Mutagenetix > Incidental Mutation

Incidental Mutation 'R8854:Ngly1'

675195

Institutional Source

Beutler Lab

Gene Symbol

Ngly1

Ensembl Gene

ENSMUSG00000021785

Gene Name

N-glycanase 1

Synonyms

PNGase, 1110002C09Rik, Png1

MMRRC Submission

068676-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.916) question?

Stock #

R8854 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

6157837-6220449 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 16281769 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 342 (S342P)

Ref Sequence

ENSEMBL: ENSMUSP00000022310 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022310] [ENSMUST00000223973] [ENSMUST00000224656]

AlphaFold

Q9JI78

PDB Structure

Solution structure of the N-terminal portion of the PUB domain of mouse peptide:N-glycanase [SOLUTION NMR]
The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs [X-RAY DIFFRACTION]
The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs [X-RAY DIFFRACTION]
Crystal structure of intein-tagged mouse PNGase C-terminal domain [X-RAY DIFFRACTION]
Crystal structure of His-tagged mouse PNGase C-terminal domain [X-RAY DIFFRACTION]
Crystal structure of the PUB domain of mouse PNGase [X-RAY DIFFRACTION]
Crystal structure of the mouse p97/PNGase complex [X-RAY DIFFRACTION]
Crystal structure of mouse Peptide N-Glycanase C-terminal domain in complex with mannopentaose [X-RAY DIFFRACTION]

Predicted Effect

probably damaging
Transcript: ENSMUST00000022310
AA Change: S342P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000022310
Gene: ENSMUSG00000021785
AA Change: S342P

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
PUG	30	91	1.83e-22	SMART
TGc	298	353	6.19e-14	SMART
Blast:PAW	376	415	2e-15	BLAST
low complexity region	416	433	N/A	INTRINSIC
Blast:PAW	434	472	3e-15	BLAST
PAW	484	576	1.05e-29	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000223973
AA Change: S216P

PolyPhen 2 Score 0.808 (Sensitivity: 0.84; Specificity: 0.93)

