Mutagenetix > Incidental Mutation

Incidental Mutation 'R8811:Tro'

672450

Institutional Source

Beutler Lab

Gene Symbol

Tro

Ensembl Gene

ENSMUSG00000025272

Gene Name

trophinin

Synonyms

Tnn, magphinin, magphinin-alpha, magphinin-beta 2, magphinin-gamma, trophinin-2, necdin and trophinin like, Maged3l, Maged3, Trol

MMRRC Submission

068646-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.097) question?

Stock #

R8811 (G1)

Quality Score

221.999

Status

Validated

Chromosome

Chromosomal Location

149428300-149440579 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 149438555 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Leucine at position 34 (S34L)

Ref Sequence

ENSEMBL: ENSMUSP00000084513 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000087253] [ENSMUST00000087258] [ENSMUST00000112709] [ENSMUST00000148604] [ENSMUST00000151403] [ENSMUST00000163450] [ENSMUST00000163969] [ENSMUST00000164071]

AlphaFold

Q6DIC6

Predicted Effect

unknown
Transcript: ENSMUST00000087253
AA Change: S34L

SMART Domains

Protein: ENSMUSP00000084508
Gene: ENSMUSG00000025272
AA Change: S34L

Domain	Start	End	E-Value	Type
low complexity region	16	30	N/A	INTRINSIC
low complexity region	48	55	N/A	INTRINSIC
internal_repeat_2	62	105	5.33e-6	PROSPERO
internal_repeat_1	95	280	8.68e-15	PROSPERO
internal_repeat_2	120	164	5.33e-6	PROSPERO
internal_repeat_1	275	441	8.68e-15	PROSPERO
low complexity region	445	471	N/A	INTRINSIC
low complexity region	491	501	N/A	INTRINSIC
low complexity region	526	542	N/A	INTRINSIC
Pfam:MAGE	596	765	8e-60	PFAM
SCOP:d1gt91_	780	951	9e-3	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000087258
AA Change: S34L

SMART Domains

Protein: ENSMUSP00000084513
Gene: ENSMUSG00000025272
AA Change: S34L

Domain	Start	End	E-Value	Type
low complexity region	16	30	N/A	INTRINSIC
low complexity region	48	55	N/A	INTRINSIC
internal_repeat_3	62	105	6.04e-6	PROSPERO
internal_repeat_2	95	280	2.73e-15	PROSPERO
internal_repeat_3	120	164	6.04e-6	PROSPERO
internal_repeat_2	275	441	2.73e-15	PROSPERO
low complexity region	445	471	N/A	INTRINSIC
low complexity region	491	501	N/A	INTRINSIC
low complexity region	526	542	N/A	INTRINSIC
Pfam:MAGE	596	765	1.6e-58	PFAM
low complexity region	794	810	N/A	INTRINSIC
low complexity region	891	1028	N/A	INTRINSIC
low complexity region	1057	1073	N/A	INTRINSIC
low complexity region	1087	1108	N/A	INTRINSIC
low complexity region	1110	1142	N/A	INTRINSIC
low complexity region	1144	1155	N/A	INTRINSIC
low complexity region	1157	1175	N/A	INTRINSIC
internal_repeat_1	1176	1361	9.97e-23	PROSPERO
low complexity region	1393	1409	N/A	INTRINSIC
internal_repeat_1	1540	1728	9.97e-23	PROSPERO
low complexity region	1764	1786	N/A	INTRINSIC
low complexity region	1790	1815	N/A	INTRINSIC
low complexity region	1821	1836	N/A	INTRINSIC
low complexity region	1870	1910	N/A	INTRINSIC
low complexity region	1915	1931	N/A	INTRINSIC
low complexity region	1962	2085	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000112709
AA Change: S34L

