Incidental Mutation 'R8698:Carmil1'
ID 668866
Institutional Source Beutler Lab
Gene Symbol Carmil1
Ensembl Gene ENSMUSG00000021338
Gene Name capping protein regulator and myosin 1 linker 1
Synonyms Carmil, Lrrc16a, 1110037D04Rik, Lrrc16
MMRRC Submission 068552-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R8698 (G1)
Quality Score 225.009
Status Not validated
Chromosome 13
Chromosomal Location 24196327-24464778 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 24220229 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glycine to Aspartic acid at position 1165 (G1165D)
Ref Sequence ENSEMBL: ENSMUSP00000072662 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072889] [ENSMUST00000110398] [ENSMUST00000125901]
AlphaFold Q6EDY6
PDB Structure Solution structure of the CARMIL CAH3a/b domain bound to capping protein (CP) [SOLUTION NMR]
Crystal structure of Actin Capping Protein in complex with the Cp-binding motif derived from CARMIL [X-RAY DIFFRACTION]
Crystal structure of Actin capping protein in complex with CARMIL fragment [X-RAY DIFFRACTION]
Crystal Structure of mouse CARMIL residues 1-668 [X-RAY DIFFRACTION]
Predicted Effect probably damaging
Transcript: ENSMUST00000072889
AA Change: G1165D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000072662
Gene: ENSMUSG00000021338
AA Change: G1165D

DomainStartEndE-ValueType
low complexity region 19 37 N/A INTRINSIC
LRR 245 272 2.42e1 SMART
LRR 275 302 1.04e1 SMART
LRR 304 331 3.1e0 SMART
LRR 336 363 5.66e1 SMART
Blast:LRR 423 450 9e-8 BLAST
Blast:LRR 451 484 7e-9 BLAST
LRR 574 601 8.81e-2 SMART
Blast:LRR 602 629 6e-10 BLAST
low complexity region 745 758 N/A INTRINSIC
Pfam:CARMIL_C 790 1083 1.1e-101 PFAM
low complexity region 1131 1147 N/A INTRINSIC
low complexity region 1245 1251 N/A INTRINSIC
low complexity region 1253 1268 N/A INTRINSIC
low complexity region 1287 1296 N/A INTRINSIC
low complexity region 1317 1332 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000110398
AA Change: G1161D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000106028
Gene: ENSMUSG00000021338
AA Change: G1161D

DomainStartEndE-ValueType
low complexity region 19 37 N/A INTRINSIC
LRR 245 272 2.42e1 SMART
LRR 275 302 1.04e1 SMART
LRR 304 331 3.1e0 SMART
LRR 336 363 5.66e1 SMART
Blast:LRR 423 450 9e-8 BLAST
LRR 451 480 3.15e1 SMART
Pfam:LRR_6 481 507 1.9e-2 PFAM
LRR 570 597 8.81e-2 SMART
Blast:LRR 598 625 6e-10 BLAST
low complexity region 741 754 N/A INTRINSIC
low complexity region 879 888 N/A INTRINSIC
PDB:3LK3|T 964 1076 1e-56 PDB
low complexity region 1127 1143 N/A INTRINSIC
low complexity region 1241 1247 N/A INTRINSIC
low complexity region 1249 1264 N/A INTRINSIC
low complexity region 1283 1292 N/A INTRINSIC
low complexity region 1313 1325 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000125901
AA Change: G761D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000126522
Gene: ENSMUSG00000021338
AA Change: G761D

DomainStartEndE-ValueType
Blast:LRR 13 40 5e-8 BLAST
Blast:LRR 41 74 4e-9 BLAST
Pfam:LRR_6 75 101 4.4e-2 PFAM
Pfam:LRR_6 164 187 1.6e-3 PFAM
Blast:LRR 192 219 7e-10 BLAST
low complexity region 335 348 N/A INTRINSIC
low complexity region 473 482 N/A INTRINSIC
PDB:3LK3|T 564 676 4e-57 PDB
low complexity region 727 743 N/A INTRINSIC
