Mutagenetix > Incidental Mutation

Incidental Mutation 'R0732:Ptcd3'

67639

Institutional Source

Beutler Lab

Gene Symbol

Ptcd3

Ensembl Gene

ENSMUSG00000063884

Gene Name

pentatricopeptide repeat domain 3

Synonyms

2610034F17Rik, 2810422B04Rik

MMRRC Submission

038913-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R0732 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

71857622-71885734 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to T at 71858155 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000145872 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000082094] [ENSMUST00000206879] [ENSMUST00000207003]

AlphaFold

Q14C51

Predicted Effect

unknown
Transcript: ENSMUST00000082094
AA Change: S680R

SMART Domains

Protein: ENSMUSP00000080743
Gene: ENSMUSG00000063884
AA Change: S680R

Domain	Start	End	E-Value	Type
low complexity region	2	8	N/A	INTRINSIC
low complexity region	216	227	N/A	INTRINSIC
Pfam:PPR_2	253	300	1.4e-10	PFAM
Pfam:PPR_3	331	366	2.1e-4	PFAM
low complexity region	671	684	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000116815

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205269

Predicted Effect

probably benign
Transcript: ENSMUST00000205628

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205691

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206762

Predicted Effect

probably benign
Transcript: ENSMUST00000206879

Predicted Effect

probably benign
Transcript: ENSMUST00000207003

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.4%
20x: 94.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2ml1	T	C	6: 128,523,411 (GRCm39)	Y1175C	probably damaging	Het
Acsm3	T	C	7: 119,373,057 (GRCm39)	S187P	probably benign	Het
Adam28	T	C	14: 68,874,796 (GRCm39)	I294V	probably benign	Het
Adgrv1	T	C	13: 81,651,123 (GRCm39)	I3057M	possibly damaging	Het
Aff4	T	C	11: 53,266,423 (GRCm39)	V304A	probably benign	Het
Akr1b10	T	C	6: 34,367,044 (GRCm39)	Y108H	probably benign	Het
Ankib1	T	C	5: 3,763,163 (GRCm39)	N522S	possibly damaging	Het
Ano1	T	A	7: 144,173,225 (GRCm39)		probably null	Het
Antxr2	G	T	5: 98,108,567 (GRCm39)		probably null	Het
Arc	G	A	15: 74,543,044 (GRCm39)	T393I	probably damaging	Het
Arhgef33	A	G	17: 80,688,783 (GRCm39)	D5G	possibly damaging	Het
