Incidental Mutation 'R0731:Snx7'
ID67540
Institutional Source Beutler Lab
Gene Symbol Snx7
Ensembl Gene ENSMUSG00000028007
Gene Namesorting nexin 7
Synonyms
MMRRC Submission 038912-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.214) question?
Stock #R0731 (G1)
Quality Score225
Status Validated
Chromosome3
Chromosomal Location117781647-117868936 bp(-) (GRCm38)
Type of Mutationsplice site
DNA Base Change (assembly) T to A at 117829671 bp
ZygosityHeterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000143230 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000029639] [ENSMUST00000167877] [ENSMUST00000198499]
Predicted Effect probably benign
Transcript: ENSMUST00000029639
SMART Domains Protein: ENSMUSP00000029639
Gene: ENSMUSG00000028007

DomainStartEndE-ValueType
low complexity region 38 51 N/A INTRINSIC
PX 85 205 1.55e-22 SMART
coiled coil region 362 391 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000167877
SMART Domains Protein: ENSMUSP00000125804
Gene: ENSMUSG00000028007

DomainStartEndE-ValueType
low complexity region 10 23 N/A INTRINSIC
PX 57 196 3.62e-2 SMART
coiled coil region 279 308 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000169812
SMART Domains Protein: ENSMUSP00000128007
Gene: ENSMUSG00000028007

DomainStartEndE-ValueType
low complexity region 30 43 N/A INTRINSIC
PX 77 197 1.55e-22 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000196421
Predicted Effect probably benign
Transcript: ENSMUST00000198499
SMART Domains Protein: ENSMUSP00000143230
Gene: ENSMUSG00000028007

