Mutagenetix > Incidental Mutation

Incidental Mutation 'R8815:Mitd1'

672638

Institutional Source

Beutler Lab

Gene Symbol

Mitd1

Ensembl Gene

ENSMUSG00000026088

Gene Name

MIT, microtubule interacting and transport, domain containing 1

Synonyms

1500032H18Rik

MMRRC Submission

068650-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.328) question?

Stock #

R8815 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

37913882-37929492 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 37929315 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 26 (D26G)

Ref Sequence

ENSEMBL: ENSMUSP00000027257 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027256] [ENSMUST00000027257] [ENSMUST00000139725] [ENSMUST00000160082] [ENSMUST00000193673] [ENSMUST00000194857] [ENSMUST00000195373]

AlphaFold

Q8VDV8

PDB Structure

Solution structure of mouse MIT domain [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000027256

SMART Domains

Protein: ENSMUSP00000027256
Gene: ENSMUSG00000026087

Domain	Start	End	E-Value	Type
Pfam:Ribosomal_L30	67	117	8e-15	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000027257
AA Change: D26G

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000027257
Gene: ENSMUSG00000026088
AA Change: D26G

Domain	Start	End	E-Value	Type
MIT	8	86	4.27e-17	SMART
Pfam:MIT_C	100	242	4.3e-62	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000139725
AA Change: D26G

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000123009
Gene: ENSMUSG00000026088
AA Change: D26G

Domain	Start	End	E-Value	Type
MIT	8	86	4.27e-17	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000160082

Predicted Effect

probably benign
Transcript: ENSMUST00000193673

SMART Domains

Protein: ENSMUSP00000141654
Gene: ENSMUSG00000026087

Domain	Start	End	E-Value	Type
Pfam:Ribosomal_L30	66	117	6.5e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000194857

SMART Domains

Protein: ENSMUSP00000142168
Gene: ENSMUSG00000026087

Domain	Start	End	E-Value	Type
Pfam:Ribosomal_L30	66	117	1.3e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000195373

