Mutagenetix > Incidental Mutation

Incidental Mutation 'R8833:Spata17'

673960

Institutional Source

Beutler Lab

Gene Symbol

Spata17

Ensembl Gene

ENSMUSG00000026611

Gene Name

spermatogenesis associated 17

Synonyms

4930513F16Rik, 4930504I07Rik, 1700065F16Rik

MMRRC Submission

068661-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R8833 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

186776845-186947662 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 186915436 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 107 (Y107C)

Ref Sequence

ENSEMBL: ENSMUSP00000106570 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027908] [ENSMUST00000110945] [ENSMUST00000183819] [ENSMUST00000183931]

AlphaFold

Q9D552

Predicted Effect

probably damaging
Transcript: ENSMUST00000027908
AA Change: Y107C

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000027908
Gene: ENSMUSG00000026611
AA Change: Y107C

Domain	Start	End	E-Value	Type
IQ	47	69	5.27e0	SMART
IQ	70	92	1.77e-2	SMART
IQ	106	128	1.4e1	SMART
coiled coil region	133	174	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000110945
AA Change: Y107C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000106570
Gene: ENSMUSG00000026611
AA Change: Y107C

Domain	Start	End	E-Value	Type
IQ	47	69	5.27e0	SMART
IQ	70	92	1.77e-2	SMART
IQ	106	128	1.4e1	SMART
coiled coil region	133	174	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000183819
AA Change: Y107C

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000138855
Gene: ENSMUSG00000026611
AA Change: Y107C

Domain	Start	End	E-Value	Type
IQ	47	69	5.27e0	SMART
IQ	70	92	1.77e-2	SMART
IQ	106	128	1.4e1	SMART
coiled coil region	133	174	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000183931

SMART Domains

Protein: ENSMUSP00000139329
Gene: ENSMUSG00000026611

Domain	Start	End	E-Value	Type
low complexity region	39	63	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.5%

Validation Efficiency

100% (53/53)

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Akr1c6	T	A	13: 4,496,377 (GRCm39)	D132E	possibly damaging	Het
Armh4	C	T	14: 50,011,318 (GRCm39)	V130I	probably benign	Het
Atp10b	A	G	11: 43,112,986 (GRCm39)	E844G	probably damaging	Het
Bbx	T	A	16: 50,045,629 (GRCm39)	M311L	probably benign	Het
Bzw2	A	T	12: 36,169,069 (GRCm39)	M153K	probably benign	Het
C1qtnf6	G	T	15: 78,409,574 (GRCm39)	T91K	probably benign	Het
Cdh4	A	G	2: 179,535,828 (GRCm39)	D793G	possibly damaging	Het
Ces4a	A	G	8: 105,858,614 (GRCm39)	I11V	probably benign	Het
Cpne9	T	C	6: 113,281,473 (GRCm39)	L518P	probably damaging	Het
Dip2c	T	A	13: 9,625,519 (GRCm39)		probably null	Het
Fam135b	T	C	15: 71,334,783 (GRCm39)	N804D	probably benign	Het
Frem3	G	A	8: 81,339,401 (GRCm39)	D565N	probably benign	Het
Fscb	T	A	12: 64,519,997 (GRCm39)	T490S	unknown	Het
Fuca1	A	G	4: 135,648,206 (GRCm39)	D31G	probably damaging	Het
Gbp8	G	T	5: 105,166,668 (GRCm39)	N220K	possibly damaging	Het
Gfra2	T	C	14: 71,163,337 (GRCm39)	F207L	probably damaging	Het
Grap2	A	G	15: 80,522,684 (GRCm39)	N70S	probably benign	Het
Ifna13	C	A	4: 88,562,157 (GRCm39)	E156*	probably null	Het
Jmjd1c	G	A	10: 67,054,162 (GRCm39)	R22H	probably benign	Het
Macf1	A	G	4: 123,365,134 (GRCm39)	V3209A	probably benign	Het
Muc5b	A	G	7: 141,412,105 (GRCm39)	T1684A	unknown	Het
Naip5	T	A	13: 100,359,442 (GRCm39)	E598V	probably damaging	Het
Niban1	T	A	1: 151,520,681 (GRCm39)	V125E	probably damaging	Het
Notch1	G	A	2: 26,371,615 (GRCm39)	T278I	probably damaging	Het
Or4d10c	A	G	19: 12,065,643 (GRCm39)	V171A	possibly damaging	Het
Or4k5	A	T	14: 50,385,823 (GRCm39)	C169*	probably null	Het
Or52z13	T	G	7: 103,247,444 (GRCm39)	F307C	possibly damaging	Het
Or5k14	A	T	16: 58,692,959 (GRCm39)	Y185N	probably damaging	Het
Orm1	A	T	4: 63,262,938 (GRCm39)	E35V	probably damaging	Het
Pak1	T	A	7: 97,503,839 (GRCm39)	I58N	possibly damaging	Het
Pard3b	A	G	1: 62,384,158 (GRCm39)	E841G	probably benign	Het
Pcdhb9	G	T	18: 37,534,468 (GRCm39)	R154I	probably benign	Het
Pdpr	G	A	8: 111,852,312 (GRCm39)	V560I	probably damaging	Het
Pkdcc	T	C	17: 83,531,355 (GRCm39)	F455L	probably damaging	Het
Potefam3c	A	T	8: 69,881,982 (GRCm39)	D331E	probably benign	Het
Pus7l	A	T	15: 94,438,143 (GRCm39)	F234Y	probably damaging	Het
Rab3gap2	T	A	1: 184,990,722 (GRCm39)	L632Q	probably damaging	Het
Rarb	T	A	14: 16,819,015 (GRCm38)		probably benign	Het
Ro60	T	A	1: 143,641,517 (GRCm39)	K315*	probably null	Het
Rom1	A	T	19: 8,905,471 (GRCm39)	H236Q	possibly damaging	Het
Secisbp2	T	C	13: 51,819,352 (GRCm39)	S311P	probably benign	Het
Slc26a1	T	C	5: 108,820,182 (GRCm39)	D355G	probably benign	Het
Slc28a3	C	T	13: 58,707,077 (GRCm39)	A574T	probably damaging	Het
Sox11	A	G	12: 27,392,313 (GRCm39)	V32A	possibly damaging	Het
Speer1a	C	A	5: 11,394,205 (GRCm39)	Y104*	probably null	Het
Stxbp5l	T	C	16: 37,024,814 (GRCm39)	T595A	probably benign	Het
Syt11	T	C	3: 88,655,149 (GRCm39)	D78G	probably damaging	Het
Tatdn2	T	G	6: 113,684,348 (GRCm39)	I674S	probably damaging	Het
Tex14	T	A	11: 87,383,878 (GRCm39)	S189R	probably benign	Het
Tln2	C	A	9: 67,128,693 (GRCm39)	E1465D	possibly damaging	Het
Tor3a	T	C	1: 156,483,373 (GRCm39)	T350A	probably benign	Het
Ttr	T	G	18: 20,799,550 (GRCm39)	V36G	probably damaging	Het
Vmn1r129	A	T	7: 21,095,205 (GRCm39)	H4Q	probably null	Het
Vmn1r32	A	G	6: 66,530,623 (GRCm39)	M51T	possibly damaging	Het
Zfp141	T	C	7: 42,125,687 (GRCm39)	T262A	possibly damaging	Het
Zfp980	T	A	4: 145,427,596 (GRCm39)	N108K	probably benign	Het

