Mutagenetix > Incidental Mutation

Incidental Mutation 'R8821:Pcdhb12'

673086

Institutional Source

Beutler Lab

Gene Symbol

Pcdhb12

Ensembl Gene

ENSMUSG00000043458

Gene Name

protocadherin beta 12

Synonyms

Pcdh3, Pcdhb5F, PcdhbL

MMRRC Submission

068654-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.056) question?

Stock #

R8821 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

37568674-37571707 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 37570386 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 511 (M511V)

Ref Sequence

ENSEMBL: ENSMUSP00000050357 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055495] [ENSMUST00000115661] [ENSMUST00000194544]

AlphaFold

Q91Y07

Predicted Effect

probably benign
Transcript: ENSMUST00000055495
AA Change: M511V

PolyPhen 2 Score 0.067 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000050357
Gene: ENSMUSG00000043458
AA Change: M511V

Domain	Start	End	E-Value	Type
CA	53	130	1.67e-1	SMART
CA	154	239	3.69e-23	SMART
CA	263	343	6.56e-29	SMART
CA	366	447	5.9e-22	SMART
CA	471	557	4.24e-23	SMART
CA	587	668	1.01e-11	SMART
Pfam:Cadherin_C_2	685	768	4.8e-26	PFAM
low complexity region	778	790	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000115661

SMART Domains

Protein: ENSMUSP00000111325
Gene: ENSMUSG00000103458

Domain	Start	End	E-Value	Type
CA	20	131	5.3e-2	SMART
CA	155	240	1.51e-19	SMART
CA	264	348	7.6e-25	SMART
CA	372	453	1.42e-24	SMART
CA	477	563	1.42e-24	SMART
CA	594	674	4.12e-12	SMART
low complexity region	706	721	N/A	INTRINSIC
Pfam:Cadherin_tail	796	930	3.9e-58	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000193984

Predicted Effect

probably benign
Transcript: ENSMUST00000194544

SMART Domains

Protein: ENSMUSP00000141847
Gene: ENSMUSG00000102836

Domain	Start	End	E-Value	Type
Blast:CA	18	66	5e-20	BLAST

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (74/74)

