Incidental Mutation 'K3955:Recql'
| ID |
67230 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Recql
|
| Ensembl Gene |
ENSMUSG00000030243 |
| Gene Name |
RecQ protein-like |
| Synonyms |
RecQ1 |
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.324)
|
| Stock # |
K3955 (G3)
of strain
706
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
6 |
| Chromosomal Location |
142296068-142332802 bp(-) (GRCm39) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
G to T
at 142323932 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Stop codon
at position 54
(S54*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000145179
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000032370]
[ENSMUST00000100832]
[ENSMUST00000111803]
[ENSMUST00000128082]
[ENSMUST00000129694]
[ENSMUST00000203772]
|
| AlphaFold |
Q9Z129 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000032370
AA Change: S54*
|
| SMART Domains |
Protein: ENSMUSP00000032370
Gene: ENSMUSG00000030243
AA Change: S54*
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
6 |
51 |
N/A |
INTRINSIC |
|
DEXDc
|
88 |
291 |
2.5e-27 |
SMART |
|
HELICc
|
328 |
409 |
2.2e-26 |
SMART |
|
Pfam:RQC
|
488 |
592 |
5.5e-6 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000100832
AA Change: S54*
|
| SMART Domains |
Protein: ENSMUSP00000098394
Gene: ENSMUSG00000030243
AA Change: S54*
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
6 |
51 |
N/A |
INTRINSIC |
|
DEXDc
|
88 |
291 |
6e-25 |
SMART |
|
HELICc
|
328 |
409 |
5.51e-24 |
SMART |
|
Pfam:RQC
|
488 |
592 |
1.1e-8 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000111803
AA Change: S54*
|
| SMART Domains |
Protein: ENSMUSP00000107434
Gene: ENSMUSG00000030243
AA Change: S54*
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
6 |
51 |
N/A |
INTRINSIC |
|
DEXDc
|
88 |
291 |
6e-25 |
SMART |
|
HELICc
|
328 |
409 |
5.51e-24 |
SMART |
|
Pfam:RecQ_Zn_bind
|
420 |
479 |
2.5e-15 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000128082
AA Change: S54*
|
| SMART Domains |
Protein: ENSMUSP00000120951
Gene: ENSMUSG00000030243
AA Change: S54*
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:DEXDc
|
24 |
84 |
4e-16 |
BLAST |
|
PDB:2WWY|B
|
63 |
85 |
9e-9 |
PDB |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000129694
AA Change: S54*
|
| SMART Domains |
Protein: ENSMUSP00000122328
Gene: ENSMUSG00000030243
AA Change: S54*
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
6 |
51 |
N/A |
INTRINSIC |
|
Pfam:DEAD
|
93 |
166 |
6.6e-11 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000203772
AA Change: S54*
|
| SMART Domains |
Protein: ENSMUSP00000145179
Gene: ENSMUSG00000030243
AA Change: S54*
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
6 |
51 |
N/A |
INTRINSIC |
|
Pfam:DEAD
|
93 |
166 |
8.5e-12 |
PFAM |
|
| Meta Mutation Damage Score |
0.9755 |
| Coding Region Coverage |
- 1x: 99.5%
- 3x: 98.9%
- 10x: 97.4%
- 20x: 94.9%
|
| Validation Efficiency |
100% (42/42) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the RecQ DNA helicase family. DNA helicases are enzymes involved in various types of DNA repair, including mismatch repair, nucleotide excision repair and direct repair. The encoded protein is involved in the processing of Holliday junctions, the suppression of sister chromatid exchanges, telomere maintenance, and is required for genotoxic stress resistance. Defects in this gene have been associated with several types of cancer. [provided by RefSeq, Jan 2017]