Atf2	A	T	2: 73,675,844 (GRCm39)	M169K	possibly damaging	Het
BC005624	T	A	2: 30,863,949 (GRCm39)	T215S	possibly damaging	Het
Bmp8b	G	A	4: 122,999,199 (GRCm39)	G19D	unknown	Het
Cacna1d	T	C	14: 29,764,877 (GRCm39)	N1987S	probably damaging	Het
Camta1	T	A	4: 151,670,941 (GRCm39)		probably null	Het
Catsperg2	C	T	7: 29,400,121 (GRCm39)	G316D	probably damaging	Het
Cbs	G	T	17: 31,844,003 (GRCm39)	N209K	probably benign	Het
Ccdc122	T	A	14: 77,329,199 (GRCm39)	M84K	probably damaging	Het
Cd5	C	T	19: 10,700,649 (GRCm39)	C285Y	probably damaging	Het
Chpf2	T	C	5: 24,795,419 (GRCm39)	M1T	probably null	Het
Coch	T	A	12: 51,642,155 (GRCm39)	D42E	probably damaging	Het
Crip2	C	T	12: 113,104,178 (GRCm39)		probably benign	Het
Crlf2	G	C	5: 109,705,004 (GRCm39)	P67R	probably damaging	Het
Cxcl16	G	T	11: 70,346,234 (GRCm39)	P233H	probably damaging	Het
Cyfip1	T	C	7: 55,536,529 (GRCm39)	I319T	probably damaging	Het
Ddhd2	T	C	8: 26,231,348 (GRCm39)	Q364R	probably damaging	Het
Ephx2	A	G	14: 66,324,412 (GRCm39)		probably null	Het
Exoc6b	C	A	6: 84,832,504 (GRCm39)	V397L	probably damaging	Het
Fam83b	T	A	9: 76,400,210 (GRCm39)	K298*	probably null	Het
Fbxo8	T	A	8: 57,044,564 (GRCm39)	I289N	probably damaging	Het
Fkbp9	T	A	6: 56,855,089 (GRCm39)	M536K	probably benign	Het
Flot1	C	T	17: 36,136,416 (GRCm39)	R190W	possibly damaging	Het
Gbp2b	T	A	3: 142,312,739 (GRCm39)	V374E	probably benign	Het
Gna15	T	A	10: 81,348,390 (GRCm39)	S114C	probably damaging	Het
Gstt4	T	A	10: 75,653,155 (GRCm39)	T136S	probably benign	Het
Hcn3	C	T	3: 89,056,093 (GRCm39)	V524M	probably damaging	Het
Kctd16	A	T	18: 40,391,616 (GRCm39)	D68V	probably damaging	Het
Kics2	T	C	10: 121,586,852 (GRCm39)	V253A	possibly damaging	Het
Krt90	G	T	15: 101,468,860 (GRCm39)	F227L	possibly damaging	Het
Lrrc37	T	C	11: 103,510,664 (GRCm39)	T435A	unknown	Het
Maip1	A	G	1: 57,450,994 (GRCm39)	Y212C	probably damaging	Het
Mamdc2	C	T	19: 23,356,233 (GRCm39)	D72N	probably damaging	Het
Marveld3	A	T	8: 110,675,115 (GRCm39)	Y234N	probably damaging	Het
Mas1	A	G	17: 13,060,634 (GRCm39)	I263T	probably benign	Het
Matk	T	A	10: 81,094,140 (GRCm39)		probably null	Het
Mrgpre	T	A	7: 143,335,303 (GRCm39)	I67F	possibly damaging	Het
Mthfd1	T	A	12: 76,340,948 (GRCm39)	I449N	probably damaging	Het
Nacc1	C	T	8: 85,402,830 (GRCm39)	R321Q	probably damaging	Het
