Mutagenetix > Incidental Mutation

Incidental Mutation 'R8695:Pglyrp3'

668599

Institutional Source

Beutler Lab

Gene Symbol

Pglyrp3

Ensembl Gene

ENSMUSG00000042244

Gene Name

peptidoglycan recognition protein 3

Synonyms

LOC242100

MMRRC Submission

068549-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.078) question?

Stock #

R8695 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

91921890-91938889 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 91933762 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Cysteine at position 136 (S136C)

Ref Sequence

ENSEMBL: ENSMUSP00000035737 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047660]

AlphaFold

A1A547

Predicted Effect

probably null
Transcript: ENSMUST00000047660
AA Change: S136C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000035737
Gene: ENSMUSG00000042244
AA Change: S136C

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC
PGRP	28	169	2.64e-45	SMART
Ami_2	39	169	1.06e-2	SMART
PGRP	185	326	3.23e-72	SMART
Ami_2	195	332	1.75e-17	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.5%

Validation Efficiency

100% (78/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a peptidoglycan recognition protein, which belongs to the N-acetylmuramoyl-L-alanine amidase 2 family. These proteins are part of the innate immune system and recognize peptidoglycan, a ubiquitous component of bacterial cell walls. This antimicrobial protein binds to murein peptidoglycans of Gram-positive bacteria. [provided by RefSeq, Oct 2014]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased susceptibility to DSS-induced colitis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921524J17Rik	A	G	8: 86,138,870 (GRCm39)	I73T	probably benign	Het
4930556J24Rik	A	G	11: 3,926,192 (GRCm39)		probably benign	Het
Ace	A	G	11: 105,875,971 (GRCm39)	T1010A	probably benign	Het
Adam20	A	T	8: 41,248,865 (GRCm39)	Y325F	probably benign	Het
Aff4	A	C	11: 53,259,509 (GRCm39)	N7H	probably damaging	Het
Apob	A	T	12: 8,057,830 (GRCm39)	D2104V	probably damaging	Het
Asap3	T	C	4: 135,965,722 (GRCm39)	S411P	probably benign	Het
Atxn1l	C	T	8: 110,458,462 (GRCm39)	G600D	probably damaging	Het
Brd3	A	T	2: 27,352,558 (GRCm39)	M124K	probably benign	Het
Bsx	A	G	9: 40,785,484 (GRCm39)	N4S	probably damaging	Het
Ccdc125	T	C	13: 100,814,552 (GRCm39)	I44T	probably benign	Het
Ccdc141	G	A	2: 76,879,963 (GRCm39)	T620I	probably benign	Het
Ccdc178	T	A	18: 22,157,809 (GRCm39)	I550F	probably benign	Het
Ccdc77	G	T	6: 120,318,962 (GRCm39)	T163N	probably damaging	Het
Cd55	A	T	1: 130,380,273 (GRCm39)	I235K	probably benign	Het
Cdc123	A	T	2: 5,826,174 (GRCm39)	M118K	possibly damaging	Het
Cep192	A	T	18: 67,951,958 (GRCm39)	K378*	probably null	Het
Chd7	C	T	4: 8,850,812 (GRCm39)	R1733C	probably damaging	Het
Crybg2	A	T	4: 133,792,766 (GRCm39)	S134C	possibly damaging	Het
Cyp2d26	A	G	15: 82,676,907 (GRCm39)		probably benign	Het
D430041D05Rik	A	G	2: 104,085,299 (GRCm39)		probably null	Het
Dyrk2	A	T	10: 118,696,922 (GRCm39)	V112E	probably benign	Het
Eppk1	A	G	15: 75,994,598 (GRCm39)	L761P	probably benign	Het
Evpl	T	C	11: 116,114,489 (GRCm39)	K1067R	probably benign	Het
Fancm	C	A	12: 65,171,947 (GRCm39)	D1862E	probably damaging	Het
