Mutagenetix > Incidental Mutation

Incidental Mutation 'R8859:Cenpc1'

675512

Institutional Source

Beutler Lab

Gene Symbol

Cenpc1

Ensembl Gene

ENSMUSG00000029253

Gene Name

centromere protein C1

Synonyms

MMRRC Submission

068739-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R8859 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

86159883-86213442 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 86160153 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 895 (V895E)

Ref Sequence

ENSEMBL: ENSMUSP00000031170 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031170]

AlphaFold

P49452

Predicted Effect

probably benign
Transcript: ENSMUST00000031170
AA Change: V895E

PolyPhen 2 Score 0.023 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000031170
Gene: ENSMUSG00000029253
AA Change: V895E

Domain	Start	End	E-Value	Type
Pfam:CENP_C_N	7	121	6.1e-42	PFAM
Pfam:CENP_C_N	115	261	2.6e-46	PFAM
Pfam:CENP-C_mid	265	519	5.4e-100	PFAM
PDB:4INM\|W	700	724	5e-9	PDB
Pfam:CENP-C_C	819	903	3.9e-28	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

99% (95/96)

MGI Phenotype

FUNCTION: This gene encodes a centromeric protein component of a nucleosome-associated complex that plays a central role in kinetochore protein assembly, mitotic progression and chromosome segregation. The human ortholog encodes a protein with DNA-binding activity, that associates constitutively to kinetochores throughout the cell cycle, as part of a prekinetochore complex, together with centromeric protein-A and centromeric protein-B. Multiple pseudogenes of this gene have been identified. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]
PHENOTYPE: Homozygous mutation of this gene results in early embryonic lethality and mitotic abnormalities. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 100 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	A	T	11: 9,328,397 (GRCm39)	Y3490F		Het
Abcc1	T	C	16: 14,214,225 (GRCm39)	V167A	probably benign	Het
Abcd2	G	A	15: 91,073,149 (GRCm39)	R337C	probably damaging	Het
Adcy1	A	G	11: 7,111,877 (GRCm39)	D914G	probably benign	Het
Ahnak	G	T	19: 8,984,567 (GRCm39)	L1950F	probably damaging	Het
Alox5ap	T	C	5: 149,201,994 (GRCm39)		probably null	Het
Ank	C	T	15: 27,562,834 (GRCm39)	H181Y	possibly damaging	Het
Ankrd44	T	A	1: 54,706,680 (GRCm39)	D592V	possibly damaging	Het
Ap4m1	T	A	5: 138,174,185 (GRCm39)	N185K	possibly damaging	Het
Arhgef28	T	A	13: 98,082,210 (GRCm39)	D1199V	probably damaging	Het
Arnt	T	C	3: 95,397,691 (GRCm39)		probably null	Het
Atcay	C	T	10: 81,060,298 (GRCm39)	V13M	probably benign	Het
B4galt3	T	C	1: 171,099,241 (GRCm39)	S2P	unknown	Het