Other mutations in Spata17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00662:Spata17	APN	1	186,849,536 (GRCm39)	missense	probably benign	0.34
IGL02101:Spata17	APN	1	186,849,657 (GRCm39)	missense	probably benign	0.40
IGL02268:Spata17	APN	1	186,872,595 (GRCm39)	missense	probably damaging	0.97
IGL02406:Spata17	APN	1	186,849,458 (GRCm39)	critical splice donor site	probably null
IGL02429:Spata17	APN	1	186,872,631 (GRCm39)	missense	possibly damaging	0.66
IGL03333:Spata17	APN	1	186,872,667 (GRCm39)	start codon destroyed	probably null
R0147:Spata17	UTSW	1	186,844,798 (GRCm39)	missense	probably damaging	1.00
R0148:Spata17	UTSW	1	186,844,798 (GRCm39)	missense	probably damaging	1.00
R0269:Spata17	UTSW	1	186,830,069 (GRCm39)	missense	probably benign	0.02
R1521:Spata17	UTSW	1	186,926,191 (GRCm39)	missense	probably damaging	0.96
R1620:Spata17	UTSW	1	186,915,412 (GRCm39)	intron	probably benign
R2017:Spata17	UTSW	1	186,780,650 (GRCm39)	missense	possibly damaging	0.73
R2113:Spata17	UTSW	1	186,830,108 (GRCm39)	missense	possibly damaging	0.93
R2251:Spata17	UTSW	1	186,780,670 (GRCm39)	missense	possibly damaging	0.96
R4260:Spata17	UTSW	1	186,780,677 (GRCm39)	missense	possibly damaging	0.53
R4572:Spata17	UTSW	1	186,926,193 (GRCm39)	missense	possibly damaging	0.91
R4894:Spata17	UTSW	1	186,872,643 (GRCm39)	missense	probably benign	0.00
R4910:Spata17	UTSW	1	186,926,208 (GRCm39)	missense	probably damaging	0.98
R6277:Spata17	UTSW	1	186,926,151 (GRCm39)	nonsense	probably null
R7200:Spata17	UTSW	1	186,844,700 (GRCm39)	missense	probably benign	0.00
R7621:Spata17	UTSW	1	186,854,833 (GRCm39)	splice site	probably null
R7735:Spata17	UTSW	1	186,872,577 (GRCm39)	missense	unknown
R7990:Spata17	UTSW	1	186,872,592 (GRCm39)	missense	unknown
R8115:Spata17	UTSW	1	186,849,653 (GRCm39)	missense	probably damaging	1.00
R9288:Spata17	UTSW	1	186,844,756 (GRCm39)	missense	possibly damaging	0.85
R9481:Spata17	UTSW	1	186,844,756 (GRCm39)	missense	possibly damaging	0.85
R9588:Spata17	UTSW	1	186,849,471 (GRCm39)	missense	possibly damaging	0.91
V7732:Spata17	UTSW	1	186,780,677 (GRCm39)	missense	possibly damaging	0.53
X0027:Spata17	UTSW	1	186,926,156 (GRCm39)	missense	probably damaging	0.97
Z1177:Spata17	UTSW	1	186,872,626 (GRCm39)	nonsense	probably null
Z1177:Spata17	UTSW	1	186,849,525 (GRCm39)	missense	possibly damaging	0.86

Predicted Primers

PCR Primer
(F):5'- CTTGGCACAGCTAACTTTCTAAC -3'
(R):5'- CCATTAGCTCTGAGTTTGACTACC -3'

Sequencing Primer
(F):5'- GGCACAGCTAACTTTCTAACTAGTG -3'
(R):5'- GCTTGCATTATGTATTAGGAAGCC -3'

Posted On

2021-07-15