Mutagenetix > Incidental Mutation

Incidental Mutation 'R8796:Plxdc1'

671272

Institutional Source

Beutler Lab

Gene Symbol

Plxdc1

Ensembl Gene

ENSMUSG00000017417

Gene Name

plexin domain containing 1

Synonyms

Tem7, 2410003I07Rik

MMRRC Submission

068637-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.118) question?

Stock #

R8796 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

97814064-97877270 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 97847407 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 89 (S89P)

Ref Sequence

ENSEMBL: ENSMUSP00000103191 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017561] [ENSMUST00000107565]

AlphaFold

Q91ZV7

Predicted Effect

probably benign
Transcript: ENSMUST00000017561

SMART Domains

Protein: ENSMUSP00000017561
Gene: ENSMUSG00000017417

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
PSI	304	349	5.98e-2	SMART
transmembrane domain	425	447	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107565
AA Change: S89P

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000103191
Gene: ENSMUSG00000017417
AA Change: S89P

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
PSI	311	356	5.98e-2	SMART
transmembrane domain	432	454	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

96% (51/53)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921524L21Rik	A	T	18: 6,629,482 (GRCm39)	T182S	possibly damaging	Het
Abca12	A	C	1: 71,297,248 (GRCm39)		probably benign	Het
Aco1	T	A	4: 40,179,037 (GRCm39)	D345E	probably benign	Het
Acp6	T	C	3: 97,066,509 (GRCm39)	V9A	probably benign	Het
Akap1	A	C	11: 88,730,498 (GRCm39)	I597S	probably damaging	Het
B4galnt4	C	T	7: 140,647,488 (GRCm39)	T385I	probably damaging	Het
Bbof1	A	T	12: 84,460,068 (GRCm39)	T112S	possibly damaging	Het
Chd7	C	A	4: 8,838,691 (GRCm39)	H1297N	probably damaging	Het
Cldn15	T	C	5: 137,003,351 (GRCm39)	F147L	probably damaging	Het
Coq7	C	T	7: 118,126,640 (GRCm39)	E143K	probably damaging	Het
Ctnnb1	A	G	9: 120,784,498 (GRCm39)	N430S	probably damaging	Het
Cxcl12	G	T	6: 117,155,553 (GRCm39)	K92N	possibly damaging	Het
Dscaml1	T	C	9: 45,359,026 (GRCm39)	F95S	probably damaging	Het
Epha5	T	A	5: 84,255,850 (GRCm39)	H480L	probably damaging	Het
Fbxo30	G	A	10: 11,165,320 (GRCm39)	C14Y	probably damaging	Het
Gja5	A	G	3: 96,958,419 (GRCm39)	I159V	possibly damaging	Het
Herc2	A	T	7: 55,785,123 (GRCm39)	Q1487L	probably benign	Het
Hipk2	T	A	6: 38,675,158 (GRCm39)	Q1168L	probably damaging	Het
Kcnk12	T	A	17: 88,054,020 (GRCm39)	Y214F	probably damaging	Het
Kif5b	T	C	18: 6,226,965 (GRCm39)	K98E	probably benign	Het
Lama1	T	A	17: 68,117,146 (GRCm39)	N2480K		Het
Lrp1b	A	G	2: 40,793,426 (GRCm39)	C2610R		Het
Mast4	T	C	13: 102,919,899 (GRCm39)	Y536C	probably benign	Het
Ntrk1	A	G	3: 87,690,422 (GRCm39)	S407P	probably benign	Het
Ogdh	T	A	11: 6,297,129 (GRCm39)	M527K	possibly damaging	Het
Or51b6	T	C	7: 103,556,201 (GRCm39)	V182A		Het
Or5m9b	G	A	2: 85,905,518 (GRCm39)	V145M	possibly damaging	Het
Prdm2	A	G	4: 142,860,017 (GRCm39)	I1091T	probably benign	Het
Psg16	C	A	7: 16,827,814 (GRCm39)	H166N	possibly damaging	Het
Qrfpr	T	A	3: 36,234,345 (GRCm39)	Y332F	probably damaging	Het
Rab31	A	T	17: 66,079,529 (GRCm39)	I4K	possibly damaging	Het
Ranbp10	C	A	8: 106,499,665 (GRCm39)		probably benign	Het
Rasgrf2	T	C	13: 92,038,685 (GRCm39)	S453G		Het
Rxfp2	C	T	5: 149,942,262 (GRCm39)		probably benign	Het
S100a8	A	G	3: 90,576,865 (GRCm39)	E6G	probably damaging	Het
Sart1	T	C	19: 5,438,376 (GRCm39)	K94E	probably damaging	Het
Sema4d	A	T	13: 51,865,546 (GRCm39)	F297I	probably damaging	Het
Sgk2	A	G	2: 162,848,723 (GRCm39)	K287E	probably damaging	Het
Sgsm1	T	A	5: 113,411,123 (GRCm39)	T868S	probably benign	Het
Skint6	G	T	4: 112,661,891 (GRCm39)	T1231K	possibly damaging	Het
Slc35b3	C	T	13: 39,121,722 (GRCm39)		probably benign	Het
Slf1	A	T	13: 77,214,784 (GRCm39)	M634K	probably benign	Het
Slit2	A	G	5: 48,460,190 (GRCm39)	D1424G	probably benign	Het
Snx21	G	A	2: 164,628,749 (GRCm39)	V131I	possibly damaging	Het
Son	AGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	AGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	16: 91,457,222 (GRCm39)		probably benign	Het
Tas1r3	A	G	4: 155,945,848 (GRCm39)	V516A	probably benign	Het
Tas2r120	A	T	6: 132,634,081 (GRCm39)	R54S	probably damaging	Het
Tmem109	A	T	19: 10,849,995 (GRCm39)	L99Q	probably damaging	Het
Tnfrsf1b	A	G	4: 144,946,485 (GRCm39)	S309P	possibly damaging	Het
Trav11	C	T	14: 53,757,227 (GRCm39)	A85V	probably benign	Het
Trp53	G	A	11: 69,480,434 (GRCm39)	R267H	possibly damaging	Het
Ttn	G	A	2: 76,653,314 (GRCm39)	R12631C	possibly damaging	Het
Vmn2r10	T	A	5: 109,143,917 (GRCm39)	T678S	possibly damaging	Het
Vmn2r124	T	C	17: 18,282,933 (GRCm39)	M209T	possibly damaging	Het
Vmn2r24	A	T	6: 123,757,500 (GRCm39)	M123L	probably benign	Het
Wdr41	T	G	13: 95,151,575 (GRCm39)	L245R	possibly damaging	Het
Wwp2	G	T	8: 108,283,189 (GRCm39)	G814W	probably null	Het

