Incidental Mutation 'R8715:Vmn2r99'
ID |
669843 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r99
|
Ensembl Gene |
ENSMUSG00000090304 |
Gene Name |
vomeronasal 2, receptor 99 |
Synonyms |
EG665376 |
MMRRC Submission |
068613-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.122)
|
Stock # |
R8715 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
17 |
Chromosomal Location |
19582397-19614852 bp(+) (GRCm39) |
Type of Mutation |
critical splice acceptor site |
DNA Base Change (assembly) |
A to T
at 19613922 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000135236
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000176107]
[ENSMUST00000231989]
|
AlphaFold |
H3BK37 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000176107
|
SMART Domains |
Protein: ENSMUSP00000135236 Gene: ENSMUSG00000090304
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
81 |
448 |
5.7e-33 |
PFAM |
Pfam:NCD3G
|
508 |
561 |
1.8e-21 |
PFAM |
Pfam:7tm_3
|
593 |
829 |
4.6e-52 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000231989
|
Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.8%
- 20x: 99.3%
|
Validation Efficiency |
100% (50/50) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 52 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abcb1b |
A |
T |
5: 8,862,750 (GRCm39) |
H144L |
probably benign |
Het |
Adam25 |
A |
G |
8: 41,207,099 (GRCm39) |
N122D |
probably benign |
Het |
Armc10 |
T |
C |
5: 21,858,516 (GRCm39) |
F187S |
possibly damaging |
Het |
Atosb |
A |
G |
4: 43,033,944 (GRCm39) |
V444A |
possibly damaging |
Het |
Best3 |
T |
A |
10: 116,828,971 (GRCm39) |
F84I |
probably damaging |
Het |
Card11 |
A |
T |
5: 140,871,315 (GRCm39) |
D729E |
probably benign |
Het |
Ccdc60 |
A |
T |
5: 116,328,153 (GRCm39) |
F104I |
probably benign |
Het |
Ccdc88b |
T |
C |
19: 6,833,213 (GRCm39) |
E278G |
probably damaging |
Het |
Cd209d |
CAT |
C |
8: 3,923,772 (GRCm39) |
|
probably null |
Het |
Cdhr4 |
G |
A |
9: 107,874,596 (GRCm39) |
V9M |
|
Het |
Cfap46 |
T |
C |
7: 139,185,560 (GRCm39) |
T41A |
|
Het |
Cyp2c66 |
A |
G |
19: 39,159,388 (GRCm39) |
T280A |
probably benign |
Het |
Dis3l |
C |
T |
9: 64,214,342 (GRCm39) |
D1049N |
probably benign |
Het |
Dlc1 |
T |
A |
8: 37,405,795 (GRCm39) |
|
probably benign |
Het |
Faap100 |
T |
C |
11: 120,265,299 (GRCm39) |
T526A |
probably benign |
Het |
Gimap6 |
A |
T |
6: 48,679,552 (GRCm39) |
D161E |
probably damaging |
Het |
Gmpr |
T |
C |
13: 45,696,102 (GRCm39) |
V282A |
possibly damaging |
Het |
Gsap |
A |
G |
5: 21,431,245 (GRCm39) |
I190V |
possibly damaging |
Het |
Gucy2d |
C |
T |
7: 98,093,319 (GRCm39) |
T232I |
probably benign |
Het |
Lgals4 |
C |
T |
7: 28,540,921 (GRCm39) |
R282C |
probably damaging |
Het |
Lrp1 |
C |
A |
10: 127,396,490 (GRCm39) |
S2358I |
possibly damaging |
Het |
Lrrc74a |
A |
G |
12: 86,805,239 (GRCm39) |
N354D |
probably damaging |
Het |
Mdga2 |
T |
C |
12: 66,915,526 (GRCm39) |
E112G |
probably damaging |
Het |
Msh6 |
C |
T |
17: 88,293,195 (GRCm39) |
T650I |
probably benign |
Het |
Mst1 |
T |
C |
9: 107,959,242 (GRCm39) |
V203A |
possibly damaging |
Het |
Muc1 |
G |
A |
3: 89,138,821 (GRCm39) |
V477M |
possibly damaging |
Het |
Naa11 |
A |
G |
5: 97,540,066 (GRCm39) |
Y31H |
probably damaging |
Het |
Nphp1 |
G |
T |
2: 127,605,729 (GRCm39) |
H365Q |
possibly damaging |
Het |
Or1p4-ps1 |
T |
A |
11: 74,207,986 (GRCm39) |