PHENOTYPE: Homozygous mutation of this gene results in chromosomal instability, with embryonic fibroblasts exhibiting aneuploidy, spontaneous chromosomal breakage, frequent translocation events, increased sensitivity to ionizing radiation, and increased frequency of sister chromatid exchange. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 45 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Agap1 |
G |
A |
1: 89,815,326 (GRCm39) |
R738H |
probably damaging |
Het |
| Arhgap28 |
T |
C |
17: 68,311,001 (GRCm39) |
E2G |
probably damaging |
Het |
| Atad2b |
C |
A |
12: 5,004,536 (GRCm39) |
|
probably benign |
Het |
| Atmin |
T |
A |
8: 117,683,775 (GRCm39) |
C478* |
probably null |
Het |
| Calr |
T |
C |
8: 85,572,902 (GRCm39) |
Y57C |
probably damaging |
Het |
| Cdh13 |
G |
A |
8: 119,401,843 (GRCm39) |
V82M |
probably damaging |
Het |
| Ces3a |
A |
T |
8: 105,777,259 (GRCm39) |
|
probably benign |
Het |
| Dmbt1 |
T |
C |
7: 130,721,293 (GRCm39) |
Y1854H |
probably damaging |
Het |
| Dnah1 |
T |
A |
14: 30,988,416 (GRCm39) |
M3429L |
probably benign |
Het |
| Dscam |
A |
G |
16: 96,474,887 (GRCm39) |
F1225S |
probably benign |
Het |
| E030025P04Rik |
G |
A |
11: 109,034,778 (GRCm39) |
P37S |
unknown |
Het |
| Eral1 |
A |
T |
11: 77,966,847 (GRCm39) |
D189E |
probably damaging |
Het |
| Fbxw14 |
G |
T |
9: 109,105,313 (GRCm39) |
P284Q |
possibly damaging |
Het |
| Fcrl6 |
A |
G |
1: 172,425,251 (GRCm39) |
V260A |
probably benign |
Het |
| Fezf2 |
A |
T |
14: 12,345,097 (GRCm38) |
F30Y |
probably damaging |
Het |
| Gjb4 |
A |
T |
4: 127,245,293 (GRCm39) |
V216D |
probably benign |
Het |
| Gm9758 |
G |
A |
5: 14,963,522 (GRCm39) |
|
probably benign |
Het |
| Gm9758 |
C |
G |
5: 14,963,553 (GRCm39) |
V92L |
probably benign |
Het |
| Gmps |
A |
C |
3: 63,908,954 (GRCm39) |
R485S |
probably damaging |
Het |
| Gtdc1 |
C |
T |
2: 44,642,233 (GRCm39) |
|
probably null |
Het |
| H2-Ob |
C |
T |
17: 34,460,158 (GRCm39) |
R19C |
probably damaging |
Het |
| Lars2 |
T |
C |
9: 123,206,842 (GRCm39) |
V103A |
probably damaging |
Het |
| Mtrex |
A |
C |
13: 113,047,513 (GRCm39) |
Y277* |
probably null |
Het |
| Ndnf |
G |
A |
6: 65,678,413 (GRCm39) |
|
probably benign |
Het |
| Nectin1 |
A |
G |
9: 43,703,375 (GRCm39) |
Y211C |
probably damaging |
Het |
| Notch4 |
C |
T |
17: 34,787,436 (GRCm39) |
T332I |
probably damaging |
Het |
| Or13c25 |
A |
G |
4: 52,911,081 (GRCm39) |
F238L |
probably damaging |
Het |
| Or8g28 |
A |
C |
9: 39,169,926 (GRCm39) |
L14W |
probably damaging |
Het |
| Or8g53 |
A |
G |
9: 39,683,469 (GRCm39) |
I209T |
probably benign |
Het |
| Paf1 |
T |
C |
7: 28,096,350 (GRCm39) |
|
probably null |
Het |
| Pcdhb1 |
G |
T |
18: 37,399,026 (GRCm39) |
G326C |
probably damaging |
Het |
| Plcl1 |
A |
G |
1: 55,737,098 (GRCm39) |
Y813C |
possibly damaging |
Het |
| Pramel25 |
T |
C |
4: 143,521,710 (GRCm39) |
I442T |
possibly damaging |
Het |
| Prkcq |
T |
C |
2: 11,251,604 (GRCm39) |
|
probably benign |
Het |
| Proser3 |
G |
T |
7: 30,242,924 (GRCm39) |
P218T |
probably damaging |
Het |
| Rccd1 |
G |
A |
7: 79,970,419 (GRCm39) |
S66F |
probably benign |
Het |
| Samd15 |
G |
T |
12: 87,247,534 (GRCm39) |
G73V |
probably benign |
Het |
| Siglec1 |
T |
C |
2: 130,923,359 (GRCm39) |
N462S |
probably benign |
