Mutagenetix > Incidental Mutation

Incidental Mutation 'R8768:Lrig1'

664221

Institutional Source

Beutler Lab

Gene Symbol

Lrig1

Ensembl Gene

ENSMUSG00000030029

Gene Name

leucine-rich repeats and immunoglobulin-like domains 1

Synonyms

LIG-1, Img

MMRRC Submission

068623-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8768 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

94581510-94677139 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 94631840 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 120 (V120D)

Ref Sequence

ENSEMBL: ENSMUSP00000032105 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032105] [ENSMUST00000101126] [ENSMUST00000204645]

AlphaFold

P70193

Predicted Effect

possibly damaging
Transcript: ENSMUST00000032105
AA Change: V120D

PolyPhen 2 Score 0.875 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000032105
Gene: ENSMUSG00000030029
AA Change: V120D

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC
LRRNT	42	74	5.82e-6	SMART
LRR	68	92	4.83e0	SMART
LRR	93	115	9.96e-1	SMART
LRR	142	163	6.22e0	SMART
LRR	166	187	1.81e1	SMART
LRR	190	212	5.72e0	SMART
LRR	213	235	1.06e1	SMART
LRR_TYP	236	259	2.79e-4	SMART
LRR	260	283	2.54e1	SMART
LRR	284	307	9.96e-1	SMART
LRR	308	331	4.21e1	SMART
LRR_TYP	332	355	8.6e-5	SMART
LRR	356	382	1.06e1	SMART
LRR	383	406	9.96e-1	SMART
LRR_TYP	407	430	3.34e-2	SMART
LRRCT	442	492	3.5e-15	SMART
IGc2	509	586	1.34e-4	SMART
IGc2	613	681	2.87e-13	SMART
IGc2	707	772	6.44e-16	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000101126
AA Change: V120D

PolyPhen 2 Score 0.875 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000098686
Gene: ENSMUSG00000030029
AA Change: V120D

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC
LRRNT	42	74	5.82e-6	SMART
LRR	68	92	4.83e0	SMART
LRR	93	115	9.96e-1	SMART
LRR	142	163	6.22e0	SMART
LRR	166	187	1.81e1	SMART
LRR	190	212	5.72e0	SMART
LRR	213	235	1.06e1	SMART
LRR_TYP	236	259	2.79e-4	SMART
LRR	260	283	2.54e1	SMART
LRR	284	307	9.96e-1	SMART
LRR	308	331	4.21e1	SMART
LRR_TYP	332	355	8.6e-5	SMART
LRR	356	382	1.06e1	SMART
LRR	383	406	9.96e-1	SMART
LRR_TYP	407	430	3.34e-2	SMART
LRRCT	442	492	3.5e-15	SMART
IGc2	509	586	1.34e-4	SMART
IGc2	613	681	2.87e-13	SMART
IGc2	707	772	6.44e-16	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000204645
AA Change: V120D

PolyPhen 2 Score 0.875 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000144963
Gene: ENSMUSG00000030029
AA Change: V120D

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC
LRRNT	42	74	5.82e-6	SMART
LRR	68	92	4.83e0	SMART
LRR	93	115	9.96e-1	SMART
LRR	142	163	6.22e0	SMART
LRR	166	187	1.81e1	SMART
LRR	190	212	5.72e0	SMART
LRR	213	235	1.06e1	SMART
LRR_TYP	236	259	2.79e-4	SMART
LRR	260	283	2.54e1	SMART
LRR	284	307	9.96e-1	SMART
LRR	308	331	4.21e1	SMART
LRR_TYP	332	355	8.6e-5	SMART
LRR	356	382	1.06e1	SMART
LRR	383	406	9.96e-1	SMART
LRR_TYP	407	430	3.34e-2	SMART
LRRCT	442	492	3.5e-15	SMART
IGc2	509	586	1.34e-4	SMART
IGc2	613	681	2.87e-13	SMART
IGc2	707	772	6.44e-16	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

99% (76/77)

MGI Phenotype

PHENOTYPE: Homozygous null mice developed psoriasiform epidermal hyperplasia. Homozygotes exhibit hair follicle, epidermis, vertebral, eye and hearing abnormalities, decreased body size and fat amount, and increased susceptibility to bacterial infection. [provided by MGI curators]

Allele List at MGI

All alleles(5) : Targeted(4) Gene trapped(1)

