Incidental Mutation 'R8714:Chid1'
ID 669774
Institutional Source Beutler Lab
Gene Symbol Chid1
Ensembl Gene ENSMUSG00000025512
Gene Name chitinase domain containing 1
Synonyms 3110023E09Rik
MMRRC Submission 068568-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.072) question?
Stock # R8714 (G1)
Quality Score 225.009
Status Not validated
Chromosome 7
Chromosomal Location 141073049-141119770 bp(-) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) T to A at 141093678 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Stop codon at position 313 (K313*)
Ref Sequence ENSEMBL: ENSMUSP00000130360 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026586] [ENSMUST00000118694] [ENSMUST00000143561] [ENSMUST00000153191] [ENSMUST00000166082] [ENSMUST00000209452]
AlphaFold Q922Q9
Predicted Effect probably benign
Transcript: ENSMUST00000026586
SMART Domains Protein: ENSMUSP00000026586
Gene: ENSMUSG00000025512

DomainStartEndE-ValueType
PDB:3BXW|A 4 240 1e-142 PDB
Blast:Glyco_18 82 302 1e-139 BLAST
SCOP:d1e9la1 84 240 1e-15 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000064642
SMART Domains Protein: ENSMUSP00000065953
Gene: ENSMUSG00000025512

DomainStartEndE-ValueType
PDB:3BXW|A 3 236 1e-143 PDB
Blast:Glyco_18 81 268 1e-121 BLAST
SCOP:d1e9la1 83 236 2e-16 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000118694
SMART Domains Protein: ENSMUSP00000112891
Gene: ENSMUSG00000025512

DomainStartEndE-ValueType
PDB:3BXW|A 1 237 1e-142 PDB
Blast:Glyco_18 79 299 1e-139 BLAST
SCOP:d1e9la1 81 237 1e-15 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000143561
SMART Domains Protein: ENSMUSP00000115174
Gene: ENSMUSG00000025512

DomainStartEndE-ValueType
low complexity region 22 32 N/A INTRINSIC
Pfam:Glyco_hydro_18 79 263 4e-11 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000153191
AA Change: K310*
SMART Domains Protein: ENSMUSP00000114693
Gene: ENSMUSG00000025512
AA Change: K310*

DomainStartEndE-ValueType
low complexity region 22 32 N/A INTRINSIC
Glyco_18 79 385 3.54e-27 SMART
Predicted Effect probably null
Transcript: ENSMUST00000166082
AA Change: K313*
SMART Domains Protein: ENSMUSP00000130360
Gene: ENSMUSG00000025512
AA Change: K313*