Het |
| Syne2 |
G |
T |
12: 75,977,439 (GRCm39) |
A1296S |
probably damaging |
Het |
| Tlk1 |
T |
C |
2: 70,552,045 (GRCm39) |
E542G |
possibly damaging |
Het |
| Tnks1bp1 |
C |
T |
2: 84,892,755 (GRCm39) |
T232I |
probably benign |
Het |
| Tnrc6c |
T |
A |
11: 117,651,564 (GRCm39) |
Y1696N |
probably damaging |
Het |
| Uggt1 |
A |
G |
1: 36,201,434 (GRCm39) |
I1102T |
probably benign |
Het |
| Vmn1r84 |
C |
T |
7: 12,095,884 (GRCm39) |
V270M |
probably damaging |
Het |
| Wasf1 |
C |
T |
10: 40,812,191 (GRCm39) |
P327S |
unknown |
Het |
|
| Other mutations in Recql |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00673:Recql
|
APN |
6 |
142,322,647 (GRCm39) |
missense |
probably null |
0.34 |
|
IGL01933:Recql
|
APN |
6 |
142,310,364 (GRCm39) |
missense |
probably benign |
0.33 |
|
IGL02026:Recql
|
APN |
6 |
142,312,394 (GRCm39) |
nonsense |
probably null |
|
|
IGL03181:Recql
|
APN |
6 |
142,323,918 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0380:Recql
|
UTSW |
6 |
142,315,156 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1371:Recql
|
UTSW |
6 |
142,318,601 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1742:Recql
|
UTSW |
6 |
142,310,298 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1780:Recql
|
UTSW |
6 |
142,310,324 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1921:Recql
|
UTSW |
6 |
142,311,315 (GRCm39) |
missense |
probably benign |
0.41 |
|
R2032:Recql
|
UTSW |
6 |
142,313,009 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2966:Recql
|
UTSW |
6 |
142,309,313 (GRCm39) |
missense |
probably benign |
0.10 |
|
R4666:Recql
|
UTSW |
6 |
142,322,567 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4779:Recql
|
UTSW |
6 |
142,309,426 (GRCm39) |
intron |
probably benign |
|
|
R4863:Recql
|
UTSW |
6 |
142,304,732 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5115:Recql
|
UTSW |
6 |
142,304,285 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5400:Recql
|
UTSW |
6 |
142,308,073 (GRCm39) |
intron |
probably benign |
|
|
R5781:Recql
|
UTSW |
6 |
142,311,344 (GRCm39) |
splice site |
probably null |
|
|
R5981:Recql
|
UTSW |
6 |
142,318,604 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6372:Recql
|
UTSW |
6 |
142,322,566 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6651:Recql
|
UTSW |
6 |
142,310,160 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6786:Recql
|
UTSW |
6 |
142,310,278 (GRCm39) |
missense |
probably benign |
0.43 |
|
R7399:Recql
|
UTSW |
6 |
142,320,610 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7515:Recql
|
UTSW |
6 |
142,320,611 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8097:Recql
|
UTSW |
6 |
142,320,637 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8817:Recql
|
UTSW |
6 |
142,304,612 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R8873:Recql
|
UTSW |
6 |
142,308,013 (GRCm39) |
missense |
|
|
|
R9103:Recql
|
UTSW |
6 |
142,322,515 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R9454:Recql
|
UTSW |
6 |
142,320,617 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R9683:Recql
|
UTSW |
6 |
142,305,646 (GRCm39) |
missense |
|
|
|
| Predicted Primers |
PCR Primer
(F):5'- AAGAATATCTGCCTGCAAGTTCCCC -3'
(R):5'- TCCCTACGTGTTGAATGAACCACTG -3'
Sequencing Primer
(F):5'- TGCAAGTTCCCCATGCCAG -3'
(R):5'- GAGGTTCTGACTCTAGAACATGCTC -3'
|
| Posted On |
2013-09-03 |
Incidental Mutation