Incidental Mutation 'R8845:Nsd2'
ID 674643
Institutional Source Beutler Lab
Gene Symbol Nsd2
Ensembl Gene ENSMUSG00000057406
Gene Name nuclear receptor binding SET domain protein 2
Synonyms 9430010A17Rik, 5830445G22Rik, D030027O06Rik, D930023B08Rik, C130020C13Rik, Whsc1, Whsc1l
MMRRC Submission 068734-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.843) question?
Stock # R8845 (G1)
Quality Score 225.009
Status Not validated
Chromosome 5
Chromosomal Location 33978069-34055319 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 34039885 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Cysteine to Arginine at position 846 (C846R)
Ref Sequence ENSEMBL: ENSMUSP00000067205 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000058096] [ENSMUST00000066854] [ENSMUST00000075812] [ENSMUST00000137191] [ENSMUST00000139845] [ENSMUST00000202525]
AlphaFold Q8BVE8
Predicted Effect probably damaging
Transcript: ENSMUST00000058096
AA Change: C845R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000058940
Gene: ENSMUSG00000057406
AA Change: C845R

DomainStartEndE-ValueType
low complexity region 12 23 N/A INTRINSIC
PWWP 220 285 3.84e-15 SMART
low complexity region 397 408 N/A INTRINSIC
HMG 452 522 7.64e-9 SMART
low complexity region 532 545 N/A INTRINSIC
low complexity region 629 643 N/A INTRINSIC
PHD 669 711 1.36e-6 SMART
RING 670 710 1.5e1 SMART
PHD 716 763 6.81e-1 SMART
RING 717 762 5.25e-2 SMART
PHD 833 873 2.35e-10 SMART
PWWP 878 940 2.67e-23 SMART
AWS 1011 1062 3.74e-27 SMART
SET 1063 1186 4.48e-43 SMART
PostSET 1187 1203 7.56e-4 SMART
low complexity region 1215 1236 N/A INTRINSIC
PHD 1241 1284 1.98e-8 SMART
low complexity region 1347 1360 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000066854
AA Change: C846R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000067205
Gene: ENSMUSG00000057406
AA Change: C846R

DomainStartEndE-ValueType
low complexity region 12 23 N/A INTRINSIC
PWWP 220 285 3.84e-15 SMART
low complexity region 397 408 N/A INTRINSIC
HMG 452 522 7.64e-9 SMART
low complexity region 532 545 N/A INTRINSIC
low complexity region 630 644 N/A INTRINSIC
PHD 670 712 1.36e-6 SMART
RING 671 711 1.5e1 SMART
PHD 717 764 6.81e-1 SMART
RING 718 763 5.25e-2 SMART
PHD 834 874 2.35e-10 SMART
PWWP 879 941 2.67e-23 SMART
AWS 1012 1063 3.74e-27 SMART
SET 1064 1187 4.48e-43 SMART
PostSET 1188 1204 7.56e-4 SMART
low complexity region 1216 1237 N/A INTRINSIC
PHD 1242 1285 1.98e-8 SMART
low complexity region 1348 1361 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000075812
AA Change: C846R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000075210
Gene: ENSMUSG00000057406
AA Change: C846R

DomainStartEndE-ValueType
low complexity region 12 23 N/A INTRINSIC
PWWP 220 285 3.84e-15 SMART
low complexity region 397 408 N/A INTRINSIC
HMG 452 522 7.64e-9 SMART
low complexity region 532 545 N/A INTRINSIC
low complexity region 630 644 N/A INTRINSIC
PHD 670 712 1.36e-6 SMART