Bicra	A	T	7: 15,721,737 (GRCm39)	S593R	possibly damaging	Het
Brsk2	A	C	7: 141,552,415 (GRCm39)	Q633P	probably damaging	Het
Cacna1c	T	A	6: 118,653,280 (GRCm39)	S909C		Het
Ccdc7a	G	A	8: 129,788,113 (GRCm39)	T72M	probably benign	Het
Ccn1	T	C	3: 145,354,380 (GRCm39)	D177G	probably benign	Het
Cct2	A	T	10: 116,896,739 (GRCm39)	F155I	possibly damaging	Het
Cdv3	G	T	9: 103,233,594 (GRCm39)	P194T	probably damaging	Het
Cep170b	T	C	12: 112,702,881 (GRCm39)	V448A	probably benign	Het
Chil3	G	A	3: 106,071,440 (GRCm39)	R75C	possibly damaging	Het
Cnfn	A	T	7: 25,067,869 (GRCm39)	C24S	probably benign	Het
Cnga3	A	G	1: 37,299,852 (GRCm39)	K191E	possibly damaging	Het
Col12a1	A	T	9: 79,587,681 (GRCm39)	Y1153*	probably null	Het
Coq4	C	A	2: 29,685,491 (GRCm39)	H168Q	probably damaging	Het
Dennd2b	T	A	7: 109,123,863 (GRCm39)	K1132M	probably damaging	Het
Dnajc14	G	A	10: 128,642,488 (GRCm39)	V137I	probably benign	Het
Efr3a	T	C	15: 65,726,614 (GRCm39)	L569P	probably damaging	Het
Epb41l3	A	T	17: 69,591,575 (GRCm39)	E677D	probably benign	Het
Esp8	G	A	17: 40,841,013 (GRCm39)	M91I	unknown	Het
Fubp1	A	T	3: 151,937,669 (GRCm39)		probably benign	Het
Gldc	G	T	19: 30,116,779 (GRCm39)	A391D	probably damaging	Het
Gm17728	A	G	17: 9,641,027 (GRCm39)	T46A	probably benign	Het
Gm5798	A	G	14: 41,072,603 (GRCm39)	K112E	probably damaging	Het
Gpnmb	A	G	6: 49,028,964 (GRCm39)		probably benign	Het
Grwd1	T	C	7: 45,475,298 (GRCm39)	T415A	probably benign	Het
Gsdma3	C	G	11: 98,522,086 (GRCm39)	A172G	possibly damaging	Het
Hltf	C	T	3: 20,119,566 (GRCm39)	Q204*	probably null	Het
Igf1r	T	G	7: 67,833,211 (GRCm39)	V457G	possibly damaging	Het
Inhbc	A	T	10: 127,192,984 (GRCm39)	M344K	probably damaging	Het
Jak3	C	T	8: 72,131,160 (GRCm39)	A60V	probably benign	Het
Kif13b	A	G	14: 64,979,882 (GRCm39)	T511A	probably benign	Het
Lama2	T	A	10: 27,335,384 (GRCm39)	N97I	possibly damaging	Het
Limd2	T	A	11: 106,049,576 (GRCm39)	D104V	probably damaging	Het
Loxl3	T	A	6: 83,014,526 (GRCm39)	C145S	probably damaging	Het
Lrrc37	A	C	11: 103,506,370 (GRCm39)	I1866S	unknown	Het
Lrrc73	A	G	17: 46,565,455 (GRCm39)	N62S	probably benign	Het
Lrrtm4	A	G	6: 79,998,870 (GRCm39)	D94G	probably damaging	Het
Lsm3	C	A	6: 91,499,252 (GRCm39)	F86L	probably damaging	Het
Map10	T	C	8: 126,397,291 (GRCm39)	V228A	probably benign	Het
Mcidas	A	C	13: 113,130,664 (GRCm39)	S54R	possibly damaging	Het
Me3	T	C	7: 89,455,876 (GRCm39)	Y243H	probably damaging	Het
Mgat4b	A	G	11: 50,121,674 (GRCm39)	T89A	possibly damaging	Het
Mmp16	T	A	4: 18,054,355 (GRCm39)		probably benign	Het
Mtmr9	G	A	14: 63,781,226 (GRCm39)		probably benign	Het