Neb	T	C	2: 52,148,693 (GRCm39)	D2618G	probably damaging	Het
Neb	T	C	2: 52,181,280 (GRCm39)	Y1109C	probably damaging	Het
Nell1	T	G	7: 50,506,135 (GRCm39)	W781G	probably damaging	Het
Or4g16	T	A	2: 111,137,325 (GRCm39)	Y258*	probably null	Het
Or4x6	A	G	2: 89,949,666 (GRCm39)	V92A	probably benign	Het
Or52d1	T	C	7: 103,755,501 (GRCm39)	L5P	probably damaging	Het
Or55b4	T	C	7: 102,133,650 (GRCm39)	I226V	probably benign	Het
Or5p72	C	A	7: 108,021,784 (GRCm39)	A2D	probably benign	Het
Or6k4	A	T	1: 173,964,981 (GRCm39)	I224F	possibly damaging	Het
Or8s8	T	C	15: 98,354,959 (GRCm39)	L256S	possibly damaging	Het
Or8u10	A	C	2: 85,915,928 (GRCm39)	S64R	probably benign	Het
Pcdh7	C	A	5: 57,878,657 (GRCm39)	D737E	probably damaging	Het
Pdss1	T	G	2: 22,791,324 (GRCm39)	M55R	probably benign	Het
Pex6	C	T	17: 47,035,626 (GRCm39)	R889W	probably damaging	Het
Pigl	T	A	11: 62,349,307 (GRCm39)	C8S	possibly damaging	Het
Plekha7	A	T	7: 115,744,472 (GRCm39)	M585K	probably damaging	Het
Ppp1r1a	C	T	15: 103,441,514 (GRCm39)	M66I	possibly damaging	Het
Rhov	A	T	2: 119,101,495 (GRCm39)	V37E	probably damaging	Het
Rnf213	A	T	11: 119,331,894 (GRCm39)	M2368L	probably damaging	Het
Skida1	T	C	2: 18,050,968 (GRCm39)		probably benign	Het
Slc25a28	T	C	19: 43,655,392 (GRCm39)	D161G	probably benign	Het
Smc6	T	C	12: 11,340,818 (GRCm39)	V490A	probably damaging	Het
Sohlh2	T	A	3: 55,097,794 (GRCm39)		probably null	Het
Stk31	A	G	6: 49,394,429 (GRCm39)	T264A	probably benign	Het
Syngap1	T	A	17: 27,173,962 (GRCm39)	S190R	possibly damaging	Het
Tacr1	T	A	6: 82,529,882 (GRCm39)	V200E	probably damaging	Het
Tbrg4	C	T	11: 6,570,812 (GRCm39)	R220H	probably benign	Het
Tcf20	A	G	15: 82,736,504 (GRCm39)	L1649P	probably benign	Het
Tcirg1	A	T	19: 3,947,866 (GRCm39)	L523Q	possibly damaging	Het
Tinag	T	A	9: 76,908,936 (GRCm39)	K335M	possibly damaging	Het
Tkt	T	G	14: 30,293,097 (GRCm39)		probably null	Het
Tnpo1	C	T	13: 99,000,320 (GRCm39)	R349H	probably damaging	Het
Trim26	T	A	17: 37,163,510 (GRCm39)	S230R	possibly damaging	Het
Trim8	T	A	19: 46,503,178 (GRCm39)		probably null	Het
Trp53bp1	T	C	2: 121,078,745 (GRCm39)	R326G	probably null	Het
Ugt2a2	A	T	5: 87,608,498 (GRCm39)	I613N	probably damaging	Het
Vmn1r32	T	C	6: 66,530,690 (GRCm39)	I29V	probably benign	Het
Wnt5b	C	T	6: 119,423,543 (GRCm39)	W27*	probably null	Het