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A230072I06Rik	A	T	8: 12,329,688 (GRCm39)	I48L	unknown	Het
Abca8a	A	T	11: 109,949,362 (GRCm39)	I927K	probably damaging	Het
Abcc3	A	C	11: 94,241,787 (GRCm39)	C1415G	probably damaging	Het
Abcf3	C	T	16: 20,369,214 (GRCm39)	R205C	probably damaging	Het
Aldh3a1	A	G	11: 61,107,142 (GRCm39)	Y282C	probably damaging	Het
Alyref	CCCGCGCGGCGGCCTGCACTGCGCCGCCGCGGCCGCCCTGGGAGCCGGCCCTGCCGCG	CCCGCG	11: 120,489,023 (GRCm39)		probably null	Het
Arfgef3	A	G	10: 18,528,491 (GRCm39)	S299P	possibly damaging	Het
Asic2	A	T	11: 81,858,726 (GRCm39)	N95K	probably damaging	Het
Atp2c2	A	G	8: 120,476,033 (GRCm39)		probably null	Het
Btbd18	A	G	2: 84,497,601 (GRCm39)	D413G	probably damaging	Het
C8b	A	G	4: 104,647,874 (GRCm39)	Y355C	probably damaging	Het
Carm1	A	G	9: 21,491,663 (GRCm39)	E244G	probably damaging	Het
Castor2	T	A	5: 134,164,092 (GRCm39)	V96E	possibly damaging	Het
Catsperg1	A	T	7: 28,904,361 (GRCm39)		probably benign	Het
Cish	T	A	9: 107,177,671 (GRCm39)	F116I	probably damaging	Het
Ckmt1	G	A	2: 121,191,302 (GRCm39)		probably benign	Het
Clasrp	C	T	7: 19,320,362 (GRCm39)	R432H	unknown	Het
Clstn1	G	A	4: 149,730,780 (GRCm39)	R837Q	probably benign	Het
Col27a1	A	G	4: 63,143,148 (GRCm39)	T279A	probably benign	Het
Cox10	A	G	11: 63,855,306 (GRCm39)	F325S	probably damaging	Het
Cpne5	T	C	17: 29,430,668 (GRCm39)	I81V	probably benign	Het
Ctps1	A	T	4: 120,424,507 (GRCm39)	S36T	possibly damaging	Het
Dchs2	T	C	3: 83,192,670 (GRCm39)	L1705P	probably benign	Het
Dcstamp	A	G	15: 39,618,185 (GRCm39)	H198R	probably benign	Het
Dhx58	T	A	11: 100,594,806 (GRCm39)	K30M	probably damaging	Het
Dnah1	C	T	14: 31,018,455 (GRCm39)	A1392T	probably benign	Het
Dnah14	C	A	1: 181,619,569 (GRCm39)	Y3964*	probably null	Het
Dnah8	T	C	17: 31,013,712 (GRCm39)	S3818P	probably damaging	Het
Dnmt3b	T	A	2: 153,518,734 (GRCm39)	N632K	probably benign	Het
Drc7	G	A	8: 95,788,845 (GRCm39)	R301Q	probably damaging	Het
Dsg1a	T	C	18: 20,453,365 (GRCm39)	V21A	probably damaging	Het
Dtd1	T	C	2: 144,459,261 (GRCm39)	L95P	probably benign	Het
Efhb	A	T	17: 53,707,772 (GRCm39)		probably benign	Het
Fam186b	T	A	15: 99,178,733 (GRCm39)	M198L	possibly damaging	Het
Fam193a	A	G	5: 34,616,374 (GRCm39)	T850A	probably benign	Het
Fan1	G	A	7: 64,004,249 (GRCm39)	P739L	probably damaging	Het
Flii	A	T	11: 60,616,074 (GRCm39)	N28K	probably benign	Het