low complexity region 841 847 N/A INTRINSIC
low complexity region 849 864 N/A INTRINSIC
low complexity region 883 892 N/A INTRINSIC
low complexity region 913 925 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.3%
Validation Efficiency
MGI Phenotype PHENOTYPE: No abnormal phenotype was observed in a high-throughput screen, nor in a pathology assessment. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 86 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aaas A G 15: 102,247,250 (GRCm39) probably benign Het
Adamtsl1 A G 4: 86,306,714 (GRCm39) N1384S probably benign Het
Adgre1 T C 17: 57,709,003 (GRCm39) S65P probably benign Het
Adgrl4 G T 3: 151,203,512 (GRCm39) C124F probably damaging Het
Aldh1b1 G A 4: 45,802,942 (GRCm39) G160D probably damaging Het
Alpi T G 1: 87,028,208 (GRCm39) D205A probably damaging Het
AW146154 C A 7: 41,129,934 (GRCm39) R394L probably benign Het
Bcl10 G A 3: 145,639,022 (GRCm39) M221I probably benign Het
Brpf3 G A 17: 29,037,436 (GRCm39) R768H probably damaging Het
Cad G T 5: 31,234,819 (GRCm39) R2116L probably benign Het
Cand2 G T 6: 115,763,852 (GRCm39) R258L probably damaging Het
Car4 A T 11: 84,855,009 (GRCm39) N119I probably benign Het
Ccdc66 T C 14: 27,212,647 (GRCm39) T403A probably benign Het
Cdon T G 9: 35,398,269 (GRCm39) probably null Het
Cemip T C 7: 83,607,790 (GRCm39) I739V probably damaging Het
Cep85l A G 10: 53,234,201 (GRCm39) I59T probably damaging Het
Clec4f A T 6: 83,630,267 (GRCm39) V97D probably benign Het
Cnot6l A G 5: 96,225,149 (GRCm39) C515R probably damaging Het
Cntnap2 G A 6: 47,026,156 (GRCm39) G935D probably damaging Het
Cntrl A G 2: 35,023,974 (GRCm39) H553R probably damaging Het
Cops3 A G 11: 59,708,886 (GRCm39) S423P probably damaging Het
Cox15 C T 19: 43,739,948 (GRCm39) R39H probably benign Het
Ctnna2 A G 6: 77,630,100 (GRCm39) V131A probably benign Het
Dcst2 T A 3: 89,276,044 (GRCm39) F392I probably benign Het
Decr1 A G 4: 15,922,483 (GRCm39) probably null Het
Dennd3 A C 15: 73,394,154 (GRCm39) T60P possibly damaging Het
Dipk1a A T 5: 108,057,776 (GRCm39) F261I probably damaging Het
Dmxl2 T C 9: 54,281,953 (GRCm39) N2859S probably benign Het
Dnah12 A T 14: 26,428,418 (GRCm39) I280F probably benign Het
Dnah8 A C 17: 31,094,009 (GRCm39) D4701A probably damaging Het
Dyrk1a C A 16: 94,487,414 (GRCm39) H541Q possibly damaging Het
Eml4 T C 17: 83,785,345 (GRCm39) S906P probably benign Het
Fam169a G T 13: 97,243,578 (GRCm39) V203F probably damaging Het
Fmn1 C T 2: 113,260,152 (GRCm39) L682F unknown Het
Gli2 T C 1: 118,769,887 (GRCm39) Y555C probably damaging Het
Gm3278 A G 14: 16,081,505 (GRCm39) Y130C possibly damaging Het
Gm8237 T A 14: 5,863,554 (GRCm38) Y37F probably damaging Het
Golga4 T G 9: 118,385,029 (GRCm39) L717R probably damaging Het
Gtpbp4 C T 13: 9,024,249 (GRCm39) R568H probably benign Het
Il1f10 A G 2: 24,183,197 (GRCm39) N47S probably damaging Het
Itga6 A G 2: 71,673,618 (GRCm39) H884R probably benign Het
Kdm1a T C 4: 136,286,518 (GRCm39) K482R probably benign Het
Klk12 T C 7: 43,419,113 (GRCm39) V26A probably benign Het
Lrp2 T A 2: 69,278,583 (GRCm39) R3923S probably benign Het
Lrp2 C T 2: 69,288,767 (GRCm39) V3700M probably benign Het
Lrrk2 A G 15: 91,636,400 (GRCm39) D1458G probably benign Het