Other mutations in Ptcd3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00767:Ptcd3	APN	6	71,880,432 (GRCm39)	missense	probably damaging	0.96
IGL00903:Ptcd3	APN	6	71,884,828 (GRCm39)	missense	possibly damaging	0.93
IGL01545:Ptcd3	APN	6	71,865,561 (GRCm39)	missense	probably benign	0.01
IGL01924:Ptcd3	APN	6	71,875,411 (GRCm39)	missense	probably damaging	1.00
IGL02675:Ptcd3	APN	6	71,860,426 (GRCm39)	critical splice donor site	probably null
R1374:Ptcd3	UTSW	6	71,885,637 (GRCm39)	nonsense	probably null
R1393:Ptcd3	UTSW	6	71,866,605 (GRCm39)	missense	probably benign	0.00
R1498:Ptcd3	UTSW	6	71,870,479 (GRCm39)	missense	probably damaging	1.00
R1646:Ptcd3	UTSW	6	71,875,379 (GRCm39)	missense	probably benign	0.26
R1712:Ptcd3	UTSW	6	71,885,637 (GRCm39)	nonsense	probably null
R2022:Ptcd3	UTSW	6	71,862,537 (GRCm39)	missense	probably damaging	1.00
R2248:Ptcd3	UTSW	6	71,871,269 (GRCm39)	critical splice donor site	probably null
R2406:Ptcd3	UTSW	6	71,865,631 (GRCm39)	missense	probably damaging	1.00
R3418:Ptcd3	UTSW	6	71,860,470 (GRCm39)	missense	possibly damaging	0.93
R3419:Ptcd3	UTSW	6	71,860,470 (GRCm39)	missense	possibly damaging	0.93
R4677:Ptcd3	UTSW	6	71,870,498 (GRCm39)	missense	probably benign	0.17
R4741:Ptcd3	UTSW	6	71,879,933 (GRCm39)	missense	probably damaging	1.00
R4752:Ptcd3	UTSW	6	71,878,296 (GRCm39)	missense	probably damaging	0.99
R5441:Ptcd3	UTSW	6	71,858,505 (GRCm39)	missense	possibly damaging	0.62
R5583:Ptcd3	UTSW	6	71,879,920 (GRCm39)	missense	probably damaging	1.00
R5681:Ptcd3	UTSW	6	71,884,643 (GRCm39)	missense	probably damaging	1.00
R6028:Ptcd3	UTSW	6	71,875,392 (GRCm39)	missense	probably damaging	1.00
R6324:Ptcd3	UTSW	6	71,862,311 (GRCm39)	missense	probably benign	0.00
R6537:Ptcd3	UTSW	6	71,874,094 (GRCm39)	splice site	probably null
R6600:Ptcd3	UTSW	6	71,860,530 (GRCm39)	missense	probably damaging	1.00
R6783:Ptcd3	UTSW	6	71,885,627 (GRCm39)	missense	probably benign	0.00
R6810:Ptcd3	UTSW	6	71,862,516 (GRCm39)	missense	probably damaging	0.99
R6860:Ptcd3	UTSW	6	71,874,094 (GRCm39)	splice site	probably null
R6993:Ptcd3	UTSW	6	71,862,299 (GRCm39)	missense	probably damaging	1.00
R7578:Ptcd3	UTSW	6	71,885,691 (GRCm39)	missense	probably benign
R7788:Ptcd3	UTSW	6	71,862,541 (GRCm39)	missense	probably benign	0.00
R7851:Ptcd3	UTSW	6	71,879,843 (GRCm39)	missense	probably damaging	1.00
R7888:Ptcd3	UTSW	6	71,860,431 (GRCm39)	missense	probably damaging	1.00
R7889:Ptcd3	UTSW	6	71,865,592 (GRCm39)	missense	probably damaging	1.00
R7919:Ptcd3	UTSW	6	71,880,438 (GRCm39)	missense	probably damaging	1.00
R8162:Ptcd3	UTSW	6	71,884,798 (GRCm39)	missense	probably benign	0.02
R8351:Ptcd3	UTSW	6	71,885,625 (GRCm39)	missense	probably benign	0.00
R8451:Ptcd3	UTSW	6	71,885,625 (GRCm39)	missense	probably benign	0.00
R8701:Ptcd3	UTSW	6	71,862,495 (GRCm39)	missense	possibly damaging	0.92
R8826:Ptcd3	UTSW	6	71,885,645 (GRCm39)	missense	probably benign	0.01
R8926:Ptcd3	UTSW	6	71,869,464 (GRCm39)	missense	probably damaging	1.00
R8969:Ptcd3	UTSW	6	71,880,431 (GRCm39)	missense	probably benign	0.44
R9031:Ptcd3	UTSW	6	71,880,458 (GRCm39)	nonsense	probably null
R9046:Ptcd3	UTSW	6	71,870,364 (GRCm39)	critical splice donor site	probably null
R9384:Ptcd3	UTSW	6	71,874,110 (GRCm39)	missense	possibly damaging	0.77
R9668:Ptcd3	UTSW	6	71,871,275 (GRCm39)	missense	possibly damaging	0.93
R9771:Ptcd3	UTSW	6	71,872,903 (GRCm39)	nonsense	probably null
X0024:Ptcd3	UTSW	6	71,878,258 (GRCm39)	missense	probably damaging	1.00
X0065:Ptcd3	UTSW	6	71,884,790 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGCAGATGAACCCCAGGGTCTTAG -3'
(R):5'- GAGAGCCTTGCCCAAAGAGTAGTG -3'

Sequencing Primer
(F):5'- GATCCCAGCCCTGTATCTGTTT -3'
(R):5'- GATGGATTTCACAGTTGACCCAG -3'

Posted On

2013-09-03