DomainStartEndE-ValueType
PX 27 147 1.55e-22 SMART
coiled coil region 304 333 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.9%
  • 10x: 97.6%
  • 20x: 95.5%
Validation Efficiency 97% (73/75)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the sorting nexin family. Members of this family contain a phox (PX) domain, which is a phosphoinositide binding domain, and are involved in intracellular trafficking. This protein does not contain a coiled coil region like some family members, and its exact function is unknown. Alternative splicing results in multiple transcript variants. A related pseudogene has been identified on chromosome 11. [provided by RefSeq, Jun 2010]
Allele List at MGI
Other mutations in this stock
Total: 73 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930430F08Rik T C 10: 100,586,203 T66A probably damaging Het
4933406M09Rik A C 1: 134,389,975 M162L probably benign Het
Acsm3 A T 7: 119,768,024 R27* probably null Het
Actg1 A G 11: 120,346,949 F255S probably damaging Het
Ahdc1 T A 4: 133,062,951 V501E possibly damaging Het
Alpk2 A T 18: 65,305,390 D1444E probably damaging Het
Btaf1 T G 19: 36,997,495 probably null Het
Cacnb2 A G 2: 14,985,706 H489R possibly damaging Het
Ccdc162 C A 10: 41,579,143 K398N probably damaging Het
Cd79b G T 11: 106,312,433 S145R probably damaging Het
Cdh11 T A 8: 102,668,019 N264Y probably damaging Het
Celsr1 T C 15: 85,901,597 D2892G probably benign Het
Chuk A G 19: 44,103,766 probably benign Het
Clk3 T C 9: 57,751,126 probably benign Het
Dcaf8 A T 1: 172,172,509 D78V possibly damaging Het
Dctn1 A G 6: 83,183,089 T87A probably damaging Het
Ddx50 T C 10: 62,616,249 N732D unknown Het
Dnah5 A T 15: 28,311,143 Y1756F possibly damaging Het
Dock3 A T 9: 106,969,856 V858E probably damaging Het
Fer1l4 A G 2: 156,024,070 F1566S probably benign Het
Fpr-rs7 T C 17: 20,113,854 I125V probably benign Het
Fuca2 C T 10: 13,506,027 P228L probably benign Het
Galntl6 A G 8: 58,535,984 F57L probably benign Het
Gigyf2 T A 1: 87,407,727 probably benign Het
Gm16505 A T 13: 3,361,329 noncoding transcript Het
Gm4781 T C 10: 100,396,777 noncoding transcript Het
Gm9956 T A 10: 56,745,543 Y100* probably null Het
Gpr137c T A 14: 45,246,349 C178S probably damaging Het
Gpr83 A G 9: 14,868,644 R331G probably benign Het
Hlcs T A 16: 94,131,852 H851L probably damaging Het
Kbtbd6 C A 14: 79,451,884 Y6* probably null Het
Kif23 T C 9: 61,925,032 R610G possibly damaging Het
Kifc3 G A 8: 95,105,733 T487I probably damaging Het
Klra5 A C 6: 129,908,796 D133E possibly damaging Het
Klra6 T C 6: 130,022,705 E100G probably damaging Het
Klre1 T A 6: 129,585,568 probably benign Het
Lancl1 C T 1: 67,009,910 probably null Het
Lgr6 C T 1: 134,994,010 A199T probably damaging Het
Man1b1 A G 2: 25,338,155 I146V possibly damaging Het
Map4k5 T A 12: 69,874,264 probably benign Het
Mast3 A G 8: 70,781,321 S178P probably damaging Het
Mau2 A G 8: 70,023,612 probably null Het
Mkrn2 A T 6: 115,614,651 N312Y probably damaging Het
Mrvi1 T C 7: 110,876,900 S615G probably benign Het
Myh1 A G 11: 67,202,533 E150G probably damaging Het
Myo7b T A 18: 31,961,825 probably null Het
Nyap1 A G 5: 137,735,298 V491A probably damaging Het
Olfr1284 A G 2: 111,379,293 M98V probably damaging Het
Olfr484 T C 7: 108,124,734 I176M probably benign Het
Olfr518 A T 7: 108,881,533 N24K probably damaging Het
Olfr954 T C 9: 39,461,532 F34L probably damaging Het
Oxsm A T 14: 16,240,893 H385Q probably damaging Het
Pbld2 T C 10: 63,056,811 S242P probably damaging Het
Pdzd7 T C 19: 45,029,305 Y675C probably damaging Het
Pnkd T A 1: 74,351,541 H266Q probably damaging Het
Rbfox2 A G 15: 77,099,279 S141P probably benign Het
Rdx A G 9: 52,068,218 T214A probably benign Het
Ripor2 A T 13: 24,680,644 E219V probably damaging Het
Rufy2 G A 10: 63,011,844 probably benign Het
Slf2 T A 19: 44,975,726 probably benign Het
Snrnp200 G T 2: 127,226,145 probably benign Het
Stt3a T C 9: 36,735,512 I602V probably damaging Het
Tacr3 G A 3: 134,855,000 probably null Het
Tcerg1 C T 18: 42,571,840 T978M probably damaging Het
Tcf7l1 G T 6: 72,788,269 P126Q possibly damaging Het
Trank1 A G 9: 111,365,488 D860G probably damaging Het
Try4 T C 6: 41,304,367 L81P probably benign Het
Ucp1 T C 8: 83,297,847 probably benign Het
Ugt2b38 G A 5: 87,420,452 A328V probably damaging Het
Wfikkn1 T A 17: 25,878,017 R444S probably damaging Het
Zfc3h1 A G 10: 115,410,632 T875A probably benign Het
Zfp11 A G 5: 129,657,264 S378P probably damaging Het
Zfp984 T A 4: 147,756,232 N54I probably damaging Het
Other mutations in Snx7
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02593:Snx7 APN 3 117839960 missense probably damaging 1.00
IGL02859:Snx7 APN 3 117829671 splice site probably benign
IGL03260:Snx7 APN 3 117782293 utr 3 prime probably benign
IGL03357:Snx7 APN 3 117838875 missense probably damaging 1.00
P0026:Snx7 UTSW 3 117840023 missense probably damaging 1.00
R0620:Snx7 UTSW 3 117846675 missense probably damaging 0.96
R1613:Snx7 UTSW 3 117829573 splice site probably benign
R1621:Snx7 UTSW 3 117837156 missense possibly damaging 0.89
R1911:Snx7 UTSW 3 117829668 splice site probably null
R1912:Snx7 UTSW 3 117829668 splice site probably null
R3788:Snx7 UTSW 3 117838990 splice site probably benign
R4663:Snx7 UTSW 3 117800879 missense probably benign 0.00
R5182:Snx7 UTSW 3 117832857 missense probably damaging 1.00
R5681:Snx7 UTSW 3 117846623 missense probably benign 0.10
R6397:Snx7 UTSW 3 117846623 missense probably benign 0.10
R6715:Snx7 UTSW 3 117782336 missense possibly damaging 0.47
R6901:Snx7 UTSW 3 117829636 nonsense probably null
R6996:Snx7 UTSW 3 117846632 missense possibly damaging 0.82
R7049:Snx7 UTSW 3 117840031 missense possibly damaging 0.57
R7372:Snx7 UTSW 3 117782351 missense probably damaging 1.00
R7429:Snx7 UTSW 3 117837212 missense probably benign 0.00
R7741:Snx7 UTSW 3 117838839 missense probably damaging 1.00
R8025:Snx7 UTSW 3 117832877 missense probably benign
R8098:Snx7 UTSW 3 117838934 missense probably benign 0.00
R8125:Snx7 UTSW 3 117837245 missense probably damaging 0.96
Predicted Primers PCR Primer
(F):5'- TCTGCCAAGACATGTGCAGAGTG -3'
(R):5'- GTGCCCAGGGAAGCCTAATACAAG -3'

Sequencing Primer
(F):5'- TAGTTAGAAGTGCCCATACAGC -3'
(R):5'- ACATGATTTTAAATGCTTGATTACGG -3'
Posted On2013-09-03