Mapre2 T A 18: 24,011,090 (GRCm39) S233T probably benign Het
Mki67 T C 7: 135,296,937 (GRCm39) D2699G possibly damaging Het
Mthfr T A 4: 148,128,947 (GRCm39) Y214* probably null Het
Ncoa6 A T 2: 155,257,041 (GRCm39) M834K possibly damaging Het
Neurl2 C T 2: 164,675,054 (GRCm39) D103N probably benign Het
Niban3 T A 8: 72,060,159 (GRCm39) I93N unknown Het
Or1j15 T C 2: 36,458,915 (GRCm39) Y102H possibly damaging Het
Or2ag16 A T 7: 106,352,571 (GRCm39) V8E probably benign Het
Or2b7 G A 13: 21,739,890 (GRCm39) L101F probably damaging Het
P2ry14 A G 3: 59,022,596 (GRCm39) V288A possibly damaging Het
Pde6b G T 5: 108,576,105 (GRCm39) S730I possibly damaging Het
Pdpk1 A T 17: 24,298,542 (GRCm39) V496D probably damaging Het
Plekho2 A T 9: 65,463,554 (GRCm39) L432M probably damaging Het
Ppa2 T C 3: 133,082,362 (GRCm39) L151P unknown Het
Ppp2r3c G A 12: 55,328,499 (GRCm39) T422I probably benign Het
Prelid3a T C 18: 67,610,122 (GRCm39) S151P probably damaging Het
Rad21l G A 2: 151,487,373 (GRCm39) P537L probably damaging Het
Sacs T A 14: 61,450,802 (GRCm39) S4283T probably benign Het
Samd9l A T 6: 3,373,843 (GRCm39) D1139E probably benign Het
Scn9a G T 2: 66,366,628 (GRCm39) H718Q probably benign Het
Slc1a3 A T 15: 8,668,636 (GRCm39) I443N probably damaging Het
Slc22a6 A G 19: 8,600,889 (GRCm39) M361V probably benign Het
Slc8a2 A G 7: 15,891,132 (GRCm39) Y724C probably damaging Het
Slf1 A T 13: 77,197,284 (GRCm39) S777T possibly damaging Het
Sltm T C 9: 70,494,352 (GRCm39) S901P probably benign Het
Smc1b A T 15: 84,997,047 (GRCm39) H524Q probably benign Het
Spast T C 17: 74,666,341 (GRCm39) S225P probably benign Het
Srsf12 C T 4: 33,231,246 (GRCm39) R252W probably damaging Het
Syne1 A G 10: 5,179,229 (GRCm39) L4415P probably damaging Het
Tmem117 A T 15: 94,535,990 (GRCm39) Y8F probably benign Het
Tmem241 T C 18: 12,197,288 (GRCm39) D180G possibly damaging Het
Tomm40 C T 7: 19,444,890 (GRCm39) V164I probably benign Het
Ttc41 T C 10: 86,548,841 (GRCm39) Y12H probably benign Het
Twnk T C 19: 44,996,299 (GRCm39) V244A probably benign Het
Ugt1a8 T C 1: 88,015,952 (GRCm39) S122P probably damaging Het
Vmn1r78 A G 7: 11,886,539 (GRCm39) K50R probably benign Het
Vmn2r10 A G 5: 109,151,390 (GRCm39) F75L probably benign Het
Wbp4 G T 14: 79,707,573 (GRCm39) Y179* probably null Het
Zfp106 A G 2: 120,354,600 (GRCm39) probably null Het
Zfp974 A T 7: 27,610,361 (GRCm39) C455S possibly damaging Het
Other mutations in Carmil1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00096:Carmil1 APN 13 24,295,821 (GRCm39) missense possibly damaging 0.68
IGL00392:Carmil1 APN 13 24,278,474 (GRCm39) missense probably damaging 1.00
IGL00943:Carmil1 APN 13 24,295,869 (GRCm39) missense possibly damaging 0.48
IGL01375:Carmil1 APN 13 24,278,454 (GRCm39) missense possibly damaging 0.88
IGL02043:Carmil1 APN 13 24,208,299 (GRCm39) unclassified probably benign
IGL02122:Carmil1 APN 13 24,220,541 (GRCm39) missense possibly damaging 0.95
IGL02178:Carmil1 APN 13 24,278,386 (GRCm39) missense probably damaging 1.00
IGL02264:Carmil1 APN 13 24,259,699 (GRCm39) missense possibly damaging 0.95
IGL02269:Carmil1 APN 13 24,339,393 (GRCm39) nonsense probably null
IGL02546:Carmil1 APN 13 24,299,482 (GRCm39) missense probably damaging 0.98
IGL02740:Carmil1 APN 13 24,278,501 (GRCm39) missense probably damaging 0.98