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actr1b	A	T	1: 36,740,588 (GRCm39)	C222S	probably benign	Het
Actrt3	T	G	3: 30,651,992 (GRCm39)	R367S	probably damaging	Het
Alg1	T	C	16: 5,060,416 (GRCm39)	V379A	probably damaging	Het
Ankrd36	A	G	11: 5,593,763 (GRCm39)	E456G	probably benign	Het
Arhgef33	G	T	17: 80,681,148 (GRCm39)	A763S	possibly damaging	Het
Armc5	T	G	7: 127,841,783 (GRCm39)	V597G	probably benign	Het
Asb10	G	T	5: 24,738,690 (GRCm39)	R456S	probably damaging	Het
Asph	A	G	4: 9,453,417 (GRCm39)	F702L	probably damaging	Het
Atf7	T	A	15: 102,449,324 (GRCm39)	T326S	probably benign	Het
Atxn7l2	T	C	3: 108,114,250 (GRCm39)	N171D	probably benign	Het
BC049715	T	A	6: 136,816,979 (GRCm39)	M73K	possibly damaging	Het
C2cd6	A	G	1: 59,105,312 (GRCm39)	V322A	probably benign	Het
Cadps2	A	C	6: 23,382,938 (GRCm39)	C807W	probably damaging	Het
Ccdc57	C	T	11: 120,788,788 (GRCm39)	R353H	probably benign	Het
Ccdc89	T	C	7: 90,075,793 (GRCm39)	M1T	probably null	Het
Cntn1	G	A	15: 92,132,347 (GRCm39)	V148M	probably damaging	Het
Csmd3	T	A	15: 47,561,572 (GRCm39)	I1335F		Het
Dap3	A	G	3: 88,834,334 (GRCm39)	M294T	probably damaging	Het
Dbh	A	G	2: 27,060,328 (GRCm39)	D168G	probably benign	Het
Dchs2	C	A	3: 83,253,592 (GRCm39)	A2334E	probably benign	Het
Dcun1d4	T	A	5: 73,678,310 (GRCm39)	Y102N	probably benign	Het
Dhtkd1	T	C	2: 5,903,533 (GRCm39)	T918A	probably benign	Het
Dmgdh	C	T	13: 93,825,118 (GRCm39)	T147I	possibly damaging	Het
Dmxl2	T	G	9: 54,301,105 (GRCm39)	K2335N	possibly damaging	Het
Efna5	T	C	17: 63,188,125 (GRCm39)	M1V	probably null	Het
Fpr-rs3	T	C	17: 20,844,944 (GRCm39)	N66D	probably damaging	Het
Gas2l2	C	A	11: 83,313,999 (GRCm39)	A438S	probably benign	Het
Hivep3	T	C	4: 119,989,521 (GRCm39)	S1991P	probably damaging	Het
Hsp90b1	A	T	10: 86,541,169 (GRCm39)		probably null	Het
Iars1	T	A	13: 49,878,102 (GRCm39)	N875K	probably damaging	Het
Jag1	A	C	2: 136,943,521 (GRCm39)	M225R	possibly damaging	Het
Jag1	T	C	2: 136,932,708 (GRCm39)		probably benign	Het
Kcnn2	C	T	18: 45,692,502 (GRCm39)	S26L	possibly damaging	Het
Kctd2	T	C	11: 115,311,279 (GRCm39)	S96P	probably damaging	Het
Klhl25	A	G	7: 75,516,359 (GRCm39)	N422D	probably damaging	Het
Lhx8	A	T	3: 154,027,886 (GRCm39)	V222E	possibly damaging	Het
Manba	T	A	3: 135,256,995 (GRCm39)	S553T	probably damaging	Het
Mllt10	T	A	2: 18,167,583 (GRCm39)	S503T	probably damaging	Het