RING 671 711 1.5e1 SMART
PHD 717 764 6.81e-1 SMART
RING 718 763 5.25e-2 SMART
PHD 834 874 2.35e-10 SMART
PWWP 879 941 2.67e-23 SMART
AWS 1012 1063 3.74e-27 SMART
SET 1064 1187 4.48e-43 SMART
PostSET 1188 1204 7.56e-4 SMART
low complexity region 1216 1237 N/A INTRINSIC
PHD 1242 1285 1.98e-8 SMART
low complexity region 1348 1361 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000137191
SMART Domains Protein: ENSMUSP00000122310
Gene: ENSMUSG00000057406

DomainStartEndE-ValueType
low complexity region 12 23 N/A INTRINSIC
Pfam:PWWP 220 332 4.9e-26 PFAM
low complexity region 397 408 N/A INTRINSIC
HMG 452 522 7.64e-9 SMART
low complexity region 532 545 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000139845
SMART Domains Protein: ENSMUSP00000123460
Gene: ENSMUSG00000057406

DomainStartEndE-ValueType
low complexity region 12 23 N/A INTRINSIC
Pfam:PWWP 220 332 4.9e-26 PFAM
low complexity region 397 408 N/A INTRINSIC
HMG 452 522 7.64e-9 SMART
low complexity region 532 545 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000141416
SMART Domains Protein: ENSMUSP00000117233
Gene: ENSMUSG00000057406

DomainStartEndE-ValueType
Pfam:PWWP 202 314 1.1e-25 PFAM
low complexity region 379 390 N/A INTRINSIC
HMG 434 504 4.7e-9 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000202525
AA Change: C187R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000144255
Gene: ENSMUSG00000057406
AA Change: C187R

DomainStartEndE-ValueType
PHD 11 53 8.5e-9 SMART
RING 12 52 7.3e-2 SMART
PHD 58 105 4.4e-3 SMART
RING 59 104 2.6e-4 SMART
PHD 175 215 1.5e-12 SMART
low complexity region 248 259 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that contains four domains present in other developmental proteins: a PWWP domain, an HMG box, a SET domain, and a PHD-type zinc finger. It is expressed ubiquitously in early development. Wolf-Hirschhorn syndrome (WHS) is a malformation syndrome associated with a hemizygous deletion of the distal short arm of chromosome 4. This gene maps to the 165 kb WHS critical region and has also been involved in the chromosomal translocation t(4;14)(p16.3;q32.3) in multiple myelomas. Alternative splicing of this gene results in multiple transcript variants encoding different isoforms. Some transcript variants are nonsense-mediated mRNA (NMD) decay candidates, hence not represented as reference sequences. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice display reduced fetal size, failed sternum ossification, cleft palate, atrial and ventricular septal defects, stunted growth and postnatal death. Some heterozygotes show severe growth defects, malocclusion, delayed sternum ossification and hypoplasia of the septum secundum. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca14 C T 7: 119,846,428 (GRCm39) P627S probably benign Het
Abca4 G A 3: 121,930,651 (GRCm39) V1383M probably damaging Het
Acer3 A G 7: 97,910,832 (GRCm39) S77P probably damaging Het
