Mutagenetix > Incidental Mutation

Incidental Mutation 'R8827:Mpped2'

673513

Institutional Source

Beutler Lab

Gene Symbol

Mpped2

Ensembl Gene

ENSMUSG00000016386

Gene Name

metallophosphoesterase domain containing 2

Synonyms

239Fb, 2700082O15Rik

MMRRC Submission

068658-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8827 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

106523614-106698701 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 106691928 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 211 (M211T)

Ref Sequence

ENSEMBL: ENSMUSP00000016530 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016530] [ENSMUST00000111063] [ENSMUST00000125023]

AlphaFold

Q9CZJ0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000016530
AA Change: M211T

PolyPhen 2 Score 0.945 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000016530
Gene: ENSMUSG00000016386
AA Change: M211T

Domain	Start	End	E-Value	Type
Pfam:Metallophos	58	256	3e-13	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000111063
AA Change: M211T

PolyPhen 2 Score 0.945 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000106692
Gene: ENSMUSG00000016386
AA Change: M211T

Domain	Start	End	E-Value	Type
Pfam:Metallophos	58	256	1.5e-10	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000125023
AA Change: M211T

PolyPhen 2 Score 0.945 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000123267
Gene: ENSMUSG00000016386
AA Change: M211T

Domain	Start	End	E-Value	Type
Pfam:Metallophos	58	256	1.7e-10	PFAM

Meta Mutation Damage Score

0.2991

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (75/75)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene likely encodes a metallophosphoesterase. The encoded protein may play a role a brain development. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2009]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts3	T	C	5: 89,839,324 (GRCm39)	I810V	probably benign	Het
Adcy7	T	C	8: 89,036,327 (GRCm39)	F128S	possibly damaging	Het
Ankhd1	C	T	18: 36,757,633 (GRCm39)	Q188*	probably null	Het
Asxl2	A	T	12: 3,550,501 (GRCm39)	I748L	probably benign	Het
Atp8b2	T	C	3: 89,853,307 (GRCm39)	N70S		Het
Bmp1	A	G	14: 70,728,082 (GRCm39)	Y616H	probably damaging	Het
Brap	T	A	5: 121,810,261 (GRCm39)	D248E	probably benign	Het
Ccdc13	G	A	9: 121,645,765 (GRCm39)	S294L	probably benign	Het
Cdkl1	T	C	12: 69,794,123 (GRCm39)	Y338C	probably benign	Het
Cfap54	A	T	10: 92,774,110 (GRCm39)	S1993T	unknown	Het
Chl1	G	T	6: 103,670,111 (GRCm39)	M500I	probably benign	Het
Cntn3	G	C	6: 102,246,094 (GRCm39)	L352V	probably benign	Het
Cog6	T	C	3: 52,890,535 (GRCm39)	D635G	probably benign	Het
Col22a1	C	A	15: 71,774,665 (GRCm39)		probably null	Het
Cyp3a16	A	T	5: 145,387,008 (GRCm39)	D327E	probably benign	Het
D6Ertd527e	A	T	6: 87,088,226 (GRCm39)	S130C	unknown	Het
Dhodh	T	C	8: 110,334,928 (GRCm39)		probably benign	Het
Dync2li1	C	T	17: 84,955,079 (GRCm39)	S246L	possibly damaging	Het
Eif3c	A	T	7: 126,157,894 (GRCm39)	F316Y	probably damaging	Het
Esp34	A	T	17: 38,865,091 (GRCm39)		probably benign	Het
Fam98a	T	C	17: 75,851,824 (GRCm39)	M86V	possibly damaging	Het
Gm29394	G	T	15: 57,932,717 (GRCm39)	Q7K	probably damaging	Het
Gtf2i	C	T	5: 134,269,096 (GRCm39)		probably null	Het