Predicted Effect

probably damaging
Transcript: ENSMUST00000224656
AA Change: S342P

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.4%

Validation Efficiency

100% (64/64)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an enzyme that catalyzes hydrolysis of an N(4)-(acetyl-beta-D-glucosaminyl) asparagine residue to N-acetyl-beta-D-glucosaminylamine and a peptide containing an aspartate residue. The encoded enzyme may play a role in the proteasome-mediated degradation of misfolded glycoproteins. Multiple transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Feb 2009]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit dysregulation of the endoplasmic reticulum (ER)-associated degradation (ERAD) process. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aldh1a1	G	A	19: 20,588,297 (GRCm39)	W29*	probably null	Het
Ankib1	C	A	5: 3,777,489 (GRCm39)	W467L	probably null	Het
Arhgef10	A	G	8: 15,029,798 (GRCm39)		probably null	Het
Arpc1b	C	A	5: 145,060,405 (GRCm39)	R66S	probably benign	Het
Atoh1	A	T	6: 64,706,189 (GRCm39)		probably benign	Het
Bach2	T	A	4: 32,575,263 (GRCm39)	D619E	possibly damaging	Het
Bbs9	T	C	9: 22,490,060 (GRCm39)	I277T	probably damaging	Het
Cadps2	G	A	6: 23,385,507 (GRCm39)	P772S	probably damaging	Het
Cd1d1	T	A	3: 86,905,480 (GRCm39)	D171V	probably damaging	Het
Cfap20dc	A	T	14: 8,518,638 (GRCm38)	S273T	probably damaging	Het
Clca3a2	C	T	3: 144,783,852 (GRCm39)	A588T	possibly damaging	Het
Cps1	A	G	1: 67,200,048 (GRCm39)	K399E	probably damaging	Het
Cpt1a	T	C	19: 3,406,327 (GRCm39)	S98P	probably benign	Het
Cryzl2	A	G	1: 157,286,370 (GRCm39)	K36R	possibly damaging	Het
Cxcl13	T	C	5: 96,104,861 (GRCm39)	L11P	unknown	Het
Dbf4	T	A	5: 8,458,562 (GRCm39)	D151V	probably damaging	Het
Eogt	A	T	6: 97,108,359 (GRCm39)	C227*	probably null	Het
Fermt3	T	A	19: 6,991,310 (GRCm39)	D231V	probably damaging	Het
Il2rb	T	C	15: 78,369,953 (GRCm39)	T229A	probably benign	Het
Ildr1	T	A	16: 36,535,910 (GRCm39)	Y142N	probably damaging	Het
Kcnv2	A	T	19: 27,311,258 (GRCm39)	T542S	probably benign	Het
Kif26b	G	A	1: 178,743,948 (GRCm39)	G1348E	possibly damaging	Het
Lancl1	C	T	1: 67,073,358 (GRCm39)	E42K	possibly damaging	Het
Lrp1	T	A	10: 127,378,968 (GRCm39)	D4010V	probably damaging	Het
Mark2	A	G	19: 7,258,369 (GRCm39)	V640A	probably benign	Het
Megf6	C	T	4: 154,352,469 (GRCm39)	T1276M	probably damaging	Het
Meioc	T	C	11: 102,566,589 (GRCm39)	M735T	probably damaging	Het
Mfsd4b5	C	A	10: 39,846,735 (GRCm39)	V282L	probably damaging	Het
Mlx	T	A	11: 100,981,951 (GRCm39)	V286E		Het
Ms4a18	G	A	19: 10,990,887 (GRCm39)	T69I	probably benign	Het
Muc1	C	T	3: 89,139,412 (GRCm39)	P604L	probably damaging	Het
Net1	G	T	13: 3,934,214 (GRCm39)	D548E	probably benign	Het
Niban1	A	G	1: 151,584,950 (GRCm39)	K516E	probably damaging	Het
Nipbl	A	T	15: 8,330,210 (GRCm39)	I2405N	probably damaging	Het
Nkx2-1	A	T	12: 56,580,206 (GRCm39)	C245S	probably benign	Het
Or52ab7	T	C	7: 102,978,023 (GRCm39)	I110T	probably damaging	Het
Or5p76	T	A	7: 108,122,936 (GRCm39)	I74L	probably benign	Het
Pcare	T	C	17: 72,056,326 (GRCm39)	Y1117C	probably benign	Het
Pcdhgb5	C	T	18: 37,865,501 (GRCm39)	T432I	probably benign	Het
Plpp4	T	A	7: 128,909,362 (GRCm39)	L24*	probably null	Het
Pnma8a	T	C	7: 16,695,104 (GRCm39)	S320P	possibly damaging	Het
Sass6	C	A	3: 116,399,384 (GRCm39)	Q93K	possibly damaging	Het
Sirpb1c	T	C	3: 15,887,308 (GRCm39)	N177S	possibly damaging	Het
Slc22a30	A	G	19: 8,363,754 (GRCm39)		probably null	Het
Snd1	A	G	6: 28,526,968 (GRCm39)	H217R	probably benign	Het
Spata31d1c	C	A	13: 65,183,804 (GRCm39)	Q449K	possibly damaging	Het
Spidr	A	G	16: 15,707,630 (GRCm39)	V889A	probably damaging	Het
Suclg2	A	T	6: 95,572,650 (GRCm39)	V105D	probably damaging	Het
Syne1	A	T	10: 5,078,503 (GRCm39)	M974K	probably benign	Het
Tbrg4	A	T	11: 6,566,691 (GRCm39)	D605E	probably benign	Het
Tcn2	A	G	11: 3,876,074 (GRCm39)	F118S	possibly damaging	Het
Tcstv2b	T	A	13: 120,377,825 (GRCm39)		probably benign	Het
Tfap4	T	C	16: 4,367,238 (GRCm39)	H208R	probably benign	Het
Trf	A	G	9: 103,107,529 (GRCm39)		probably benign	Het
Trpc4	A	T	3: 54,102,122 (GRCm39)	K7*	probably null	Het
Uap1	G	T	1: 169,976,984 (GRCm39)	P405Q	probably damaging	Het
Usp33	C	A	3: 152,073,967 (GRCm39)	T271N	probably benign	Het
Usp42	T	C	5: 143,702,632 (GRCm39)	D663G	possibly damaging	Het
Vmn2r10	T	C	5: 109,144,126 (GRCm39)	D608G	probably benign	Het
Wfdc16	G	A	2: 164,480,486 (GRCm39)	P3L	probably benign	Het
Zfp28	T	C	7: 6,397,938 (GRCm39)	I791T	probably benign	Het
Zfp970	A	T	2: 177,165,088 (GRCm39)	T5S	probably damaging	Het
Zfy1	A	T	Y: 726,501 (GRCm39)	H421Q	possibly damaging	Het