Adgrv1 G T 13: 81,629,478 (GRCm39) T3640N possibly damaging Het
Agmo T C 12: 37,294,364 (GRCm39) L104P probably benign Het
Alox12 C A 11: 70,137,877 (GRCm39) G421V probably damaging Het
Atad2 A G 15: 57,989,532 (GRCm39) V182A probably damaging Het
Bnc2 C T 4: 84,194,338 (GRCm39) A929T possibly damaging Het
Bola3 T C 6: 83,335,154 (GRCm39) M83T probably damaging Het
Brca2 T C 5: 150,466,847 (GRCm39) F2204L possibly damaging Het
Cachd1 T C 4: 100,810,343 (GRCm39) V315A probably benign Het
Ccdc154 C A 17: 25,390,138 (GRCm39) N547K probably damaging Het
Ccdc62 C A 5: 124,092,470 (GRCm39) T485K probably benign Het
Cdc40 G A 10: 40,717,790 (GRCm39) T371I possibly damaging Het
Cep112 T C 11: 108,461,193 (GRCm39) F657L probably damaging Het
Cirbp A G 10: 80,005,931 (GRCm39) D62G probably damaging Het
Cntf A C 19: 12,741,664 (GRCm39) S65R probably benign Het
Cxxc4 CGGC CGGCGGGGGC 3: 133,945,912 (GRCm39) probably benign Het
Cyfip1 G T 7: 55,579,834 (GRCm39) G1229V probably benign Het
Cyp4a30b A C 4: 115,315,493 (GRCm39) N238T probably benign Het
Dbx2 G A 15: 95,552,517 (GRCm39) R43C probably benign Het
Efcab3 A T 11: 104,899,787 (GRCm39) I4350F possibly damaging Het
Fbxw13 G T 9: 109,023,833 (GRCm39) F70L possibly damaging Het
Fhod3 A G 18: 25,265,976 (GRCm39) T1555A probably damaging Het
Fnbp4 A G 2: 90,606,368 (GRCm39) M763V probably benign Het
Gdf7 A G 12: 8,348,905 (GRCm39) S131P unknown Het
Gm9938 A T 19: 23,701,941 (GRCm39) E93V unknown Het
Golim4 A T 3: 75,802,272 (GRCm39) M340K probably damaging Het
Gphn A G 12: 78,538,953 (GRCm39) S200G probably benign Het
Hpse T C 5: 100,859,248 (GRCm39) D99G probably benign Het
Iqgap2 A T 13: 95,794,392 (GRCm39) N1193K possibly damaging Het
Jag2 A T 12: 112,883,714 (GRCm39) C256S probably damaging Het
Ldb3 T C 14: 34,258,634 (GRCm39) Y657C probably damaging Het
Lmtk2 T A 5: 144,110,704 (GRCm39) Y475N probably damaging Het
Mep1b A T 18: 21,230,379 (GRCm39) K644* probably null Het
Muc4 A C 16: 32,576,889 (GRCm39) T60P possibly damaging Het
Nckap5 G T 1: 125,909,423 (GRCm39) Q1603K possibly damaging Het
Npy6r C T 18: 44,408,606 (GRCm39) T9I probably benign Het
Oard1 A C 17: 48,721,259 (GRCm39) K64Q probably benign Het
Or4c103 T A 2: 88,513,735 (GRCm39) I114F possibly damaging Het
Or52e19b A T 7: 103,032,357 (GRCm39) V284D probably damaging Het
Or5w8 G T 2: 87,687,545 (GRCm39) V9L probably benign Het
Or6c208 A G 10: 129,224,065 (GRCm39) T188A probably damaging Het
Pkhd1l1 T G 15: 44,368,650 (GRCm39) S823A probably benign Het
Pla2r1 A G 2: 60,259,053 (GRCm39) S1112P possibly damaging Het
Plekho2 T C 9: 65,465,963 (GRCm39) T142A probably damaging Het
Prr35 A T 17: 26,165,823 (GRCm39) V488E probably benign Het
Prrc2b T A 2: 32,102,105 (GRCm39) M726K possibly damaging Het
Prrc2b A T 2: 32,106,162 (GRCm39) K1514I possibly damaging Het
Rin1 A T 19: 5,104,947 (GRCm39) D669V probably damaging Het
Setd1b C T 5: 123,282,310 (GRCm39) A146V unknown Het
Sigmar1 G A 4: 41,741,234 (GRCm39) R7W probably damaging Het