SMART Domains

Protein: ENSMUSP00000108329
Gene: ENSMUSG00000025272
AA Change: S34L

Domain	Start	End	E-Value	Type
low complexity region	16	30	N/A	INTRINSIC
low complexity region	48	55	N/A	INTRINSIC
internal_repeat_3	62	105	6.04e-6	PROSPERO
internal_repeat_2	95	280	2.73e-15	PROSPERO
internal_repeat_3	120	164	6.04e-6	PROSPERO
internal_repeat_2	275	441	2.73e-15	PROSPERO
low complexity region	445	471	N/A	INTRINSIC
low complexity region	491	501	N/A	INTRINSIC
low complexity region	526	542	N/A	INTRINSIC
MAGE	596	765	2.03e-90	SMART
low complexity region	794	810	N/A	INTRINSIC
low complexity region	891	1028	N/A	INTRINSIC
low complexity region	1057	1073	N/A	INTRINSIC
low complexity region	1087	1108	N/A	INTRINSIC
low complexity region	1110	1142	N/A	INTRINSIC
low complexity region	1144	1155	N/A	INTRINSIC
low complexity region	1157	1175	N/A	INTRINSIC
internal_repeat_1	1176	1361	9.97e-23	PROSPERO
low complexity region	1393	1409	N/A	INTRINSIC
internal_repeat_1	1540	1728	9.97e-23	PROSPERO
low complexity region	1764	1786	N/A	INTRINSIC
low complexity region	1790	1815	N/A	INTRINSIC
low complexity region	1821	1836	N/A	INTRINSIC
low complexity region	1870	1910	N/A	INTRINSIC
low complexity region	1915	1931	N/A	INTRINSIC
low complexity region	1962	2085	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000148604
AA Change: S34L

SMART Domains

Protein: ENSMUSP00000116905
Gene: ENSMUSG00000025272
AA Change: S34L

Domain	Start	End	E-Value	Type
low complexity region	16	30	N/A	INTRINSIC
low complexity region	48	55	N/A	INTRINSIC
internal_repeat_1	95	280	5.1e-9	PROSPERO
internal_repeat_1	275	441	5.1e-9	PROSPERO
low complexity region	445	471	N/A	INTRINSIC
low complexity region	491	501	N/A	INTRINSIC
low complexity region	526	542	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000151403
AA Change: S34L

SMART Domains

Protein: ENSMUSP00000120457
Gene: ENSMUSG00000025272
AA Change: S34L

Domain	Start	End	E-Value	Type
low complexity region	16	30	N/A	INTRINSIC
low complexity region	48	55	N/A	INTRINSIC
internal_repeat_1	95	280	6.85e-11	PROSPERO
internal_repeat_1	275	441	6.85e-11	PROSPERO
low complexity region	445	471	N/A	INTRINSIC
low complexity region	491	501	N/A	INTRINSIC
low complexity region	526	542	N/A	INTRINSIC
Pfam:MAGE	596	765	6.3e-60	PFAM
low complexity region	794	808	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000163450

Predicted Effect

unknown
Transcript: ENSMUST00000163969
AA Change: S34L

SMART Domains

Protein: ENSMUSP00000126054
Gene: ENSMUSG00000025272
AA Change: S34L

Domain	Start	End	E-Value	Type
low complexity region	16	30	N/A	INTRINSIC
low complexity region	48	55	N/A	INTRINSIC
internal_repeat_1	95	280	5.6e-10	PROSPERO
internal_repeat_1	275	441	5.6e-10	PROSPERO
low complexity region	445	471	N/A	INTRINSIC
low complexity region	491	501	N/A	INTRINSIC
low complexity region	526	542	N/A	INTRINSIC
Pfam:MAGE	596	765	5.9e-60	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000164071