Fhl2	A	G	1: 43,167,571 (GRCm39)	V174A	probably damaging	Het
Gemin4	A	T	11: 76,102,656 (GRCm39)	C702S	probably damaging	Het
Ggnbp2	T	A	11: 84,760,767 (GRCm39)	D10V	possibly damaging	Het
Glul	T	C	1: 153,778,769 (GRCm39)	V26A	probably benign	Het
Gml2	A	G	15: 74,696,089 (GRCm39)	N161S	probably benign	Het
Gnao1	C	A	8: 94,682,795 (GRCm39)	T327K	probably damaging	Het
Gpr179	A	G	11: 97,227,124 (GRCm39)	V1677A	possibly damaging	Het
Greb1l	A	T	18: 10,544,450 (GRCm39)	H1348L	probably benign	Het
Grm8	T	C	6: 28,126,030 (GRCm39)	H32R	probably benign	Het
Hk2	T	A	6: 82,716,627 (GRCm39)	M302L	probably benign	Het
Hnrnpm	C	A	17: 33,877,884 (GRCm39)	M333I	probably benign	Het
Hsd3b1	A	G	3: 98,760,223 (GRCm39)	I256T	probably damaging	Het
Irx5	G	A	8: 93,087,327 (GRCm39)	G420R	probably damaging	Het
Krt87	A	G	15: 101,331,901 (GRCm39)	V279A	probably benign	Het
Lamb2	G	A	9: 108,363,365 (GRCm39)	S848N	probably benign	Het
Lypd10	A	T	7: 24,413,203 (GRCm39)	H174L	probably benign	Het
Mc1r	A	T	8: 124,135,116 (GRCm39)	T290S	probably benign	Het
Or10d4	A	T	9: 39,580,376 (GRCm39)	T8S	probably benign	Het
Or52n2c	A	T	7: 104,574,146 (GRCm39)	V275D	probably benign	Het
Or52z1	A	T	7: 103,436,729 (GRCm39)	C252S	possibly damaging	Het
Or6c202	T	A	10: 128,996,233 (GRCm39)	T207S	probably damaging	Het
Pex6	T	C	17: 47,022,975 (GRCm39)	S184P	probably damaging	Het
Pik3r1	A	G	13: 101,894,062 (GRCm39)	S36P	probably benign	Het
Pomt2	G	T	12: 87,156,790 (GRCm39)	T782K	probably benign	Het
Ppfibp2	A	G	7: 107,285,063 (GRCm39)		probably benign	Het
Prdm9	T	C	17: 15,765,019 (GRCm39)	H587R	probably damaging	Het
Prp2	A	G	6: 132,576,932 (GRCm39)	Q73R	unknown	Het
Psmb4	T	C	3: 94,793,435 (GRCm39)	N149D	probably benign	Het
Ptprj	A	T	2: 90,301,481 (GRCm39)	I217N	possibly damaging	Het
Rasal3	A	G	17: 32,611,736 (GRCm39)	F797S	possibly damaging	Het
Rsrp1	T	A	4: 134,652,610 (GRCm39)	M188K	probably damaging	Het
Senp8	A	G	9: 59,644,499 (GRCm39)	I219T	probably damaging	Het
Serpinb10	A	T	1: 107,468,630 (GRCm39)	N91I	probably damaging	Het
Skint4	C	T	4: 111,975,264 (GRCm39)	R75C	probably damaging	Het
Slc25a48	C	A	13: 56,612,825 (GRCm39)	A241E	probably damaging	Het
Slc39a6	C	A	18: 24,736,811 (GRCm39)		probably benign	Het
Smarcc1	G	A	9: 110,002,972 (GRCm39)	R354H	probably damaging	Het
Spata21	G	C	4: 140,838,755 (GRCm39)		probably null	Het
Sptbn2	A	G	19: 4,796,724 (GRCm39)	E1774G	possibly damaging	Het
Tep1	A	T	14: 51,082,894 (GRCm39)	F1038Y	possibly damaging	Het
Thbs2	T	A	17: 14,899,963 (GRCm39)	D638V	probably benign	Het
Tmem161a	G	T	8: 70,627,047 (GRCm39)	C33F	probably damaging	Het
Trim47	T	C	11: 116,000,926 (GRCm39)	S41G	probably benign	Het
Trim56	T	A	5: 137,143,429 (GRCm39)	H29L	probably benign	Het
Ugt2b35	T	A	5: 87,156,064 (GRCm39)	H385Q	probably damaging	Het
Ugt2b37	T	A	5: 87,390,243 (GRCm39)	H401L	probably benign	Het
Usp44	A	C	10: 93,682,365 (GRCm39)	T272P	probably damaging	Het
Usp46	C	T	5: 74,189,897 (GRCm39)	E156K	probably benign	Het
Vmn1r232	T	C	17: 21,134,109 (GRCm39)	K164E	probably benign	Het
Zan	T	A	5: 137,385,217 (GRCm39)	N5072I	unknown	Het
Zfp318	T	C	17: 46,723,576 (GRCm39)	S1860P	probably benign	Het
Zfp616	C	T	11: 73,975,710 (GRCm39)	R660W	probably benign	Het
Zfp870	C	T	17: 33,102,679 (GRCm39)	V217I	possibly damaging	Het