Nxpe4	A	G	9: 48,304,050 (GRCm39)	N46D	probably benign	Het
Or1l4b	C	T	2: 37,037,016 (GRCm39)	S264L	probably benign	Het
Or8b50	A	C	9: 38,518,441 (GRCm39)	K227Q	probably benign	Het
Pdzd2	C	T	15: 12,437,252 (GRCm39)	E450K	probably damaging	Het
Phrf1	T	A	7: 140,838,651 (GRCm39)	F615L	unknown	Het
Plch2	C	A	4: 155,083,324 (GRCm39)	G538V	probably damaging	Het
Ppp2r2d	T	A	7: 138,475,897 (GRCm39)	I235N	probably damaging	Het
Prdm15	A	T	16: 97,638,888 (GRCm39)	D57E	probably benign	Het
Psd3	T	C	8: 68,417,003 (GRCm39)	D45G	probably damaging	Het
Ptger4	T	A	15: 5,272,138 (GRCm39)	R185S	probably benign	Het
Ptp4a2	T	A	4: 129,740,299 (GRCm39)	M121K	probably damaging	Het
Ptpre	T	G	7: 135,283,306 (GRCm39)	F659V	possibly damaging	Het
Rad54l2	T	G	9: 106,596,809 (GRCm39)	D199A	probably benign	Het
Rap1gds1	T	C	3: 138,647,521 (GRCm39)	M556V	probably benign	Het
Scaf8	T	C	17: 3,243,349 (GRCm39)	V711A	probably benign	Het
Sesn3	G	A	9: 14,225,964 (GRCm39)	C233Y	probably damaging	Het
Slc45a1	T	A	4: 150,714,206 (GRCm39)	I680F	probably damaging	Het
Slco1a6	C	T	6: 142,078,897 (GRCm39)	V133M	probably benign	Het
Syt6	T	C	3: 103,492,850 (GRCm39)	L119P	probably benign	Het
Szt2	A	C	4: 118,226,613 (GRCm39)	S2974R	unknown	Het
Taok1	A	T	11: 77,444,712 (GRCm39)	H454Q	probably damaging	Het
Tbx10	G	A	19: 4,047,303 (GRCm39)	V136M	probably damaging	Het
Tespa1	A	G	10: 130,198,027 (GRCm39)	T350A	probably benign	Het
Tnks1bp1	T	A	2: 84,900,980 (GRCm39)	Y1562*	probably null	Het
Trank1	T	A	9: 111,218,344 (GRCm39)	F1908Y	probably benign	Het
Trav6d-4	A	T	14: 52,991,243 (GRCm39)	H96L	possibly damaging	Het
Tspoap1	T	C	11: 87,669,197 (GRCm39)	I1490T	probably benign	Het
Ttc21a	T	C	9: 119,770,286 (GRCm39)	F119S	probably damaging	Het
Ttll3	T	G	6: 113,385,949 (GRCm39)	M594R	probably damaging	Het
Ttn	T	A	2: 76,798,790 (GRCm39)	R495*	probably null	Het
Twf1	A	C	15: 94,479,110 (GRCm39)	L250V	probably damaging	Het
Ubr4	A	T	4: 139,149,076 (GRCm39)	E458D		Het
Unc50	T	C	1: 37,476,244 (GRCm39)	F135L	probably benign	Het
Vwa3a	T	A	7: 120,375,299 (GRCm39)	I371N	probably damaging	Het
Zfp180	T	C	7: 23,805,161 (GRCm39)	S527P	probably damaging	Het
Zfp512	T	A	5: 31,630,882 (GRCm39)	I408N	probably damaging	Het
Zfp57	A	G	17: 37,317,077 (GRCm39)	T52A	probably benign	Het
Zranb2	A	G	3: 157,247,327 (GRCm39)		probably benign	Het