SMART Domains

Protein: ENSMUSP00000126042
Gene: ENSMUSG00000025272

Domain	Start	End	E-Value	Type
Pfam:MAGE	54	223	7.1e-61	PFAM
low complexity region	252	266	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (54/54)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a membrane protein that mediates cell adhesion between trophoblastic cells and the epithelial cells of the endometrium. The encoded protein participates in cell signalling during embryo implantation, and may also be involved in cancer formation. This gene is located near several other closely related genes on chromosome X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2012]
PHENOTYPE: Homozygous female or hemizygous male mice on a mixed 129 and NIH black Swiss background are viable, fertile and elderly mice exhibit no disorders. On an inbred 129 background, homozygous female or hemizygous male mice show partial embryonic lethality between E3.5 and E8.5. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca17	T	G	17: 24,536,212 (GRCm39)	K485T	probably benign	Het
Abcc12	G	T	8: 87,280,023 (GRCm39)	L337M	probably damaging	Het
Adcy4	T	C	14: 56,010,221 (GRCm39)	D687G	probably benign	Het
Aldoc	T	A	11: 78,215,610 (GRCm39)	I98N	probably damaging	Het
Aoah	T	A	13: 21,184,121 (GRCm39)	V395D	probably damaging	Het
Arap1	C	T	7: 101,036,403 (GRCm39)	R397W	probably damaging	Het
Arl16	A	T	11: 120,357,526 (GRCm39)	M63K	probably damaging	Het
Atf7	T	C	15: 102,502,144 (GRCm39)	D4G	probably damaging	Het
Atp6v0d2	A	T	4: 19,922,397 (GRCm39)	V34D	probably benign	Het
Calhm4	T	A	10: 33,917,661 (GRCm39)	K263N	probably benign	Het
Camk1g	C	G	1: 193,044,408 (GRCm39)	G2A	probably damaging	Het
Cenpe	A	G	3: 134,929,001 (GRCm39)	T302A	probably damaging	Het
Cps1	T	C	1: 67,253,246 (GRCm39)	V1246A	probably benign	Het
Csmd3	T	C	15: 47,560,139 (GRCm39)	D1397G		Het
Ddx39b	T	A	17: 35,463,435 (GRCm39)	S115T	probably benign	Het
Dnaja3	C	A	16: 4,514,383 (GRCm39)	T305K	probably benign	Het
Dusp7	C	G	9: 106,248,241 (GRCm39)	H290D	probably benign	Het
Emilin2	T	A	17: 71,582,282 (GRCm39)	D148V	possibly damaging	Het
Erbin	C	T	13: 104,022,824 (GRCm39)	R5Q	probably damaging	Het
Fam3b	T	C	16: 97,313,715 (GRCm39)		probably benign	Het
Foxn3	T	C	12: 99,162,951 (GRCm39)	S317G	probably benign	Het
Gipc1	T	A	8: 84,388,919 (GRCm39)	M177K	possibly damaging	Het
Grpel2	A	C	18: 61,851,823 (GRCm39)		probably benign	Het
Htr1a	G	C	13: 105,581,101 (GRCm39)	A114P	probably damaging	Het
Iqch	A	T	9: 63,452,195 (GRCm39)	M210K	possibly damaging	Het
Kdelr3	T	C	15: 79,410,052 (GRCm39)	I179T	possibly damaging	Het
Lat2	C	T	5: 134,635,553 (GRCm39)		probably benign	Het
Mcrip1	A	G	11: 120,435,605 (GRCm39)	V10A	probably damaging	Het
Mib1	C	T	18: 10,755,643 (GRCm39)	L350F	probably benign	Het
Nhlrc2	T	A	19: 56,583,344 (GRCm39)	V605E	probably benign	Het
Nup133	AAGAGA	AAGA	8: 124,638,627 (GRCm39)	900	probably null	Het
Nutm2	A	T	13: 50,623,989 (GRCm39)	I229F	probably benign	Het
Or6f1	G	A	7: 85,970,989 (GRCm39)	T57M	probably damaging	Het
Phkb	T	C	8: 86,745,156 (GRCm39)	V611A	possibly damaging	Het
Polg2	A	T	11: 106,670,208 (GRCm39)	Y21N	probably benign	Het
Prss28	T	A	17: 25,528,627 (GRCm39)	I23N	probably benign	Het
Ptprz1	G	A	6: 23,030,661 (GRCm39)	V1856I	probably benign	Het
Slc22a22	A	T	15: 57,108,237 (GRCm39)	I526N	probably damaging	Het
Slc24a4	T	C	12: 102,180,133 (GRCm39)	F68S	probably damaging	Het
Slc37a3	A	G	6: 39,322,274 (GRCm39)	S377P	probably damaging	Het
Smoc2	T	C	17: 14,545,896 (GRCm39)	S62P	probably damaging	Het
Sox4	A	G	13: 29,136,911 (GRCm39)	S32P	probably damaging	Het
Stxbp2	A	T	8: 3,689,541 (GRCm39)	Q426L		Het
Synrg	T	G	11: 83,910,410 (GRCm39)	S937A	probably benign	Het
Tbr1	C	A	2: 61,642,196 (GRCm39)	T487K	possibly damaging	Het
Tll2	T	C	19: 41,195,012 (GRCm39)	T25A	probably benign	Het
Trim31	T	C	17: 37,210,875 (GRCm39)	F169S	probably benign	Het
Tspear	T	C	10: 77,665,463 (GRCm39)	F83S	probably benign	Het
Ubr5	C	A	15: 38,041,123 (GRCm39)	A254S		Het
Ubtfl1	A	G	9: 18,321,459 (GRCm39)	E329G	probably benign	Het
Vmn2r45	A	G	7: 8,474,881 (GRCm39)	W716R	probably damaging	Het
Vmn2r67	T	C	7: 84,799,895 (GRCm39)	M448V	probably damaging	Het
Wwc2	T	G	8: 48,336,579 (GRCm39)	I228L	possibly damaging	Het
Zbtb20	T	C	16: 43,430,857 (GRCm39)	V383A	probably benign	Het