Fmo3	T	C	1: 162,796,407 (GRCm39)	Y55C	probably damaging	Het
Gfi1	G	A	5: 107,868,138 (GRCm39)	R377C	probably damaging	Het
Gm9195	C	T	14: 72,717,536 (GRCm39)	E266K	possibly damaging	Het
Hdac1-ps	T	A	17: 78,799,969 (GRCm39)	L320Q	probably damaging	Het
Helz	A	T	11: 107,525,919 (GRCm39)	M825L	probably damaging	Het
Hsd3b9	A	T	3: 98,354,047 (GRCm39)	W151R	probably benign	Het
Ift80	G	A	3: 68,869,583 (GRCm39)	A236V	probably damaging	Het
Il1rn	A	T	2: 24,239,505 (GRCm39)	T134S	possibly damaging	Het
Imp4	T	C	1: 34,483,445 (GRCm39)	M257T	probably benign	Het
Impdh2	T	C	9: 108,441,957 (GRCm39)	L377S	probably damaging	Het
Kcnrg	T	C	14: 61,844,981 (GRCm39)	V7A	possibly damaging	Het
Kdm1b	C	A	13: 47,217,617 (GRCm39)	L359I	possibly damaging	Het
Lima1	T	A	15: 99,704,306 (GRCm39)	T288S	probably benign	Het
Lrrc37	A	T	11: 103,510,470 (GRCm39)	D499E	unknown	Het
Lrrc4c	A	T	2: 97,460,040 (GRCm39)	D222V	possibly damaging	Het
Mybpc3	T	A	2: 90,948,524 (GRCm39)	V4E	probably null	Het
Ncor1	A	T	11: 62,260,234 (GRCm39)	D505E	probably benign	Het
Nell1	A	G	7: 50,476,097 (GRCm39)	S579G	probably damaging	Het
Npc1	T	A	18: 12,333,877 (GRCm39)	M735L	probably benign	Het
Or1j13	G	A	2: 36,369,794 (GRCm39)	T116I	possibly damaging	Het
Or2at4	A	G	7: 99,384,893 (GRCm39)	H181R	possibly damaging	Het
Or4a73	A	G	2: 89,420,880 (GRCm39)	I193T	probably damaging	Het
Peli2	G	A	14: 48,490,130 (GRCm39)	E201K	possibly damaging	Het
Phf3	T	A	1: 30,860,347 (GRCm39)	K828*	probably null	Het
Pih1d1	A	G	7: 44,806,196 (GRCm39)	D44G	possibly damaging	Het
Prag1	A	T	8: 36,613,891 (GRCm39)	T1148S	probably benign	Het
Ptpn18	A	T	1: 34,511,271 (GRCm39)	R338W	probably null	Het
Slc7a6os	A	T	8: 106,937,189 (GRCm39)	D90E	probably benign	Het
Sp7	T	A	15: 102,267,227 (GRCm39)	H211L	possibly damaging	Het
Ssh3	A	G	19: 4,319,053 (GRCm39)	V19A	possibly damaging	Het
Tcp11l2	A	G	10: 84,449,522 (GRCm39)	I496V	probably damaging	Het
Tenm3	C	T	8: 48,729,417 (GRCm39)	A1530T		Het
Tmem232	A	G	17: 65,743,367 (GRCm39)	L308P	probably damaging	Het
Tulp4	A	G	17: 6,189,409 (GRCm39)	N77S	probably damaging	Het
Unc13d	AATGCCTCCCATGCC	AATGCCTCCCATGCCTCCCATGCC	11: 115,958,998 (GRCm39)		probably benign	Het
Usp48	A	T	4: 137,341,080 (GRCm39)	D360V	probably damaging	Het
Vmn2r84	G	A	10: 130,226,968 (GRCm39)	A290V	probably benign	Het
Zfp1007	A	T	5: 109,824,174 (GRCm39)	S425R	probably benign	Het
Zfp512b	T	C	2: 181,228,525 (GRCm39)	N738S	probably benign	Het