Other mutations in Lrig1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00474:Lrig1	APN	6	94,588,385 (GRCm39)	missense	probably damaging	0.99
IGL01356:Lrig1	APN	6	94,586,874 (GRCm39)	missense	probably damaging	1.00
IGL01356:Lrig1	APN	6	94,631,901 (GRCm39)	missense	probably benign	0.00
IGL02001:Lrig1	APN	6	94,584,305 (GRCm39)	missense	probably benign	0.00
IGL02019:Lrig1	APN	6	94,593,410 (GRCm39)	missense	probably damaging	0.98
IGL02177:Lrig1	APN	6	94,640,977 (GRCm39)	missense	possibly damaging	0.76
IGL02274:Lrig1	APN	6	94,640,919 (GRCm39)	missense	possibly damaging	0.90
IGL03197:Lrig1	APN	6	94,583,099 (GRCm39)	missense	probably benign
IGL03263:Lrig1	APN	6	94,588,628 (GRCm39)	missense	probably benign	0.00
IGL03327:Lrig1	APN	6	94,583,104 (GRCm39)	missense	probably benign	0.10
N/A - 293:Lrig1	UTSW	6	94,586,068 (GRCm39)	missense	probably benign
R0019:Lrig1	UTSW	6	94,584,330 (GRCm39)	nonsense	probably null
R0019:Lrig1	UTSW	6	94,584,330 (GRCm39)	nonsense	probably null
R0961:Lrig1	UTSW	6	94,640,895 (GRCm39)	splice site	probably benign
R1018:Lrig1	UTSW	6	94,599,583 (GRCm39)	splice site	probably benign
R1381:Lrig1	UTSW	6	94,583,111 (GRCm39)	missense	probably benign	0.04
R1473:Lrig1	UTSW	6	94,584,294 (GRCm39)	missense	probably benign	0.16
R1498:Lrig1	UTSW	6	94,604,968 (GRCm39)	missense	possibly damaging	0.89
R1888:Lrig1	UTSW	6	94,631,859 (GRCm39)	missense	probably benign	0.03
R1888:Lrig1	UTSW	6	94,631,859 (GRCm39)	missense	probably benign	0.03
R2273:Lrig1	UTSW	6	94,585,124 (GRCm39)	missense	probably damaging	1.00
R2513:Lrig1	UTSW	6	94,594,347 (GRCm39)	splice site	probably null
R3001:Lrig1	UTSW	6	94,585,758 (GRCm39)	missense	probably damaging	1.00
R3002:Lrig1	UTSW	6	94,585,758 (GRCm39)	missense	probably damaging	1.00
R3732:Lrig1	UTSW	6	94,588,557 (GRCm39)	missense	possibly damaging	0.86
R3732:Lrig1	UTSW	6	94,588,557 (GRCm39)	missense	possibly damaging	0.86
R3733:Lrig1	UTSW	6	94,588,557 (GRCm39)	missense	possibly damaging	0.86
R3772:Lrig1	UTSW	6	94,582,798 (GRCm39)	missense	probably benign	0.00
R4089:Lrig1	UTSW	6	94,586,840 (GRCm39)	missense	possibly damaging	0.83
R4093:Lrig1	UTSW	6	94,590,559 (GRCm39)	missense	probably benign	0.10
R4095:Lrig1	UTSW	6	94,590,559 (GRCm39)	missense	probably benign	0.10
R4225:Lrig1	UTSW	6	94,599,639 (GRCm39)	missense	probably damaging	1.00
R4917:Lrig1	UTSW	6	94,586,700 (GRCm39)	missense	probably damaging	1.00
R4951:Lrig1	UTSW	6	94,640,959 (GRCm39)	missense	probably damaging	1.00
R4976:Lrig1	UTSW	6	94,602,043 (GRCm39)	missense	probably damaging	1.00
R5000:Lrig1	UTSW	6	94,588,430 (GRCm39)	missense	probably damaging	1.00
R5149:Lrig1	UTSW	6	94,605,025 (GRCm39)	missense	possibly damaging	0.93
R5732:Lrig1	UTSW	6	94,676,520 (GRCm39)	nonsense	probably null
R5988:Lrig1	UTSW	6	94,605,023 (GRCm39)	missense	probably damaging	0.99
R6064:Lrig1	UTSW	6	94,603,428 (GRCm39)	missense	probably damaging	1.00
R6292:Lrig1	UTSW	6	94,593,426 (GRCm39)	missense	probably damaging	1.00
R6723:Lrig1	UTSW	6	94,603,386 (GRCm39)	missense	probably damaging	1.00
R6815:Lrig1	UTSW	6	94,602,010 (GRCm39)	missense	probably damaging	1.00
R6889:Lrig1	UTSW	6	94,602,044 (GRCm39)	missense	probably benign	0.07
R6995:Lrig1	UTSW	6	94,588,610 (GRCm39)	missense	possibly damaging	0.95
R7404:Lrig1	UTSW	6	94,603,452 (GRCm39)	missense	probably damaging	1.00
R7487:Lrig1	UTSW	6	94,583,099 (GRCm39)	missense	probably benign
R7732:Lrig1	UTSW	6	94,603,358 (GRCm39)	missense	probably benign	0.05
R7915:Lrig1	UTSW	6	94,607,082 (GRCm39)	critical splice donor site	probably null
R8133:Lrig1	UTSW	6	94,588,610 (GRCm39)	missense	possibly damaging	0.95
R9045:Lrig1	UTSW	6	94,585,688 (GRCm39)	critical splice donor site	probably null
R9227:Lrig1	UTSW	6	94,607,113 (GRCm39)	missense	probably damaging	1.00
Z1176:Lrig1	UTSW	6	94,586,007 (GRCm39)	missense	possibly damaging	0.50

Predicted Primers

PCR Primer
(F):5'- GCAAAGGATTTGTTCTGTGTACC -3'
(R):5'- GCCTGACTATGGCTAACTACAG -3'

Sequencing Primer
(F):5'- GTTTTCCCCATTAGAAATGCAGC -3'
(R):5'- CTGACTATGGCTAACTACAGCGTTG -3'

Posted On

2021-03-08