IGL02876:Carmil1 APN 13 24,338,651 (GRCm39) unclassified probably benign
IGL02976:Carmil1 APN 13 24,276,534 (GRCm39) missense possibly damaging 0.96
IGL03012:Carmil1 APN 13 24,220,355 (GRCm39) missense probably benign 0.19
IGL03107:Carmil1 APN 13 24,278,438 (GRCm39) missense probably damaging 0.99
H8562:Carmil1 UTSW 13 24,248,630 (GRCm39) missense probably benign 0.00
R0085:Carmil1 UTSW 13 24,209,850 (GRCm39) missense probably benign
R0119:Carmil1 UTSW 13 24,266,003 (GRCm39) missense probably damaging 0.98
R0166:Carmil1 UTSW 13 24,283,032 (GRCm39) missense probably damaging 1.00
R0299:Carmil1 UTSW 13 24,266,003 (GRCm39) missense probably damaging 0.98
R0304:Carmil1 UTSW 13 24,323,324 (GRCm39) missense probably damaging 0.99
R0335:Carmil1 UTSW 13 24,257,966 (GRCm39) missense probably damaging 1.00
R0369:Carmil1 UTSW 13 24,266,003 (GRCm39) missense probably damaging 0.98
R0462:Carmil1 UTSW 13 24,206,494 (GRCm39) missense probably benign 0.01
R1203:Carmil1 UTSW 13 24,282,989 (GRCm39) missense probably damaging 1.00
R1540:Carmil1 UTSW 13 24,283,037 (GRCm39) missense possibly damaging 0.92
R1730:Carmil1 UTSW 13 24,225,672 (GRCm39) missense probably damaging 1.00
R1770:Carmil1 UTSW 13 24,357,657 (GRCm39) missense probably damaging 1.00
R1831:Carmil1 UTSW 13 24,348,862 (GRCm39) missense probably benign 0.00
R1893:Carmil1 UTSW 13 24,208,446 (GRCm39) missense possibly damaging 0.72
R2099:Carmil1 UTSW 13 24,357,650 (GRCm39) missense probably benign 0.00
R2153:Carmil1 UTSW 13 24,325,656 (GRCm39) missense probably damaging 0.97
R2296:Carmil1 UTSW 13 24,299,492 (GRCm39) missense probably damaging 1.00
R2869:Carmil1 UTSW 13 24,229,051 (GRCm39) synonymous silent
R2872:Carmil1 UTSW 13 24,229,051 (GRCm39) synonymous silent
R3113:Carmil1 UTSW 13 24,253,740 (GRCm39) missense probably benign 0.22
R3508:Carmil1 UTSW 13 24,203,659 (GRCm39) utr 3 prime probably benign
R3780:Carmil1 UTSW 13 24,321,152 (GRCm39) missense probably damaging 0.99
R3954:Carmil1 UTSW 13 24,197,390 (GRCm39) missense probably benign 0.00
R4027:Carmil1 UTSW 13 24,251,206 (GRCm39) splice site probably benign
R4086:Carmil1 UTSW 13 24,208,444 (GRCm39) missense possibly damaging 0.56
R4647:Carmil1 UTSW 13 24,321,162 (GRCm39) missense probably damaging 1.00
R4792:Carmil1 UTSW 13 24,325,659 (GRCm39) missense possibly damaging 0.96
R4792:Carmil1 UTSW 13 24,251,173 (GRCm39) missense probably damaging 1.00
R5012:Carmil1 UTSW 13 24,208,403 (GRCm39) missense possibly damaging 0.81
R5166:Carmil1 UTSW 13 24,338,966 (GRCm39) critical splice donor site probably null
R5199:Carmil1 UTSW 13 24,295,853 (GRCm39) missense probably damaging 1.00
R5330:Carmil1 UTSW 13 24,209,929 (GRCm39) splice site probably null
R5472:Carmil1 UTSW 13 24,339,454 (GRCm39) missense probably damaging 0.97
R5478:Carmil1 UTSW 13 24,296,028 (GRCm39) missense probably damaging 1.00
R5496:Carmil1 UTSW 13 24,339,433 (GRCm39) missense probably damaging 1.00
R5775:Carmil1 UTSW 13 24,460,520 (GRCm39) missense probably benign
R5789:Carmil1 UTSW 13 24,305,831 (GRCm39) missense probably damaging 1.00
R5794:Carmil1 UTSW 13 24,276,533 (GRCm39) missense probably damaging 1.00
R5977:Carmil1 UTSW 13 24,253,719 (GRCm39) missense probably damaging 1.00