H2bc27	C	T	11: 58,839,917 (GRCm39)	P51L	probably benign	Het
Hecw1	A	G	13: 14,438,720 (GRCm39)	Y888H	probably damaging	Het
Kcnma1	A	T	14: 23,417,548 (GRCm39)	W894R	probably damaging	Het
Klhl25	C	A	7: 75,516,391 (GRCm39)	D432E	possibly damaging	Het
Klhl7	G	A	5: 24,363,635 (GRCm39)		probably null	Het
Lamc1	A	T	1: 153,097,424 (GRCm39)	L1540Q	probably damaging	Het
Map3k5	T	A	10: 19,902,003 (GRCm39)	V358E	probably damaging	Het
Map4k5	C	T	12: 69,903,635 (GRCm39)	D57N	possibly damaging	Het
Nat9	T	C	11: 115,075,339 (GRCm39)	T101A	probably benign	Het
Nprl3	A	T	11: 32,184,742 (GRCm39)	F447L	probably benign	Het
Nup50l	G	T	6: 96,142,293 (GRCm39)	N250K	probably benign	Het
Or4p22	T	C	2: 88,317,165 (GRCm39)	S30P	probably damaging	Het
Or5h24	G	A	16: 58,919,061 (GRCm39)	T98I	unknown	Het
Or5w16	C	T	2: 87,576,777 (GRCm39)	P79L	possibly damaging	Het
Orc3	A	T	4: 34,605,569 (GRCm39)	F104Y	probably benign	Het
Pcdha6	T	A	18: 37,102,802 (GRCm39)	V665E	probably damaging	Het
Pdpk1	T	C	17: 24,307,191 (GRCm39)	D380G	probably benign	Het
Phkg1	T	A	5: 129,893,894 (GRCm39)	E280D	probably benign	Het
Pkdrej	T	A	15: 85,699,732 (GRCm39)	Y2068F	possibly damaging	Het
Plekhg5	A	G	4: 152,191,462 (GRCm39)		probably benign	Het
Plekhh3	G	A	11: 101,058,380 (GRCm39)	P222L	probably damaging	Het
Prdm1	A	T	10: 44,334,476 (GRCm39)	V10E	probably benign	Het
Prdm6	G	T	18: 53,701,267 (GRCm39)	Q513H	probably damaging	Het
Pros1	T	C	16: 62,746,827 (GRCm39)	V593A	probably benign	Het
Radil	T	C	5: 142,493,859 (GRCm39)	H250R	probably damaging	Het
Rasa2	C	T	9: 96,434,403 (GRCm39)	R628Q	probably damaging	Het
Ryr2	T	C	13: 11,572,934 (GRCm39)	E4884G	possibly damaging	Het
Shh	A	G	5: 28,663,125 (GRCm39)	S348P	probably damaging	Het
Slc1a4	A	T	11: 20,270,237 (GRCm39)		probably benign	Het
Slc32a1	A	C	2: 158,453,274 (GRCm39)	D38A	probably damaging	Het
Slc35f3	TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	8: 127,115,780 (GRCm39)		probably benign	Het
Slc45a4	A	T	15: 73,458,316 (GRCm39)	I411N	probably benign	Het
Slc49a4	A	T	16: 35,554,320 (GRCm39)	C274S	probably benign	Het
Slc7a10	C	A	7: 34,897,313 (GRCm39)	S248Y	probably damaging	Het
Smc3	T	A	19: 53,611,085 (GRCm39)	D258E	probably benign	Het
Spata31h1	T	A	10: 82,129,617 (GRCm39)	Q1131L	probably benign	Het
Sphk1	A	G	11: 116,426,590 (GRCm39)	D182G	probably damaging	Het
Srgap3	A	G	6: 112,716,302 (GRCm39)	Y633H	probably damaging	Het
Sspo	T	G	6: 48,434,606 (GRCm39)	F1033V	possibly damaging	Het
Syne2	T	C	12: 76,095,357 (GRCm39)	V488A	probably benign	Het
Tead1	A	C	7: 112,475,449 (GRCm39)	K299N	probably damaging	Het
Tmem150c	A	C	5: 100,240,654 (GRCm39)	S69R	probably damaging	Het
Tnfaip3	T	A	10: 18,880,795 (GRCm39)	K424M	probably damaging	Het
Trib3	A	G	2: 152,180,188 (GRCm39)	V335A	possibly damaging	Het
Ttc39c	G	A	18: 12,828,436 (GRCm39)	V199I	probably benign	Het
Vangl1	A	T	3: 102,070,736 (GRCm39)	F400Y	probably damaging	Het
Vmn2r106	A	T	17: 20,487,868 (GRCm39)	S844T	probably benign	Het
Wwtr1	A	G	3: 57,482,616 (GRCm39)	V77A	probably damaging	Het
Yju2b	T	A	8: 84,986,987 (GRCm39)	Q170L	possibly damaging	Het
Zc3h4	C	A	7: 16,163,123 (GRCm39)	P500T	unknown	Het
Zfand2a	C	T	5: 139,460,607 (GRCm39)		probably null	Het
Zfr2	A	G	10: 81,078,619 (GRCm39)	T284A	probably benign	Het