Other mutations in Pcdhb12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00233:Pcdhb12	APN	18	37,570,035 (GRCm39)	missense	probably benign	0.44
IGL01309:Pcdhb12	APN	18	37,569,207 (GRCm39)	missense	probably damaging	1.00
IGL01834:Pcdhb12	APN	18	37,570,692 (GRCm39)	missense	probably damaging	1.00
IGL01893:Pcdhb12	APN	18	37,570,263 (GRCm39)	missense	probably benign	0.01
IGL02617:Pcdhb12	APN	18	37,570,099 (GRCm39)	missense	probably benign	0.43
R0238:Pcdhb12	UTSW	18	37,569,780 (GRCm39)	missense	probably benign	0.00
R0238:Pcdhb12	UTSW	18	37,569,780 (GRCm39)	missense	probably benign	0.00
R0309:Pcdhb12	UTSW	18	37,569,174 (GRCm39)	missense	probably benign
R0392:Pcdhb12	UTSW	18	37,570,011 (GRCm39)	missense	possibly damaging	0.60
R0494:Pcdhb12	UTSW	18	37,571,148 (GRCm39)	missense	probably benign
R0531:Pcdhb12	UTSW	18	37,570,371 (GRCm39)	missense	probably damaging	1.00
R0571:Pcdhb12	UTSW	18	37,570,261 (GRCm39)	missense	probably damaging	1.00
R0737:Pcdhb12	UTSW	18	37,570,762 (GRCm39)	missense	probably damaging	1.00
R0882:Pcdhb12	UTSW	18	37,570,375 (GRCm39)	missense	probably damaging	1.00
R1253:Pcdhb12	UTSW	18	37,568,874 (GRCm39)	missense	possibly damaging	0.65
R1300:Pcdhb12	UTSW	18	37,570,450 (GRCm39)	missense	possibly damaging	0.45
R1334:Pcdhb12	UTSW	18	37,569,724 (GRCm39)	missense	probably damaging	0.98
R1424:Pcdhb12	UTSW	18	37,571,132 (GRCm39)	missense	probably benign
R1513:Pcdhb12	UTSW	18	37,570,111 (GRCm39)	missense	probably damaging	1.00
R1654:Pcdhb12	UTSW	18	37,569,754 (GRCm39)	missense	probably damaging	1.00
R1717:Pcdhb12	UTSW	18	37,569,841 (GRCm39)	missense	probably damaging	1.00
R1753:Pcdhb12	UTSW	18	37,569,724 (GRCm39)	missense	probably damaging	0.98
R1774:Pcdhb12	UTSW	18	37,569,495 (GRCm39)	missense	possibly damaging	0.52
R1893:Pcdhb12	UTSW	18	37,570,136 (GRCm39)	missense	probably benign	0.24
R1901:Pcdhb12	UTSW	18	37,570,683 (GRCm39)	missense	possibly damaging	0.67
R2114:Pcdhb12	UTSW	18	37,569,265 (GRCm39)	missense	probably damaging	1.00
R2264:Pcdhb12	UTSW	18	37,569,858 (GRCm39)	missense	probably damaging	0.99
R2915:Pcdhb12	UTSW	18	37,570,693 (GRCm39)	missense	probably damaging	1.00
R3689:Pcdhb12	UTSW	18	37,569,127 (GRCm39)	missense	probably benign	0.01
R3918:Pcdhb12	UTSW	18	37,570,101 (GRCm39)	missense	probably benign
R4621:Pcdhb12	UTSW	18	37,570,213 (GRCm39)	missense	probably benign
R4679:Pcdhb12	UTSW	18	37,570,002 (GRCm39)	missense	probably damaging	1.00
R4709:Pcdhb12	UTSW	18	37,570,548 (GRCm39)	missense	probably benign	0.08
R4904:Pcdhb12	UTSW	18	37,570,909 (GRCm39)	missense	possibly damaging	0.80
R4953:Pcdhb12	UTSW	18	37,569,209 (GRCm39)	missense	probably damaging	1.00
R5091:Pcdhb12	UTSW	18	37,568,907 (GRCm39)	nonsense	probably null
R5130:Pcdhb12	UTSW	18	37,568,877 (GRCm39)	missense	probably benign
R5204:Pcdhb12	UTSW	18	37,569,142 (GRCm39)	missense	probably damaging	0.99
R5361:Pcdhb12	UTSW	18	37,570,099 (GRCm39)	missense	probably damaging	1.00
R5417:Pcdhb12	UTSW	18	37,569,087 (GRCm39)	missense	probably benign	0.00
R5979:Pcdhb12	UTSW	18	37,571,044 (GRCm39)	missense	possibly damaging	0.94
R6117:Pcdhb12	UTSW	18	37,568,695 (GRCm39)	intron	probably benign
R6258:Pcdhb12	UTSW	18	37,569,892 (GRCm39)	missense	probably benign	0.00
R6260:Pcdhb12	UTSW	18	37,569,892 (GRCm39)	missense	probably benign	0.00
R6270:Pcdhb12	UTSW	18	37,569,838 (GRCm39)	missense	possibly damaging	0.68
R6623:Pcdhb12	UTSW	18	37,570,711 (GRCm39)	missense	possibly damaging	0.54
R7288:Pcdhb12	UTSW	18	37,569,068 (GRCm39)	missense	probably benign	0.07
R7733:Pcdhb12	UTSW	18	37,570,089 (GRCm39)	missense	probably damaging	1.00
R7762:Pcdhb12	UTSW	18	37,568,977 (GRCm39)	missense	probably damaging	0.98
R8131:Pcdhb12	UTSW	18	37,570,335 (GRCm39)	missense	possibly damaging	0.91
R8331:Pcdhb12	UTSW	18	37,570,342 (GRCm39)	missense	probably damaging	1.00
R8483:Pcdhb12	UTSW	18	37,570,590 (GRCm39)	missense	possibly damaging	0.86
R8553:Pcdhb12	UTSW	18	37,570,687 (GRCm39)	missense	probably damaging	0.99
R8693:Pcdhb12	UTSW	18	37,570,474 (GRCm39)	missense	probably benign	0.31
R8831:Pcdhb12	UTSW	18	37,570,386 (GRCm39)	missense	probably benign	0.07
R8950:Pcdhb12	UTSW	18	37,570,590 (GRCm39)	missense	probably benign	0.39
R9037:Pcdhb12	UTSW	18	37,569,229 (GRCm39)	missense	probably benign	0.00
R9272:Pcdhb12	UTSW	18	37,570,675 (GRCm39)	missense	probably damaging	1.00
R9782:Pcdhb12	UTSW	18	37,570,393 (GRCm39)	frame shift	probably null

Predicted Primers

PCR Primer
(F):5'- TCCTATACCCTGTTTGTGCAAGAG -3'
(R):5'- TGGTGATCAGGTATCCAGGC -3'

Sequencing Primer
(F):5'- CCTGTTTGTGCAAGAGAACAAC -3'
(R):5'- TGATCAGGTATCCAGGCTCTGC -3'

Posted On

2021-04-30