Other mutations in Pglyrp3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00335:Pglyrp3	APN	3	91,929,986 (GRCm39)	missense	probably damaging	0.96
IGL00769:Pglyrp3	APN	3	91,921,929 (GRCm39)	utr 5 prime	probably benign
IGL02491:Pglyrp3	APN	3	91,921,944 (GRCm39)	missense	possibly damaging	0.77
IGL03279:Pglyrp3	APN	3	91,933,834 (GRCm39)	missense	probably damaging	1.00
R0056:Pglyrp3	UTSW	3	91,933,111 (GRCm39)	splice site	probably benign
R1128:Pglyrp3	UTSW	3	91,935,479 (GRCm39)	missense	probably benign	0.22
R2097:Pglyrp3	UTSW	3	91,935,478 (GRCm39)	missense	possibly damaging	0.91
R2140:Pglyrp3	UTSW	3	91,933,874 (GRCm39)	missense	probably benign	0.00
R3697:Pglyrp3	UTSW	3	91,935,481 (GRCm39)	missense	probably damaging	1.00
R4369:Pglyrp3	UTSW	3	91,935,386 (GRCm39)	missense	probably damaging	1.00
R4430:Pglyrp3	UTSW	3	91,938,798 (GRCm39)	missense	probably damaging	1.00
R4775:Pglyrp3	UTSW	3	91,933,037 (GRCm39)	missense	possibly damaging	0.64
R6020:Pglyrp3	UTSW	3	91,938,841 (GRCm39)	missense	probably damaging	1.00
R7352:Pglyrp3	UTSW	3	91,921,947 (GRCm39)	nonsense	probably null
R7437:Pglyrp3	UTSW	3	91,937,985 (GRCm39)	missense	probably benign	0.00
R8150:Pglyrp3	UTSW	3	91,933,790 (GRCm39)	missense	probably benign	0.00
R8466:Pglyrp3	UTSW	3	91,921,941 (GRCm39)	missense	probably benign	0.16
R9413:Pglyrp3	UTSW	3	91,930,106 (GRCm39)	missense	probably damaging	1.00
R9479:Pglyrp3	UTSW	3	91,935,310 (GRCm39)	missense	probably benign	0.04
R9592:Pglyrp3	UTSW	3	91,938,859 (GRCm39)	missense	probably benign	0.22
R9722:Pglyrp3	UTSW	3	91,938,695 (GRCm39)	missense	possibly damaging	0.67
Z1176:Pglyrp3	UTSW	3	91,935,392 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTCTGTGTTTGGCCCTTACAAG -3'
(R):5'- ATCTCCAAATATAGCTGGGAGTG -3'

Sequencing Primer
(F):5'- GGCCCTTACAAGATGTTCCTAATTG -3'
(R):5'- ATATAGCTGGGAGTGATGTAATGC -3'

Posted On

2021-04-30