Mutagenetix > Incidental Mutation

Incidental Mutation 'R8774-TAIL:Ncbp3'

667983

Institutional Source

Beutler Lab

Gene Symbol

Ncbp3

Ensembl Gene

ENSMUSG00000020783

Gene Name

nuclear cap binding subunit 3

Synonyms

1200014J11Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.236) question?

Stock #

R8774-TAIL

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

72937443-72974405 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 72938808 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 28 (V28A)

Ref Sequence

ENSEMBL: ENSMUSP00000021135 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021135]

AlphaFold

Q8BZR9

Predicted Effect

probably benign
Transcript: ENSMUST00000021135
AA Change: V28A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000021135
Gene: ENSMUSG00000020783
AA Change: V28A

Domain	Start	End	E-Value	Type
low complexity region	13	27	N/A	INTRINSIC
low complexity region	33	52	N/A	INTRINSIC
Pfam:DUF2414	123	177	4.5e-24	PFAM
low complexity region	191	231	N/A	INTRINSIC
coiled coil region	345	364	N/A	INTRINSIC
low complexity region	379	403	N/A	INTRINSIC
low complexity region	581	592	N/A	INTRINSIC
low complexity region	602	615	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca1	A	G	4: 53,090,358 (GRCm39)	S364P	possibly damaging	Het
Abcc2	T	A	19: 43,787,577 (GRCm39)	Y208N	probably damaging	Het
Acy1	A	T	9: 106,313,913 (GRCm39)	D82E	probably damaging	Het
Ankub1	A	G	3: 57,597,802 (GRCm39)	L56P	probably damaging	Het
Aoc1	T	A	6: 48,885,529 (GRCm39)	F678Y	probably damaging	Het
Asxl3	C	A	18: 22,657,101 (GRCm39)	Q1704K	probably damaging	Het
Atg9b	T	C	5: 24,595,571 (GRCm39)	D236G	probably damaging	Het
Auh	A	T	13: 52,993,631 (GRCm39)	M261K	probably benign	Het
Blm	TCC	TCCGCC	7: 80,162,655 (GRCm39)		probably benign	Het
Blm	TCC	TCCGCC	7: 80,162,667 (GRCm39)		probably benign	Het
Blm	CTC	CTCATC	7: 80,162,666 (GRCm39)		probably benign	Het
C2cd6	A	T	1: 59,099,825 (GRCm39)	M372K	possibly damaging	Het
Ccdc88b	A	T	19: 6,825,090 (GRCm39)	N1287K	probably damaging	Het
Cebpz	A	G	17: 79,229,073 (GRCm39)	S958P	probably benign	Het
Cgn	T	A	3: 94,680,810 (GRCm39)	Q576L	probably damaging	Het
Chd7	T	A	4: 8,854,692 (GRCm39)	M2011K	probably damaging	Het
Cntnap4	A	G	8: 113,529,820 (GRCm39)	E676G	probably benign	Het
Cspp1	A	T	1: 10,183,139 (GRCm39)	E781D	possibly damaging	Het
Cyb5d2	A	C	11: 72,679,901 (GRCm39)		probably null	Het
Epn3	G	T	11: 94,383,220 (GRCm39)	P335T	possibly damaging	Het
Far2	T	A	6: 148,047,629 (GRCm39)	S103T	probably benign	Het
Fhip1a	G	C	3: 85,580,097 (GRCm39)	Q703E	probably benign	Het
Fhl2	A	G	1: 43,162,751 (GRCm39)	S255P	probably damaging	Het
Fmnl2	T	A	2: 52,932,321 (GRCm39)	V100D		Het
Gabbr1	T	C	17: 37,382,749 (GRCm39)	L814P	probably damaging	Het
Gzmg	C	T	14: 56,394,193 (GRCm39)	V234I	probably benign	Het
Ift172	A	G	5: 31,415,207 (GRCm39)	V1334A	probably benign	Het
Itga8	C	G	2: 12,187,495 (GRCm39)	G728A	probably damaging	Het
Klrg1	T	C	6: 122,255,193 (GRCm39)	T80A	probably benign	Het
Lrp4	A	G	2: 91,308,043 (GRCm39)	N496S	probably benign	Het
Lsmem1	G	T	12: 40,227,145 (GRCm39)	N113K	probably damaging	Het
Map3k2	G	A	18: 32,345,117 (GRCm39)	S314N	probably damaging	Het
Mtpap	C	T	18: 4,387,032 (GRCm39)	R361*	probably null	Het
Muc5b	T	A	7: 141,418,831 (GRCm39)	S3926T	probably benign	Het
Nat10	C	A	2: 103,561,752 (GRCm39)	R643L	probably damaging	Het
Nlrp9a	T	C	7: 26,257,984 (GRCm39)	L534P	possibly damaging	Het
Nmi	T	C	2: 51,848,974 (GRCm39)	K39E	probably benign	Het
Nxpe4	A	G	9: 48,304,692 (GRCm39)	N260D	probably benign	Het
Or4k38	T	C	2: 111,166,318 (GRCm39)	Y35C	probably damaging	Het
Or51aa2	C	A	7: 103,187,965 (GRCm39)	V159L	probably benign	Het
Or6c213	T	A	10: 129,573,926 (GRCm39)	I287F	probably damaging	Het
Or8c19-ps1	G	A	9: 38,220,600 (GRCm39)	A170T	unknown	Het
Pirb	G	T	7: 3,720,728 (GRCm39)	L257M	probably damaging	Het
Plcg2	A	T	8: 118,306,585 (GRCm39)	D313V	possibly damaging	Het
Ppard	G	A	17: 28,517,864 (GRCm39)	V311I	possibly damaging	Het
Ptcd1	A	T	5: 145,092,175 (GRCm39)	M308K	probably damaging	Het
Pygo1	A	G	9: 72,852,436 (GRCm39)	N208D	possibly damaging	Het
Robo1	T	G	16: 72,832,719 (GRCm39)	D1497E	probably benign	Het
Sdk2	T	C	11: 113,730,169 (GRCm39)	D1022G	probably damaging	Het
Shc3	G	A	13: 51,615,475 (GRCm39)	H161Y	probably damaging	Het
Slc15a1	G	T	14: 121,724,423 (GRCm39)	Q150K	probably damaging	Het
Sod1	T	G	16: 90,023,039 (GRCm39)	V120G	probably damaging	Het
Spata31g1	T	C	4: 42,971,087 (GRCm39)	L140P	probably damaging	Het
Sprr2f	T	A	3: 92,273,323 (GRCm39)	C41S	unknown	Het
Svil	A	T	18: 5,049,068 (GRCm39)	Y115F	probably damaging	Het
Tdp1	T	C	12: 99,877,917 (GRCm39)	S400P	probably damaging	Het
Thbs4	A	T	13: 92,898,030 (GRCm39)	D596E	probably damaging	Het
Tshz1	T	A	18: 84,033,101 (GRCm39)	M436L	possibly damaging	Het
Ube3c	C	T	5: 29,812,029 (GRCm39)	T423I	probably benign	Het
Unc93a	A	T	17: 13,341,837 (GRCm39)	I98N	probably damaging	Het
Usp33	T	A	3: 152,085,213 (GRCm39)	Y624*	probably null	Het
Vmn1r217	T	A	13: 23,298,108 (GRCm39)	M265L	probably benign	Het
Vmn1r222	A	T	13: 23,416,418 (GRCm39)	M265K	probably benign	Het
Vmn2r16	C	T	5: 109,488,231 (GRCm39)	T368M	probably benign	Het
Zfp867	A	G	11: 59,354,837 (GRCm39)	F164S	probably damaging	Het
Zswim1	C	T	2: 164,668,062 (GRCm39)	T438I	probably benign	Het

