817 (GRCm39) missense probably benign
R5999:Scmh1 UTSW 4 120,362,712 (GRCm39) critical splice donor site probably null
R7097:Scmh1 UTSW 4 120,382,252 (GRCm39) missense probably benign
R7432:Scmh1 UTSW 4 120,386,353 (GRCm39) missense probably damaging 1.00
R8327:Scmh1 UTSW 4 120,379,699 (GRCm39) missense probably benign
R8680:Scmh1 UTSW 4 120,319,331 (GRCm39) missense probably benign
R9018:Scmh1 UTSW 4 120,362,514 (GRCm39) missense probably benign 0.01
R9141:Scmh1 UTSW 4 120,362,556 (GRCm39) missense probably benign 0.00
R9283:Scmh1 UTSW 4 120,319,337 (GRCm39) missense probably benign
R9426:Scmh1 UTSW 4 120,362,556 (GRCm39) missense probably benign 0.00
R9454:Scmh1 UTSW 4 120,372,276 (GRCm39) missense probably benign
R9487:Scmh1 UTSW 4 120,320,284 (GRCm39) nonsense probably null
R9617:Scmh1 UTSW 4 120,340,827 (GRCm39) missense probably damaging 1.00
R9775:Scmh1 UTSW 4 120,340,820 (GRCm39) missense probably benign
Z1176:Scmh1 UTSW 4 120,335,239 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- TATCCCAGTTCTGAGCCTCTGG -3'
(R):5'- CCTGTACCTCTTTCTGGGAAAC -3'

Sequencing Primer
(F):5'- AGCCCATTTGAGTGGCATC -3'
(R):5'- GGAAACCCACGTTTTTACCTAC -3'
Posted On 2021-03-08