Other mutations in Plxdc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01896:Plxdc1	APN	11	97,815,408 (GRCm39)	missense	probably damaging	0.98
IGL02490:Plxdc1	APN	11	97,845,604 (GRCm39)	missense	probably benign	0.17
IGL02568:Plxdc1	APN	11	97,869,390 (GRCm39)	missense	probably damaging	1.00
IGL02618:Plxdc1	APN	11	97,823,130 (GRCm39)	missense	probably benign
IGL03169:Plxdc1	APN	11	97,823,146 (GRCm39)	missense	possibly damaging	0.80
R0200:Plxdc1	UTSW	11	97,824,838 (GRCm39)	missense	probably damaging	1.00
R0627:Plxdc1	UTSW	11	97,823,030 (GRCm39)	splice site	probably null
R1510:Plxdc1	UTSW	11	97,823,150 (GRCm39)	missense	probably damaging	1.00
R2144:Plxdc1	UTSW	11	97,824,838 (GRCm39)	missense	probably damaging	1.00
R5334:Plxdc1	UTSW	11	97,846,931 (GRCm39)	missense	possibly damaging	0.87
R6084:Plxdc1	UTSW	11	97,819,289 (GRCm39)	missense	probably damaging	1.00
R6243:Plxdc1	UTSW	11	97,846,299 (GRCm39)	missense	probably damaging	1.00
R6305:Plxdc1	UTSW	11	97,829,416 (GRCm39)	missense	probably damaging	1.00
R7224:Plxdc1	UTSW	11	97,823,153 (GRCm39)	missense	possibly damaging	0.88
R7574:Plxdc1	UTSW	11	97,847,316 (GRCm39)	missense	possibly damaging	0.89
R7633:Plxdc1	UTSW	11	97,846,977 (GRCm39)	missense	possibly damaging	0.95
R7909:Plxdc1	UTSW	11	97,823,130 (GRCm39)	missense	probably benign
R8056:Plxdc1	UTSW	11	97,869,343 (GRCm39)	missense	probably damaging	0.99
R8536:Plxdc1	UTSW	11	97,869,522 (GRCm39)	splice site	probably null
R8754:Plxdc1	UTSW	11	97,846,337 (GRCm39)	missense	possibly damaging	0.80
R9189:Plxdc1	UTSW	11	97,844,788 (GRCm39)	missense	probably benign
R9450:Plxdc1	UTSW	11	97,845,681 (GRCm39)	missense	probably damaging	0.98
R9583:Plxdc1	UTSW	11	97,824,844 (GRCm39)	missense	probably damaging	1.00
RF007:Plxdc1	UTSW	11	97,869,504 (GRCm39)	missense	probably benign	0.30

Predicted Primers

PCR Primer
(F):5'- TAGGCCTAGGCACTCACTGAAG -3'
(R):5'- TAACTCTGGCTTGTCTGGACAG -3'

Sequencing Primer
(F):5'- TAGGCACTCACTGAAGCCTGTC -3'
(R):5'- AGCAACGGCCAGACTTGTTG -3'

Posted On

2021-04-30