I45N |
probably damaging |
Het |
Or2y17 |
A |
T |
11: 49,232,154 (GRCm39) |
Y265F |
probably damaging |
Het |
Or5m13 |
G |
A |
2: 85,748,273 (GRCm39) |
M1I |
probably null |
Het |
Osbpl9 |
A |
G |
4: 108,959,773 (GRCm39) |
F15S |
probably benign |
Het |
Pcdha12 |
A |
C |
18: 37,153,523 (GRCm39) |
N81H |
probably damaging |
Het |
Pde4d |
A |
G |
13: 110,071,876 (GRCm39) |
Q290R |
probably benign |
Het |
Pla1a |
A |
T |
16: 38,230,000 (GRCm39) |
N237K |
probably damaging |
Het |
Podnl1 |
T |
C |
8: 84,855,956 (GRCm39) |
Y239H |
|
Het |
Pou4f3 |
G |
T |
18: 42,528,593 (GRCm39) |
D179Y |
possibly damaging |
Het |
Ptch2 |
T |
C |
4: 116,968,719 (GRCm39) |
V995A |
probably damaging |
Het |
Ptprt |
C |
T |
2: 161,372,463 (GRCm39) |
C1403Y |
probably damaging |
Het |
Rab7 |
T |
C |
6: 87,989,369 (GRCm39) |
S34G |
probably damaging |
Het |
Rspry1 |
A |
G |
8: 95,349,888 (GRCm39) |
E92G |
probably damaging |
Het |
Sdccag8 |
T |
A |
1: 176,773,803 (GRCm39) |
|
probably benign |
Het |
Sdk2 |
G |
A |
11: 113,671,728 (GRCm39) |
T2140M |
probably damaging |
Het |
Serpina1e |
T |
C |
12: 103,917,177 (GRCm39) |
N164S |
probably benign |
Het |
Shisal1 |
A |
C |
15: 84,301,346 (GRCm39) |
V99G |
probably damaging |
Het |
Tdrkh |
T |
C |
3: 94,331,968 (GRCm39) |
V131A |
probably damaging |
Het |
Tm9sf3 |
T |
A |
19: 41,244,724 (GRCm39) |
N51I |
probably damaging |
Het |
Trav4-3 |
A |
G |
14: 53,836,762 (GRCm39) |
N76D |
possibly damaging |
Het |
Trhr2 |
T |
A |
8: 123,085,619 (GRCm39) |
I122F |
probably damaging |
Het |
Tyw1 |
G |
A |
5: 130,298,065 (GRCm39) |
R202Q |
probably damaging |
Het |
Zfp663 |
T |
C |
2: 165,194,644 (GRCm39) |
E525G |
probably damaging |
Het |
Zfp976 |
C |
T |
7: 42,262,869 (GRCm39) |
E324K |
possibly damaging |
Het |
|
Other mutations in Vmn2r99 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00503:Vmn2r99
|
APN |
17 |
19,599,116 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01113:Vmn2r99
|
APN |
17 |
19,614,518 (GRCm39) |
missense |
probably benign |
0.20 |
IGL01138:Vmn2r99
|
APN |
17 |
19,602,885 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL01646:Vmn2r99
|
APN |
17 |
19,613,920 (GRCm39) |
splice site |
probably benign |
|
IGL01769:Vmn2r99
|
APN |
17 |
19,600,377 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02112:Vmn2r99
|
APN |
17 |
19,600,494 (GRCm39) |
missense |
probably null |
0.99 |
IGL02891:Vmn2r99
|
APN |
17 |
19,598,952 (GRCm39) |
nonsense |
probably null |
|
IGL03132:Vmn2r99
|
APN |
17 |
19,598,485 (GRCm39) |
nonsense |
probably null |
|
FR4548:Vmn2r99
|
UTSW |
17 |
19,614,547 (GRCm39) |
missense |
probably damaging |
0.97 |
FR4976:Vmn2r99
|
UTSW |
17 |
19,614,547 (GRCm39) |
missense |
probably damaging |
0.97 |
PIT4382001:Vmn2r99
|
UTSW |
17 |
19,614,605 (GRCm39) |
missense |
probably damaging |
1.00 |
R0196:Vmn2r99
|
UTSW |
17 |
19,614,835 (GRCm39) |
missense |
probably benign |
0.00 |
R0720:Vmn2r99
|
UTSW |
17 |
19,599,305 (GRCm39) |
missense |
probably benign |
0.00 |
R1501:Vmn2r99
|
UTSW |
17 |
19,582,521 (GRCm39) |
missense |
possibly damaging |
0.93 |
R1519:Vmn2r99
|
UTSW |
17 |
19,600,322 (GRCm39) |
missense |
probably benign |
0.00 |
R1670:Vmn2r99
|
UTSW |
17 |
19,582,514 (GRCm39) |
missense |
probably benign |
0.37 |
R1682:Vmn2r99
|
UTSW |
17 |
19,598,207 (GRCm39) |
missense |
probably damaging |
0.97 |
R1873:Vmn2r99
|
UTSW |
17 |
19,582,415 (GRCm39) |