Myo1b	G	T	1: 51,836,198 (GRCm39)	A331E	probably damaging	Het
Ncoa6	C	T	2: 155,248,388 (GRCm39)	V1639M	possibly damaging	Het
Nek9	C	T	12: 85,353,120 (GRCm39)	G752R	probably damaging	Het
Nufip2	A	G	11: 77,584,069 (GRCm39)	Y661C	probably benign	Het
Or10w1	T	A	19: 13,632,246 (GRCm39)	V151E	probably damaging	Het
Or1n2	C	T	2: 36,797,516 (GRCm39)	A186V	possibly damaging	Het
Or51t4	A	T	7: 102,598,373 (GRCm39)	I234F	probably damaging	Het
Or7g16	T	C	9: 18,726,992 (GRCm39)	I199M	possibly damaging	Het
Or8g55	G	A	9: 39,784,894 (GRCm39)	G108S	probably benign	Het
Oxct2a	A	G	4: 123,216,322 (GRCm39)	L353S	probably benign	Het
Parvg	A	G	15: 84,222,001 (GRCm39)	I243V	probably benign	Het
Pcdhgb7	C	A	18: 37,886,349 (GRCm39)	N506K	possibly damaging	Het
Peg10	T	TCCA	6: 4,756,451 (GRCm39)		probably benign	Het
Pgghg	G	A	7: 140,525,367 (GRCm39)		probably null	Het
Phrf1	G	T	7: 140,836,516 (GRCm39)	G263W	unknown	Het
Ppfia1	A	C	7: 144,032,762 (GRCm39)		probably null	Het
Prss37	T	A	6: 40,491,897 (GRCm39)	I228F	probably damaging	Het
Ptpro	A	T	6: 137,403,782 (GRCm39)	K921*	probably null	Het
Rictor	T	G	15: 6,813,067 (GRCm39)	L940R	probably damaging	Het
Rp1	A	G	1: 4,420,183 (GRCm39)	S310P	probably benign	Het
Ryr3	A	G	2: 112,483,564 (GRCm39)	V4091A	probably damaging	Het
Saxo4	T	A	19: 10,459,599 (GRCm39)	Y36F	probably damaging	Het
Sirt5	T	A	13: 43,524,327 (GRCm39)	M33K	possibly damaging	Het
Slc25a30	T	A	14: 76,008,917 (GRCm39)	Y90F	probably benign	Het
Stimate	T	A	14: 30,588,629 (GRCm39)	Y119N	probably damaging	Het
Stk11	G	A	10: 79,964,269 (GRCm39)	D388N	probably benign	Het
Tgm1	C	A	14: 55,949,686 (GRCm39)	R126L	probably benign	Het
Tmem129	G	T	5: 33,811,837 (GRCm39)	T321N	probably benign	Het
Tnfrsf11a	A	T	1: 105,772,244 (GRCm39)		probably null	Het
Tor1aip1	A	G	1: 155,907,190 (GRCm39)	C195R	probably benign	Het
Tpr	A	G	1: 150,284,597 (GRCm39)	E428G	possibly damaging	Het
Trps1	T	A	15: 50,685,769 (GRCm39)	D802V	possibly damaging	Het
Usp17lc	T	A	7: 103,064,316 (GRCm39)	S6T	probably benign	Het
Vangl1	C	A	3: 102,065,758 (GRCm39)	R459L		Het
Vmn1r43	T	C	6: 89,846,937 (GRCm39)	Y183C	probably damaging	Het
Vmn2r110	C	T	17: 20,794,560 (GRCm39)	C703Y	probably damaging	Het
Vmn2r54	T	C	7: 12,363,702 (GRCm39)	Q397R	possibly damaging	Het
Vmn2r88	T	C	14: 51,656,263 (GRCm39)	V824A	probably damaging	Het
Vmn2r89	A	T	14: 51,693,170 (GRCm39)	Y79F	probably benign	Het
Vnn1	T	C	10: 23,780,484 (GRCm39)	S491P	probably benign	Het
Zbbx	A	G	3: 74,968,741 (GRCm39)	F572L	unknown	Het
Zc3h4	A	T	7: 16,168,939 (GRCm39)	Q1091L	unknown	Het
Zfp503	C	T	14: 22,037,286 (GRCm39)	V106I	possibly damaging	Het
Zfp874a	T	C	13: 67,590,647 (GRCm39)	T346A	probably benign	Het