Other mutations in Tro

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00772:Tro	APN	X	149,438,321 (GRCm39)	missense	probably benign	0.45
IGL00818:Tro	APN	X	149,431,357 (GRCm39)	missense	probably damaging	1.00
IGL03170:Tro	APN	X	149,438,556 (GRCm39)	missense	probably benign	0.36
R0022:Tro	UTSW	X	149,430,508 (GRCm39)	intron	probably benign
R0049:Tro	UTSW	X	149,437,565 (GRCm39)	missense	possibly damaging	0.56
R1378:Tro	UTSW	X	149,438,567 (GRCm39)	missense	probably damaging	1.00
R2228:Tro	UTSW	X	149,438,477 (GRCm39)	missense	probably benign	0.17
R3080:Tro	UTSW	X	149,438,198 (GRCm39)	missense	probably benign	0.09
R3437:Tro	UTSW	X	149,429,252 (GRCm39)	intron	probably benign
R3715:Tro	UTSW	X	149,437,230 (GRCm39)	missense	probably damaging	1.00
R3783:Tro	UTSW	X	149,438,048 (GRCm39)	missense	possibly damaging	0.83
R3787:Tro	UTSW	X	149,438,048 (GRCm39)	missense	possibly damaging	0.83
R3840:Tro	UTSW	X	149,429,198 (GRCm39)	intron	probably benign
R4001:Tro	UTSW	X	149,438,198 (GRCm39)	missense	probably benign	0.09
R5449:Tro	UTSW	X	149,428,966 (GRCm39)	intron	probably benign
R7112:Tro	UTSW	X	149,428,852 (GRCm39)	intron	probably benign
R7909:Tro	UTSW	X	149,431,620 (GRCm39)	intron	probably benign
R8812:Tro	UTSW	X	149,438,555 (GRCm39)	missense	unknown
R8813:Tro	UTSW	X	149,438,555 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TGAAGCCTGACTGATCTGGG -3'
(R):5'- ACAGGGAAGAGGAAACTTATCTATCTC -3'

Sequencing Primer
(F):5'- CCTGACTGATCTGGGTGAAC -3'
(R):5'- GAGGAAACTTATCTATCTCTTGCTCC -3'

Posted On

2021-04-30