SMART Domains

Protein: ENSMUSP00000141693
Gene: ENSMUSG00000026087

Domain	Start	End	E-Value	Type
Pfam:Ribosomal_L30	66	117	6.5e-12	PFAM

Meta Mutation Damage Score

0.6677

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.8%
20x: 99.3%

Validation Efficiency

99% (70/71)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Abscission, the separation of daughter cells at the end of cytokinesis, is effected by endosomal sorting complexes required for transport III (ESCRT-III). The protein encoded by this gene functions as a homodimer, with the N-termini binding to a subset of ESCRT-III subunits and the C-termini binding to membranes. The encoded protein regulates ESCRT-III activity and is required for proper cytokinesis. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2016]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700066M21Rik	A	T	1: 57,421,943 (GRCm39)	Q106H	probably damaging	Het
Acad9	T	C	3: 36,139,590 (GRCm39)	C397R	probably damaging	Het
Ankfn1	T	G	11: 89,282,602 (GRCm39)	R348S	probably damaging	Het
Ankrd61	A	G	5: 143,831,336 (GRCm39)	C28R	probably benign	Het
Ano5	C	T	7: 51,194,548 (GRCm39)	R94*	probably null	Het
Apela	A	T	8: 65,489,590 (GRCm39)	F10I	unknown	Het
Arhgap31	T	C	16: 38,429,790 (GRCm39)	S362G	probably benign	Het
Arhgef18	C	A	8: 3,430,410 (GRCm39)	H94Q	probably benign	Het
Astn2	A	T	4: 65,830,834 (GRCm39)	L585Q	possibly damaging	Het
Atf3	G	T	1: 190,909,564 (GRCm39)	A35D	probably benign	Het
Atp10b	A	T	11: 43,093,978 (GRCm39)	R507S	possibly damaging	Het
Brip1	A	C	11: 86,080,598 (GRCm39)	V156G	probably benign	Het
Ccdc27	T	A	4: 154,111,205 (GRCm39)	M636L	probably benign	Het
Ceacam5	T	A	7: 17,493,285 (GRCm39)	N769K	possibly damaging	Het
Cklf	C	T	8: 104,977,560 (GRCm39)		probably benign	Het
Cpeb4	G	A	11: 31,870,546 (GRCm39)	V474M	probably damaging	Het
Dip2c	T	A	13: 9,673,834 (GRCm39)	C1091*	probably null	Het
Eef1akmt4	T	A	16: 20,437,288 (GRCm39)	I210N	possibly damaging	Het
Fbxo38	A	T	18: 62,666,587 (GRCm39)	H195Q	probably damaging	Het
Fbxw14	G	A	9: 109,105,305 (GRCm39)	R287*	probably null	Het
Fes	A	G	7: 80,033,619 (GRCm39)	S211P	possibly damaging	Het
Fry	G	T	5: 150,317,603 (GRCm39)	R861L	possibly damaging	Het
Galnt12	A	G	4: 47,113,908 (GRCm39)		probably benign	Het
Gm14226	G	A	2: 154,866,538 (GRCm39)	W165*	probably null	Het
Gm40460	GCAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAG	GCAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAG	7: 141,794,171 (GRCm39)		probably benign	Het
Gm40460	CACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	CACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	7: 141,794,554 (GRCm39)		probably benign	Het
Gprc6a	A	G	10: 51,497,079 (GRCm39)	V488A	probably benign	Het
Haus8	A	T	8: 71,705,910 (GRCm39)		probably benign	Het
Helb	A	T	10: 119,948,692 (GRCm39)	C26S	possibly damaging	Het
Icam1	A	T	9: 20,937,862 (GRCm39)	I300F	probably benign	Het
Ip6k1	A	G	9: 107,918,211 (GRCm39)	N181S	probably benign	Het
Itga2b	C	A	11: 102,351,687 (GRCm39)	R546L	possibly damaging	Het
Kif27	A	T	13: 58,476,818 (GRCm39)	Y611N	probably damaging	Het
Lpcat2	A	G	8: 93,640,979 (GRCm39)	I475V	possibly damaging	Het
Lrit2	A	G	14: 36,794,487 (GRCm39)	K517R	probably benign	Het
Lrp1b	A	T	2: 40,555,171 (GRCm39)	I4085N		Het
Lrrc32	T	A	7: 98,148,242 (GRCm39)	S341T	probably damaging	Het
Lrrn2	T	A	1: 132,866,831 (GRCm39)	I632K	possibly damaging	Het
Mettl22	A	G	16: 8,300,178 (GRCm39)	Q194R	probably benign	Het
Mfhas1	T	A	8: 36,057,394 (GRCm39)	V623E	probably damaging	Het
Myo1a	C	T	10: 127,546,043 (GRCm39)	T222M	probably benign	Het
Naf1	A	G	8: 67,317,333 (GRCm39)	K275R	possibly damaging	Het
Nf1	T	C	11: 79,332,491 (GRCm39)	L765P	probably damaging	Het
Or12k7	G	T	2: 36,958,429 (GRCm39)	M37I	probably benign	Het
Or52a5	A	G	7: 103,427,063 (GRCm39)	L163P	possibly damaging	Het
Or5ac16	T	A	16: 59,022,264 (GRCm39)	H175L	possibly damaging	Het
Or9r3	T	A	10: 129,947,808 (GRCm39)	I284F	probably damaging	Het
Pappa	A	G	4: 65,099,347 (GRCm39)	H622R	probably benign	Het
Pcdhb4	A	T	18: 37,442,055 (GRCm39)	Y455F	probably damaging	Het
Pepd	A	G	7: 34,671,116 (GRCm39)	Y220C	probably damaging	Het
Pias3	T	C	3: 96,607,381 (GRCm39)	I172T	probably damaging	Het
Polq	T	A	16: 36,853,893 (GRCm39)	H415Q	probably damaging	Het
Pp2d1	A	T	17: 53,814,897 (GRCm39)	M609K	probably benign	Het
Ppm1m	G	A	9: 106,076,237 (GRCm39)		probably benign	Het
Prss22	T	A	17: 24,215,662 (GRCm39)	T87S	probably benign	Het
Ptprf	C	A	4: 118,095,125 (GRCm39)	V254L	possibly damaging	Het
Ripply3	A	G	16: 94,136,723 (GRCm39)	E128G	possibly damaging	Het
Rrm2	A	C	12: 24,760,470 (GRCm39)	I185L	possibly damaging	Het
Sbsn	T	A	7: 30,454,227 (GRCm39)		probably benign	Het
Sdc3	T	A	4: 130,546,336 (GRCm39)	S232T	probably benign	Het
Slx4	G	C	16: 3,803,458 (GRCm39)	P1119A	probably benign	Het
Smc5	C	T	19: 23,221,422 (GRCm39)	R369Q	probably damaging	Het
Speer4a3	A	G	5: 26,158,191 (GRCm39)	S54P	probably damaging	Het
Spns1	G	A	7: 125,971,593 (GRCm39)	S319F	possibly damaging	Het
Sptbn4	G	A	7: 27,106,657 (GRCm39)	Q924*	probably null	Het
Srcap	G	C	7: 127,158,037 (GRCm39)	D2638H	unknown	Het
Srsf12	T	C	4: 33,226,045 (GRCm39)	S103P	possibly damaging	Het
Tanc1	A	G	2: 59,621,185 (GRCm39)	T335A	possibly damaging	Het
Them4	C	T	3: 94,231,610 (GRCm39)	T149I	probably damaging	Het
Trpc7	T	C	13: 56,970,312 (GRCm39)	Y424C	possibly damaging	Het
Ttn	C	T	2: 76,628,364 (GRCm39)	D14599N	probably damaging	Het
Ttn	A	T	2: 76,698,244 (GRCm39)	L186H		Het
Usp17lc	T	C	7: 103,067,524 (GRCm39)	F273S	probably benign	Het
Vwa5b2	T	C	16: 20,419,516 (GRCm39)	S620P	probably damaging	Het

Other mutations in Mitd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02155:Mitd1	APN	1	37,924,356 (GRCm39)	missense	probably benign	0.44
R4058:Mitd1	UTSW	1	37,920,107 (GRCm39)	missense	probably benign	0.02
R5012:Mitd1	UTSW	1	37,924,374 (GRCm39)	missense	probably benign	0.00
R6976:Mitd1	UTSW	1	37,921,778 (GRCm39)	missense	probably benign	0.00
R7443:Mitd1	UTSW	1	37,920,117 (GRCm39)	missense	probably benign
R7570:Mitd1	UTSW	1	37,929,273 (GRCm39)	missense	probably damaging	1.00
R7655:Mitd1	UTSW	1	37,924,356 (GRCm39)	missense	probably benign	0.44
R7656:Mitd1	UTSW	1	37,924,356 (GRCm39)	missense	probably benign	0.44
R7945:Mitd1	UTSW	1	37,924,346 (GRCm39)	missense	probably damaging	0.97
R8523:Mitd1	UTSW	1	37,918,639 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TCGGTCTATTGCAAAGGCC -3'
(R):5'- TTCACAACGCGCCATAGAAG -3'

Sequencing Primer
(F):5'- CCGTTGTCCTGCAGATTATCAG -3'
(R):5'- CGCGCCATAGAAGACAGCG -3'

Posted On

2021-04-30