Slain1 C T 14: 103,925,747 (GRCm39) T365I possibly damaging Het
Slc38a2 G A 15: 96,592,900 (GRCm39) T186I probably benign Het
Tas2r130 A T 6: 131,607,642 (GRCm39) V51E probably benign Het
Tgfb1i1 A T 7: 127,851,690 (GRCm39) H332L possibly damaging Het
Trav7n-4 T C 14: 53,328,846 (GRCm39) L15S probably damaging Het
Ttc28 T C 5: 111,372,041 (GRCm39) V861A probably benign Het
Ttn A G 2: 76,632,658 (GRCm39) I14132T probably damaging Het
Ttn T C 2: 76,606,380 (GRCm39) E18143G probably damaging Het
Vmn1r203 C T 13: 22,708,720 (GRCm39) S167L possibly damaging Het
Vmn2r108 A T 17: 20,691,361 (GRCm39) H387Q probably benign Het
Vps33a A T 5: 123,709,538 (GRCm39) probably null Het
Vps50 G A 6: 3,504,926 (GRCm39) V31I probably benign Het
Wdcp A G 12: 4,901,439 (GRCm39) T432A probably benign Het
Wdr36 T A 18: 32,994,098 (GRCm39) Y645* probably null Het
Other mutations in Nsd2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00391:Nsd2 APN 5 34,013,077 (GRCm39) missense probably damaging 1.00
IGL00420:Nsd2 APN 5 34,040,347 (GRCm39) missense possibly damaging 0.82
IGL01343:Nsd2 APN 5 34,000,922 (GRCm39) missense probably damaging 1.00
IGL01403:Nsd2 APN 5 34,042,722 (GRCm39) splice site probably benign
IGL01446:Nsd2 APN 5 34,018,530 (GRCm39) splice site probably benign
IGL01571:Nsd2 APN 5 34,022,031 (GRCm39) missense probably benign 0.32
IGL01862:Nsd2 APN 5 34,001,080 (GRCm39) missense probably null 1.00
IGL02040:Nsd2 APN 5 34,024,915 (GRCm39) splice site probably benign
IGL02528:Nsd2 APN 5 34,036,395 (GRCm39) unclassified probably benign
IGL02553:Nsd2 APN 5 34,003,542 (GRCm39) missense probably damaging 1.00
IGL02799:Nsd2 APN 5 34,022,132 (GRCm39) splice site probably benign
IGL02932:Nsd2 APN 5 34,037,472 (GRCm39) missense probably damaging 1.00
Badminton UTSW 5 34,039,491 (GRCm39) nonsense probably null
Game UTSW 5 34,042,816 (GRCm39) missense probably damaging 1.00
Match UTSW 5 34,036,454 (GRCm39) missense probably damaging 1.00
Navratilova UTSW 5 34,042,834 (GRCm39) missense probably damaging 0.97
Racquet UTSW 5 34,040,189 (GRCm39) missense probably damaging 1.00
serve UTSW 5 34,036,455 (GRCm39) missense possibly damaging 0.95
Tennis UTSW 5 34,000,857 (GRCm39) missense probably damaging 1.00
R0136:Nsd2 UTSW 5 34,012,880 (GRCm39) missense possibly damaging 0.89
R0372:Nsd2 UTSW 5 34,048,895 (GRCm39) missense probably damaging 0.98
R0521:Nsd2 UTSW 5 34,000,682 (GRCm39) missense probably damaging 1.00
R0548:Nsd2 UTSW 5 34,050,882 (GRCm39) missense probably damaging 1.00
R0726:Nsd2 UTSW 5 34,018,372 (GRCm39) unclassified probably benign
R1018:Nsd2 UTSW 5 34,000,585 (GRCm39) missense probably damaging 1.00
R1638:Nsd2 UTSW 5 34,039,464 (GRCm39) missense possibly damaging 0.87
R1649:Nsd2 UTSW 5 34,011,984 (GRCm39) missense probably damaging 0.98
R1675:Nsd2 UTSW 5 34,018,493 (GRCm39) missense probably benign 0.04
R1900:Nsd2 UTSW 5 34,003,513 (GRCm39) missense probably benign