R6127:Carmil1 UTSW 13 24,220,335 (GRCm39) missense probably benign 0.03
R6128:Carmil1 UTSW 13 24,197,177 (GRCm39) nonsense probably null
R6403:Carmil1 UTSW 13 24,265,950 (GRCm39) missense probably damaging 1.00
R6450:Carmil1 UTSW 13 24,220,547 (GRCm39) missense probably damaging 0.98
R6451:Carmil1 UTSW 13 24,276,541 (GRCm39) nonsense probably null
R6684:Carmil1 UTSW 13 24,206,525 (GRCm39) missense unknown
R6891:Carmil1 UTSW 13 24,325,706 (GRCm39) missense probably benign 0.13
R6902:Carmil1 UTSW 13 24,299,528 (GRCm39) missense possibly damaging 0.79
R6924:Carmil1 UTSW 13 24,259,667 (GRCm39) nonsense probably null
R6946:Carmil1 UTSW 13 24,299,528 (GRCm39) missense possibly damaging 0.79
R7038:Carmil1 UTSW 13 24,323,318 (GRCm39) missense probably damaging 1.00
R7179:Carmil1 UTSW 13 24,204,052 (GRCm39) missense probably benign 0.00
R7282:Carmil1 UTSW 13 24,197,387 (GRCm39) missense probably benign
R7286:Carmil1 UTSW 13 24,197,377 (GRCm39) missense probably damaging 0.96
R7397:Carmil1 UTSW 13 24,228,294 (GRCm39) missense probably damaging 0.99
R7412:Carmil1 UTSW 13 24,282,793 (GRCm39) missense possibly damaging 0.50
R7611:Carmil1 UTSW 13 24,197,315 (GRCm39) missense probably benign 0.30
R7642:Carmil1 UTSW 13 24,251,189 (GRCm39) missense probably benign 0.12
R7827:Carmil1 UTSW 13 24,220,421 (GRCm39) missense probably benign 0.00
R7890:Carmil1 UTSW 13 24,197,215 (GRCm39) missense
R8014:Carmil1 UTSW 13 24,220,304 (GRCm39) missense possibly damaging 0.71
R8068:Carmil1 UTSW 13 24,259,711 (GRCm39) missense probably benign 0.00
R8214:Carmil1 UTSW 13 24,228,215 (GRCm39) missense probably damaging 0.99
R8247:Carmil1 UTSW 13 24,282,998 (GRCm39) missense probably damaging 1.00
R8272:Carmil1 UTSW 13 24,220,562 (GRCm39) missense probably benign
R8318:Carmil1 UTSW 13 24,220,442 (GRCm39) missense probably benign
R8361:Carmil1 UTSW 13 24,251,113 (GRCm39) critical splice donor site probably null
R8469:Carmil1 UTSW 13 24,296,011 (GRCm39) missense probably damaging 1.00
R8558:Carmil1 UTSW 13 24,209,863 (GRCm39) missense probably benign
R8722:Carmil1 UTSW 13 24,220,568 (GRCm39) missense probably benign 0.16
R8836:Carmil1 UTSW 13 24,339,029 (GRCm39) missense probably damaging 1.00
R8915:Carmil1 UTSW 13 24,325,709 (GRCm39) missense probably damaging 0.99
R8931:Carmil1 UTSW 13 24,338,704 (GRCm39) missense probably benign 0.03
R8932:Carmil1 UTSW 13 24,197,179 (GRCm39) missense
R9004:Carmil1 UTSW 13 24,225,662 (GRCm39) missense probably damaging 0.98
R9041:Carmil1 UTSW 13 24,282,793 (GRCm39) missense possibly damaging 0.50
R9103:Carmil1 UTSW 13 24,295,836 (GRCm39) missense probably benign 0.01
R9224:Carmil1 UTSW 13 24,292,512 (GRCm39) missense probably damaging 0.98
R9428:Carmil1 UTSW 13 24,295,834 (GRCm39) nonsense probably null
R9460:Carmil1 UTSW 13 24,253,750 (GRCm39) missense probably damaging 1.00
R9502:Carmil1 UTSW 13 24,323,357 (GRCm39) missense probably benign
R9548:Carmil1 UTSW 13 24,460,516 (GRCm39) missense probably damaging 1.00
X0025:Carmil1 UTSW 13 24,283,026 (GRCm39) missense possibly damaging 0.47
Z1088:Carmil1 UTSW 13 24,228,165 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TCGGAATCTGGACTCTGAATTC -3'
(R):5'- TGATGACGGAAGAGCTCTCC -3'

Sequencing Primer
(F):5'- CCCTGGAACTGACGTTACTGATG -3'
(R):5'- GAGCTCTCCTCCCCGAAAG -3'
Posted On 2021-04-30