Other mutations in Ngly1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01807:Ngly1	APN	14	16,290,873 (GRCm38)	missense	probably benign	0.14
IGL02199:Ngly1	APN	14	16,290,844 (GRCm38)	missense	probably damaging	0.96
IGL02809:Ngly1	APN	14	16,281,791 (GRCm38)	missense	probably damaging	1.00
IGL02865:Ngly1	APN	14	16,290,939 (GRCm38)	intron	probably benign
IGL03209:Ngly1	APN	14	16,281,831 (GRCm38)	nonsense	probably null
IGL03290:Ngly1	APN	14	16,281,866 (GRCm38)	missense	probably damaging	0.98
IGL02799:Ngly1	UTSW	14	16,260,636 (GRCm38)	missense	probably benign
R0518:Ngly1	UTSW	14	16,290,774 (GRCm38)	nonsense	probably null
R0521:Ngly1	UTSW	14	16,290,774 (GRCm38)	nonsense	probably null
R1612:Ngly1	UTSW	14	16,290,867 (GRCm38)	nonsense	probably null
R1851:Ngly1	UTSW	14	16,260,585 (GRCm38)	missense	probably damaging	1.00
R2060:Ngly1	UTSW	14	16,277,877 (GRCm38)	missense	possibly damaging	0.72
R2424:Ngly1	UTSW	14	16,290,721 (GRCm38)	splice site	probably null
R2696:Ngly1	UTSW	14	16,283,439 (GRCm38)	missense	possibly damaging	0.52
R3834:Ngly1	UTSW	14	16,290,766 (GRCm38)	intron	probably benign
R3883:Ngly1	UTSW	14	16,270,574 (GRCm38)	missense	probably damaging	1.00
R4700:Ngly1	UTSW	14	16,281,809 (GRCm38)	missense	probably benign	0.01
R5160:Ngly1	UTSW	14	16,281,751 (GRCm38)	missense	probably damaging	0.98
R5555:Ngly1	UTSW	14	16,270,508 (GRCm38)	nonsense	probably null
R5603:Ngly1	UTSW	14	16,260,762 (GRCm38)	missense	probably benign	0.01
R5764:Ngly1	UTSW	14	16,260,799 (GRCm38)	missense	probably benign
R5980:Ngly1	UTSW	14	16,270,509 (GRCm38)	missense	possibly damaging	0.85
R6066:Ngly1	UTSW	14	16,294,634 (GRCm38)	missense	probably benign	0.01
R6887:Ngly1	UTSW	14	16,281,836 (GRCm38)	missense	probably benign	0.02
R6943:Ngly1	UTSW	14	16,283,467 (GRCm38)	missense	probably damaging	1.00
R7101:Ngly1	UTSW	14	16,283,445 (GRCm38)	missense	probably damaging	1.00
R7447:Ngly1	UTSW	14	16,290,844 (GRCm38)	missense	probably damaging	1.00
R7748:Ngly1	UTSW	14	16,290,820 (GRCm38)	missense	possibly damaging	0.62
R8123:Ngly1	UTSW	14	16,260,799 (GRCm38)	missense	probably benign
R8482:Ngly1	UTSW	14	16,310,377 (GRCm38)	missense	probably benign	0.00
R9094:Ngly1	UTSW	14	16,280,721 (GRCm38)	missense	probably damaging	1.00
R9349:Ngly1	UTSW	14	16,281,801 (GRCm38)	nonsense	probably null
X0053:Ngly1	UTSW	14	16,254,743 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTGTGCCACAAAATGTTCTTGC -3'
(R):5'- GGGGACACACTGATTCCAATG -3'

Sequencing Primer
(F):5'- ATGTTCTTGCTAATTAACTCGGTG -3'
(R):5'- GCACCCTACCAATGTATGTGG -3'

Posted On

2021-07-15