DomainStartEndE-ValueType
low complexity region 25 35 N/A INTRINSIC
Glyco_18 82 388 3.54e-27 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000209452
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 53 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4921539E11Rik C T 4: 103,100,093 (GRCm39) A137T probably benign Het
4930474N05Rik T A 14: 35,818,456 (GRCm39) C151* probably null Het
Abca4 A G 3: 121,942,528 (GRCm39) T1674A probably benign Het
Acat3 A T 17: 13,147,516 (GRCm39) V167E probably benign Het
Alb T C 5: 90,608,874 (GRCm39) probably null Het
Apol9a T C 15: 77,288,942 (GRCm39) T142A probably benign Het
Asb14 C T 14: 26,623,032 (GRCm39) P135S possibly damaging Het
Asb17 A G 3: 153,556,313 (GRCm39) Y140C probably damaging Het
Atp4a T A 7: 30,420,013 (GRCm39) I750N probably damaging Het
Bard1 T C 1: 71,069,986 (GRCm39) Y664C probably damaging Het
Cacnb3 G A 15: 98,530,262 (GRCm39) probably benign Het
Card11 T A 5: 140,899,147 (GRCm39) D9V possibly damaging Het
Casp8 A T 1: 58,872,812 (GRCm39) Q229H possibly damaging Het
Ccdc88b T C 19: 6,833,213 (GRCm39) E278G probably damaging Het
Cd209d CAT C 8: 3,923,772 (GRCm39) probably null Het
Cep350 T C 1: 155,736,477 (GRCm39) D2853G probably damaging Het
Cfap161 T C 7: 83,442,482 (GRCm39) I110M probably benign Het
Col16a1 T A 4: 129,947,961 (GRCm39) I227N unknown Het
D3Ertd751e G T 3: 41,700,998 (GRCm39) E6* probably null Het
Ddx41 T C 13: 55,682,250 (GRCm39) Q208R probably damaging Het
Dhrs13 G C 11: 77,923,492 (GRCm39) R70P possibly damaging Het
Dmrta1 A T 4: 89,579,682 (GRCm39) Q214L probably benign Het
Eif2ak4 T C 2: 118,292,765 (GRCm39) F1330L possibly damaging Het
Fbxw13 C T 9: 109,023,832 (GRCm39) V71I probably benign Het
H2-Q2 T C 17: 35,562,338 (GRCm39) L195P possibly damaging Het
Hemgn C T 4: 46,395,904 (GRCm39) G444D probably damaging Het
Lmtk2 A G 5: 144,112,876 (GRCm39) T1199A probably damaging Het
Ly75 T C 2: 60,164,829 (GRCm39) D783G probably damaging Het
Micall1 G A 15: 79,011,510 (GRCm39) A627T probably benign Het
Morc2a C T 11: 3,625,877 (GRCm39) T159I probably benign Het
Mthfr C A 4: 148,126,275 (GRCm39) N115K probably damaging Het
Muc1 G A 3: 89,138,821 (GRCm39) V477M possibly damaging Het
Mug1 C T 6: 121,859,681 (GRCm39) P1227S probably benign Het
Ogfod3 T A 11: 121,087,608 (GRCm39) D163V possibly damaging Het
Or51a43 T A 7: 103,717,483 (GRCm39) I252F probably damaging Het
Pcnx2 C T 8: 126,500,546 (GRCm39) V1515I probably benign Het
Plat G T 8: 23,262,248 (GRCm39) G91W probably damaging Het
Plscr3 G T 11: 69,738,838 (GRCm39) G167C probably benign Het
Plxna4 T A 6: 32,140,379 (GRCm39) K1670* probably null Het
Prb1c G A 6: 132,341,051 (GRCm39) T7I unknown Het
Rab7 T C 6: 87,989,369 (GRCm39) S34G probably damaging Het
Rnf157 C A 11: 116,237,891 (GRCm39) A577S probably benign Het
Rnf213 C T 11: 119,359,720 (GRCm39) S4371L Het
S1pr1 A T 3: 115,505,470 (GRCm39) S375T probably benign Het
Spen T C 4: 141,215,314 (GRCm39) N506S unknown Het
Sulf1 T A 1: 12,878,141 (GRCm39) Y210N probably benign Het
Tenm4 C T 7: 96,555,148 (GRCm39) P2618S probably benign Het
Tg A G 15: 66,555,891 (GRCm39) N861S probably damaging Het
Ttc29 A G 8: 79,060,331 (GRCm39) E417G possibly damaging Het
Tyw1 G A 5: 130,298,065 (GRCm39) R202Q probably damaging Het
Ubxn7 T A 16: 32,186,229 (GRCm39) probably benign Het
Vmn1r62 C A 7: 5,678,629 (GRCm39) Y103* probably null Het
Zfp804b A T 5: 6,822,378 (GRCm39) Y228* probably null Het
Other mutations in Chid1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00425:Chid1 APN 7 141,102,609 (GRCm39) missense probably damaging 1.00
IGL01095:Chid1 APN 7 141,110,142 (GRCm39) missense probably damaging 1.00
IGL01382:Chid1 APN 7 141,110,166 (GRCm39) missense probably damaging 1.00
IGL01505:Chid1 APN 7 141,093,807 (GRCm39) splice site probably null
IGL02108:Chid1 APN 7 141,112,841 (GRCm39) start codon destroyed probably null 0.98
IGL02216:Chid1 APN 7 141,076,506 (GRCm39) splice site probably benign
IGL02574:Chid1 APN 7 141,076,603 (GRCm39) splice site probably benign
R0006:Chid1 UTSW 7 141,076,339 (GRCm39) splice site probably benign
R0006:Chid1 UTSW 7 141,076,339 (GRCm39) splice site probably benign
R0711:Chid1 UTSW 7 141,076,590 (GRCm39) missense probably benign
R1518:Chid1 UTSW 7 141,108,384 (GRCm39) missense probably damaging 0.98
R1836:Chid1 UTSW 7 141,106,409 (GRCm39) splice site probably null
R5026:Chid1 UTSW 7 141,093,749 (GRCm39) missense probably damaging 0.99
R5516:Chid1 UTSW 7 141,076,059 (GRCm39) missense probably damaging 1.00
R5811:Chid1 UTSW 7 141,110,166 (GRCm39) missense probably damaging 1.00
R6009:Chid1 UTSW 7 141,109,493 (GRCm39) missense probably damaging 1.00
R6182:Chid1 UTSW 7 141,108,415 (GRCm39) missense probably benign 0.08
R6238:Chid1 UTSW 7 141,076,049 (GRCm39) missense probably benign 0.03
R6966:Chid1 UTSW 7 141,076,297 (GRCm39) missense possibly damaging 0.89
R7106:Chid1 UTSW 7 141,102,573 (GRCm39) missense probably benign 0.01
R7278:Chid1 UTSW 7 141,109,401 (GRCm39) splice site probably null
R7773:Chid1 UTSW 7 141,109,518 (GRCm39) missense probably benign 0.02
R9169:Chid1 UTSW 7 141,093,722 (GRCm39) missense probably damaging 1.00
R9536:Chid1 UTSW 7 141,093,755 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- TGGAGCTTTCTACCCAACCC -3'
(R):5'- CCAAGTAGATGACCTAGAGGACC -3'

Sequencing Primer
(F):5'- GGAGCTTTCTACCCAACCCATATC -3'
(R):5'- CTAGAGTCAGACGCAGGACTTC -3'
Posted On 2021-04-30