Other mutations in Ncbp3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Ncbp3	APN	11	72,964,355 (GRCm39)	splice site	probably benign
R0180:Ncbp3	UTSW	11	72,955,804 (GRCm39)	splice site	probably null
R0464:Ncbp3	UTSW	11	72,960,647 (GRCm39)	splice site	probably benign
R0620:Ncbp3	UTSW	11	72,940,671 (GRCm39)	splice site	probably benign
R2024:Ncbp3	UTSW	11	72,944,346 (GRCm39)	missense	possibly damaging	0.95
R2121:Ncbp3	UTSW	11	72,944,304 (GRCm39)	missense	possibly damaging	0.56
R4610:Ncbp3	UTSW	11	72,969,844 (GRCm39)	missense	probably damaging	0.98
R4693:Ncbp3	UTSW	11	72,966,503 (GRCm39)	missense	probably benign	0.00
R4883:Ncbp3	UTSW	11	72,960,578 (GRCm39)	missense	probably damaging	0.99
R4974:Ncbp3	UTSW	11	72,944,355 (GRCm39)	critical splice donor site	probably null
R5212:Ncbp3	UTSW	11	72,944,373 (GRCm39)	intron	probably benign
R5740:Ncbp3	UTSW	11	72,944,323 (GRCm39)	missense	possibly damaging	0.88
R5906:Ncbp3	UTSW	11	72,964,327 (GRCm39)	missense	probably benign	0.04
R6026:Ncbp3	UTSW	11	72,958,548 (GRCm39)	missense	probably benign	0.00
R6154:Ncbp3	UTSW	11	72,940,700 (GRCm39)	missense	probably damaging	1.00
R6403:Ncbp3	UTSW	11	72,969,802 (GRCm39)	missense	probably benign	0.00
R6626:Ncbp3	UTSW	11	72,964,210 (GRCm39)	missense	possibly damaging	0.88
R6838:Ncbp3	UTSW	11	72,964,300 (GRCm39)	missense	possibly damaging	0.89
R7155:Ncbp3	UTSW	11	72,938,835 (GRCm39)	missense	probably damaging	0.99
R7369:Ncbp3	UTSW	11	72,968,747 (GRCm39)	missense	probably benign	0.00
R7587:Ncbp3	UTSW	11	72,957,591 (GRCm39)	splice site	probably null
R7657:Ncbp3	UTSW	11	72,964,193 (GRCm39)	missense	probably damaging	1.00
R8774:Ncbp3	UTSW	11	72,938,808 (GRCm39)	missense	probably benign
R9063:Ncbp3	UTSW	11	72,964,253 (GRCm39)	missense	probably damaging	1.00
R9478:Ncbp3	UTSW	11	72,968,768 (GRCm39)	missense	probably damaging	0.99
R9513:Ncbp3	UTSW	11	72,938,727 (GRCm39)	start codon destroyed	probably null	0.95
R9670:Ncbp3	UTSW	11	72,944,323 (GRCm39)	missense	possibly damaging	0.88
R9762:Ncbp3	UTSW	11	72,961,668 (GRCm39)	missense	probably benign	0.35
Y5379:Ncbp3	UTSW	11	72,964,086 (GRCm39)	small deletion	probably benign
Z1177:Ncbp3	UTSW	11	72,938,794 (GRCm39)	frame shift	probably null

Predicted Primers

Posted On

2021-03-08