R2001:Nsd2 UTSW 5 34,000,746 (GRCm39) missense probably damaging 1.00
R2167:Nsd2 UTSW 5 34,040,263 (GRCm39) missense probably damaging 1.00
R2261:Nsd2 UTSW 5 34,042,871 (GRCm39) missense probably damaging 1.00
R2966:Nsd2 UTSW 5 34,003,466 (GRCm39) missense probably benign 0.01
R3931:Nsd2 UTSW 5 34,003,461 (GRCm39) missense probably benign 0.01
R4429:Nsd2 UTSW 5 34,000,546 (GRCm39) missense probably damaging 1.00
R4596:Nsd2 UTSW 5 34,040,262 (GRCm39) missense probably damaging 1.00
R4958:Nsd2 UTSW 5 34,049,366 (GRCm39) missense probably damaging 1.00
R5346:Nsd2 UTSW 5 34,036,480 (GRCm39) missense possibly damaging 0.94
R5957:Nsd2 UTSW 5 34,012,947 (GRCm39) missense probably damaging 1.00
R6054:Nsd2 UTSW 5 34,039,505 (GRCm39) missense probably damaging 1.00
R6124:Nsd2 UTSW 5 34,000,610 (GRCm39) missense probably benign 0.08
R6302:Nsd2 UTSW 5 34,024,921 (GRCm39) missense possibly damaging 0.93
R6390:Nsd2 UTSW 5 34,038,525 (GRCm39) missense probably damaging 1.00
R6496:Nsd2 UTSW 5 34,000,857 (GRCm39) missense probably damaging 1.00
R6828:Nsd2 UTSW 5 34,050,912 (GRCm39) missense probably damaging 0.98
R6925:Nsd2 UTSW 5 34,036,454 (GRCm39) missense probably damaging 1.00
R7148:Nsd2 UTSW 5 34,042,855 (GRCm39) missense possibly damaging 0.57
R7311:Nsd2 UTSW 5 34,049,380 (GRCm39) missense probably damaging 1.00
R7337:Nsd2 UTSW 5 34,042,816 (GRCm39) missense probably damaging 1.00
R7466:Nsd2 UTSW 5 34,039,491 (GRCm39) nonsense probably null
R7567:Nsd2 UTSW 5 34,003,570 (GRCm39) missense probably damaging 0.99
R7704:Nsd2 UTSW 5 34,028,811 (GRCm39) makesense probably null
R7822:Nsd2 UTSW 5 34,000,938 (GRCm39) missense probably damaging 0.97
R7939:Nsd2 UTSW 5 34,012,933 (GRCm39) missense probably benign 0.22
R8127:Nsd2 UTSW 5 34,042,834 (GRCm39) missense probably damaging 0.97
R8485:Nsd2 UTSW 5 34,040,189 (GRCm39) missense probably damaging 1.00
R8782:Nsd2 UTSW 5 34,000,485 (GRCm39) start codon destroyed probably benign
R8783:Nsd2 UTSW 5 34,036,455 (GRCm39) missense possibly damaging 0.95
R9034:Nsd2 UTSW 5 34,037,478 (GRCm39) missense possibly damaging 0.92
R9183:Nsd2 UTSW 5 34,028,796 (GRCm39) missense probably damaging 0.99
R9283:Nsd2 UTSW 5 34,001,058 (GRCm39) missense probably benign 0.34
R9438:Nsd2 UTSW 5 34,000,632 (GRCm39) missense probably damaging 0.99
R9486:Nsd2 UTSW 5 34,018,493 (GRCm39) missense probably benign 0.04
R9792:Nsd2 UTSW 5 34,003,489 (GRCm39) missense possibly damaging 0.89
R9793:Nsd2 UTSW 5 34,003,489 (GRCm39) missense possibly damaging 0.89
R9795:Nsd2 UTSW 5 34,003,489 (GRCm39) missense possibly damaging 0.89
X0020:Nsd2 UTSW 5 34,012,101 (GRCm39) missense probably damaging 1.00
Z1088:Nsd2 UTSW 5 34,013,082 (GRCm39) critical splice donor site probably null
Z1177:Nsd2 UTSW 5 34,012,864 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGTGGCAGTTACAGGCTGAG -3'
(R):5'- CAGGATTCACATATTCTTCAGAGTG -3'

Sequencing Primer
(F):5'- TGAGGGACAGGGCCTAGC -3'
(R):5'- AGGCTTGTACTGCATACC -3'
Posted On 2021-07-15