missense |
probably benign |
0.25 |
R1967:Vmn2r99
|
UTSW |
17 |
19,599,077 (GRCm39) |
missense |
probably benign |
0.01 |
R2101:Vmn2r99
|
UTSW |
17 |
19,598,253 (GRCm39) |
missense |
probably damaging |
1.00 |
R2474:Vmn2r99
|
UTSW |
17 |
19,598,891 (GRCm39) |
missense |
probably benign |
0.04 |
R2519:Vmn2r99
|
UTSW |
17 |
19,598,970 (GRCm39) |
missense |
probably damaging |
0.99 |
R3911:Vmn2r99
|
UTSW |
17 |
19,614,635 (GRCm39) |
missense |
possibly damaging |
0.92 |
R3947:Vmn2r99
|
UTSW |
17 |
19,599,252 (GRCm39) |
missense |
probably benign |
0.40 |
R3949:Vmn2r99
|
UTSW |
17 |
19,599,252 (GRCm39) |
missense |
probably benign |
0.40 |
R4016:Vmn2r99
|
UTSW |
17 |
19,598,832 (GRCm39) |
missense |
possibly damaging |
0.86 |
R4413:Vmn2r99
|
UTSW |
17 |
19,599,522 (GRCm39) |
missense |
probably damaging |
1.00 |
R4594:Vmn2r99
|
UTSW |
17 |
19,613,924 (GRCm39) |
missense |
probably damaging |
1.00 |
R4999:Vmn2r99
|
UTSW |
17 |
19,582,397 (GRCm39) |
start codon destroyed |
probably null |
0.96 |
R5206:Vmn2r99
|
UTSW |
17 |
19,598,868 (GRCm39) |
missense |
probably benign |
0.40 |
R5362:Vmn2r99
|
UTSW |
17 |
19,599,601 (GRCm39) |
missense |
probably benign |
0.00 |
R5377:Vmn2r99
|
UTSW |
17 |
19,599,531 (GRCm39) |
missense |
probably damaging |
1.00 |
R5455:Vmn2r99
|
UTSW |
17 |
19,614,408 (GRCm39) |
nonsense |
probably null |
|
R6021:Vmn2r99
|
UTSW |
17 |
19,598,210 (GRCm39) |
missense |
probably damaging |
1.00 |
R6059:Vmn2r99
|
UTSW |
17 |
19,599,242 (GRCm39) |
missense |
probably benign |
0.00 |
R6214:Vmn2r99
|
UTSW |
17 |
19,602,820 (GRCm39) |
missense |
probably benign |
0.19 |
R6215:Vmn2r99
|
UTSW |
17 |
19,602,820 (GRCm39) |
missense |
probably benign |
0.19 |
R6313:Vmn2r99
|
UTSW |
17 |
19,602,867 (GRCm39) |
missense |
probably damaging |
1.00 |
R6646:Vmn2r99
|
UTSW |
17 |
19,600,293 (GRCm39) |
missense |
probably damaging |
1.00 |
R6810:Vmn2r99
|
UTSW |
17 |
19,600,296 (GRCm39) |
missense |
probably benign |
0.20 |
R6885:Vmn2r99
|
UTSW |
17 |
19,600,457 (GRCm39) |
missense |
possibly damaging |
0.52 |
R6991:Vmn2r99
|
UTSW |
17 |
19,598,372 (GRCm39) |
missense |
probably benign |
0.03 |
R7060:Vmn2r99
|
UTSW |
17 |
19,614,826 (GRCm39) |
nonsense |
probably null |
|
R7090:Vmn2r99
|
UTSW |
17 |
19,613,972 (GRCm39) |
missense |
possibly damaging |
0.83 |
R7094:Vmn2r99
|
UTSW |
17 |
19,599,573 (GRCm39) |
missense |
probably benign |
0.00 |
R7449:Vmn2r99
|
UTSW |
17 |
19,599,407 (GRCm39) |
missense |
probably benign |
0.01 |
R7789:Vmn2r99
|
UTSW |
17 |
19,614,079 (GRCm39) |
missense |
possibly damaging |
0.91 |
R8039:Vmn2r99
|
UTSW |
17 |
19,600,302 (GRCm39) |
missense |
probably benign |
0.00 |
R8493:Vmn2r99
|
UTSW |
17 |
19,614,020 (GRCm39) |
missense |
probably benign |
0.15 |
R8511:Vmn2r99
|
UTSW |
17 |
19,614,443 (GRCm39) |
missense |
probably damaging |
1.00 |
R9462:Vmn2r99
|
UTSW |
17 |
19,598,388 (GRCm39) |
nonsense |
probably null |
|
R9681:Vmn2r99
|
UTSW |
17 |
19,598,889 (GRCm39) |
missense |
probably damaging |
1.00 |
R9737:Vmn2r99
|
UTSW |
17 |
19,582,563 (GRCm39) |
missense |
probably benign |
|
Z1088:Vmn2r99
|
UTSW |
17 |
19,599,563 (GRCm39) |
missense |
probably benign |
0.18 |
|
Predicted Primers |
PCR Primer
(F):5'- TAAAGAACAAGGAGCAGTCTCTAAC -3'
(R):5'- ACTCAGAGCTCGATTATTTGCC -3'
Sequencing Primer
(F):5'- CAAGGAGCAGTCTCTAACTCTAG -3'
(R):5'- CCTTAACAATAGGAGTGTCTCTGTGC -3'
|
Posted On |
2021-04-30 |