Other mutations in Cenpc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00921:Cenpc1	APN	5	86,185,387 (GRCm39)	missense	probably benign	0.02
IGL01287:Cenpc1	APN	5	86,170,313 (GRCm39)	nonsense	probably null
IGL01363:Cenpc1	APN	5	86,194,390 (GRCm39)	nonsense	probably null
IGL01720:Cenpc1	APN	5	86,193,284 (GRCm39)	missense	possibly damaging	0.84
IGL02217:Cenpc1	APN	5	86,177,059 (GRCm39)	splice site	probably benign
IGL02665:Cenpc1	APN	5	86,194,262 (GRCm39)	missense	probably benign	0.01
IGL03022:Cenpc1	APN	5	86,170,234 (GRCm39)	splice site	probably benign
IGL03162:Cenpc1	APN	5	86,185,764 (GRCm39)	missense	possibly damaging	0.94
IGL03343:Cenpc1	APN	5	86,164,181 (GRCm39)	missense	probably damaging	0.96
R0130:Cenpc1	UTSW	5	86,194,405 (GRCm39)	missense	probably benign	0.07
R0193:Cenpc1	UTSW	5	86,180,262 (GRCm39)	missense	probably benign	0.30
R0314:Cenpc1	UTSW	5	86,185,230 (GRCm39)	missense	probably benign	0.20
R0932:Cenpc1	UTSW	5	86,185,459 (GRCm39)	missense	possibly damaging	0.94
R0973:Cenpc1	UTSW	5	86,185,767 (GRCm39)	missense	probably damaging	1.00
R0973:Cenpc1	UTSW	5	86,185,767 (GRCm39)	missense	probably damaging	1.00
R0974:Cenpc1	UTSW	5	86,185,767 (GRCm39)	missense	probably damaging	1.00
R1240:Cenpc1	UTSW	5	86,183,369 (GRCm39)	missense	probably benign	0.32
R1454:Cenpc1	UTSW	5	86,161,369 (GRCm39)	missense	possibly damaging	0.71
R1677:Cenpc1	UTSW	5	86,209,857 (GRCm39)	splice site	probably benign
R2044:Cenpc1	UTSW	5	86,185,614 (GRCm39)	missense	probably benign	0.01
R2256:Cenpc1	UTSW	5	86,164,062 (GRCm39)	missense	probably damaging	1.00
R3085:Cenpc1	UTSW	5	86,185,476 (GRCm39)	missense	probably benign	0.01
R4516:Cenpc1	UTSW	5	86,195,446 (GRCm39)	missense	possibly damaging	0.72
R4518:Cenpc1	UTSW	5	86,195,446 (GRCm39)	missense	possibly damaging	0.72
R4561:Cenpc1	UTSW	5	86,195,491 (GRCm39)	missense	probably damaging	1.00
R4827:Cenpc1	UTSW	5	86,182,290 (GRCm39)	missense	possibly damaging	0.67
R4864:Cenpc1	UTSW	5	86,193,180 (GRCm39)	missense	probably damaging	1.00
R5222:Cenpc1	UTSW	5	86,185,606 (GRCm39)	missense	possibly damaging	0.77
R5707:Cenpc1	UTSW	5	86,183,293 (GRCm39)	missense	possibly damaging	0.82
R5920:Cenpc1	UTSW	5	86,168,769 (GRCm39)	missense	probably benign	0.00
R5999:Cenpc1	UTSW	5	86,160,122 (GRCm39)	missense	probably damaging	1.00
R6073:Cenpc1	UTSW	5	86,206,012 (GRCm39)	critical splice donor site	probably null
R6209:Cenpc1	UTSW	5	86,181,509 (GRCm39)	missense	probably benign	0.02
R6244:Cenpc1	UTSW	5	86,194,244 (GRCm39)	missense	probably damaging	1.00
R6278:Cenpc1	UTSW	5	86,183,394 (GRCm39)	missense	probably damaging	0.97
R6395:Cenpc1	UTSW	5	86,183,429 (GRCm39)	missense	probably benign	0.14
R7269:Cenpc1	UTSW	5	86,180,277 (GRCm39)	missense	probably benign	0.12
R7269:Cenpc1	UTSW	5	86,161,366 (GRCm39)	missense	probably damaging	1.00
R7335:Cenpc1	UTSW	5	86,182,212 (GRCm39)	missense	possibly damaging	0.95
R7378:Cenpc1	UTSW	5	86,194,358 (GRCm39)	missense	probably benign	0.02
R7968:Cenpc1	UTSW	5	86,181,551 (GRCm39)	missense	probably benign
R8380:Cenpc1	UTSW	5	86,194,275 (GRCm39)	missense	probably benign	0.00
R8780:Cenpc1	UTSW	5	86,164,209 (GRCm39)	missense	probably damaging	1.00
R8982:Cenpc1	UTSW	5	86,195,533 (GRCm39)	missense	probably damaging	1.00
R9157:Cenpc1	UTSW	5	86,166,316 (GRCm39)	missense	probably benign	0.00
RF018:Cenpc1	UTSW	5	86,193,228 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- ACAGACAAGATGCCACTTTGTG -3'
(R):5'- AGTAGCTGGCGATGAACTTTG -3'

Sequencing Primer
(F):5'- ACTAAACACAGTATTTACACTCAAGG -3'
(R):5'- GTCTTTGGAGTCATGCAGTTAAATC -3'

Posted On

2021-07-15