Other mutations in Mpped2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01068:Mpped2	APN	2	106,695,091 (GRCm39)	missense	probably damaging	1.00
IGL01734:Mpped2	APN	2	106,614,158 (GRCm39)	missense	probably damaging	1.00
IGL03031:Mpped2	APN	2	106,613,968 (GRCm39)	splice site	probably benign
LCD18:Mpped2	UTSW	2	106,551,773 (GRCm39)	intron	probably benign
R1446:Mpped2	UTSW	2	106,614,077 (GRCm39)	missense	possibly damaging	0.92
R1460:Mpped2	UTSW	2	106,575,237 (GRCm39)	unclassified	probably benign
R1857:Mpped2	UTSW	2	106,613,989 (GRCm39)	missense	probably damaging	1.00
R1888:Mpped2	UTSW	2	106,529,790 (GRCm39)	missense	probably benign	0.26
R1888:Mpped2	UTSW	2	106,529,790 (GRCm39)	missense	probably benign	0.26
R1919:Mpped2	UTSW	2	106,697,377 (GRCm39)	missense	probably damaging	1.00
R2073:Mpped2	UTSW	2	106,575,147 (GRCm39)	nonsense	probably null
R2074:Mpped2	UTSW	2	106,575,147 (GRCm39)	nonsense	probably null
R2075:Mpped2	UTSW	2	106,575,147 (GRCm39)	nonsense	probably null
R2295:Mpped2	UTSW	2	106,529,846 (GRCm39)	missense	possibly damaging	0.94
R4720:Mpped2	UTSW	2	106,614,091 (GRCm39)	missense	probably damaging	1.00
R4851:Mpped2	UTSW	2	106,529,724 (GRCm39)	utr 5 prime	probably benign
R5201:Mpped2	UTSW	2	106,529,847 (GRCm39)	missense	possibly damaging	0.94
R6500:Mpped2	UTSW	2	106,691,925 (GRCm39)	missense	probably damaging	1.00
R6603:Mpped2	UTSW	2	106,697,322 (GRCm39)	missense	probably benign	0.06
R6994:Mpped2	UTSW	2	106,529,878 (GRCm39)	missense	possibly damaging	0.83
R7807:Mpped2	UTSW	2	106,575,085 (GRCm39)	missense	possibly damaging	0.73
R8878:Mpped2	UTSW	2	106,575,065 (GRCm39)	missense	probably damaging	0.97
R8932:Mpped2	UTSW	2	106,697,395 (GRCm39)	missense	possibly damaging	0.84
R9024:Mpped2	UTSW	2	106,614,043 (GRCm39)	missense	probably benign	0.12
R9207:Mpped2	UTSW	2	106,697,319 (GRCm39)	missense	probably benign	0.15
Z1177:Mpped2	UTSW	2	106,691,937 (GRCm39)	missense	probably damaging	1.00
Z1177:Mpped2	UTSW	2	106,575,148 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCGCAAACTGTGGGTGAATAC -3'
(R):5'- TGAACACCTGTAAGCCTAGC -3'

Sequencing Primer
(F):5'- TACTCGCGAGAAATGTGACAGTCC -3'
(R):5'- CGGAAGCATTGCTTGCTA -3'

Posted On

2021-07-15