Mutagenetix > Incidental Mutation

Incidental Mutation 'R8877:Arid3b'

676641

Institutional Source

Beutler Lab

Gene Symbol

Arid3b

Ensembl Gene

ENSMUSG00000004661

Gene Name

AT-rich interaction domain 3B

Synonyms

Bdp, Dri2

MMRRC Submission

068745-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R8877 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

57697636-57744076 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 57740904 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 181 (K181E)

Ref Sequence

ENSEMBL: ENSMUSP00000004780 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004780] [ENSMUST00000098686] [ENSMUST00000114165] [ENSMUST00000164010] [ENSMUST00000164035] [ENSMUST00000171444]

AlphaFold

Q9Z1N7

Predicted Effect

probably damaging
Transcript: ENSMUST00000004780
AA Change: K181E

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000004780
Gene: ENSMUSG00000004661
AA Change: K181E

Domain	Start	End	E-Value	Type
low complexity region	3	22	N/A	INTRINSIC
low complexity region	88	116	N/A	INTRINSIC
ARID	210	301	9.52e-35	SMART
BRIGHT	214	306	6.43e-39	SMART
low complexity region	339	358	N/A	INTRINSIC
low complexity region	372	386	N/A	INTRINSIC
low complexity region	528	559	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000098686
AA Change: K181E

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000096283
Gene: ENSMUSG00000004661
AA Change: K181E

Domain	Start	End	E-Value	Type
low complexity region	3	22	N/A	INTRINSIC
low complexity region	88	116	N/A	INTRINSIC
ARID	210	301	9.52e-35	SMART
BRIGHT	214	306	6.43e-39	SMART
low complexity region	339	358	N/A	INTRINSIC
low complexity region	372	386	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000114165
AA Change: K181E

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000109802
Gene: ENSMUSG00000004661
AA Change: K181E

Domain	Start	End	E-Value	Type
low complexity region	3	22	N/A	INTRINSIC
low complexity region	88	116	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000164010
AA Change: K181E

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000126889
Gene: ENSMUSG00000004661
AA Change: K181E

Domain	Start	End	E-Value	Type
low complexity region	3	22	N/A	INTRINSIC
low complexity region	88	116	N/A	INTRINSIC
SCOP:d1c20a_	174	240	6e-9	SMART
PDB:4LJX\|B	204	238	4e-9	PDB
Blast:ARID	210	231	5e-7	BLAST

Predicted Effect

possibly damaging
Transcript: ENSMUST00000164035
AA Change: K181E

PolyPhen 2 Score 0.853 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000131677
Gene: ENSMUSG00000004661
AA Change: K181E

Domain	Start	End	E-Value	Type
low complexity region	3	22	N/A	INTRINSIC
low complexity region	88	116	N/A	INTRINSIC
SCOP:d1c20a_	174	233	2e-8	SMART
PDB:4LJX\|B	204	268	1e-10	PDB
Blast:ARID	210	267	3e-8	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000171444
AA Change: K181E

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000130173
Gene: ENSMUSG00000004661
AA Change: K181E

Domain	Start	End	E-Value	Type
low complexity region	3	22	N/A	INTRINSIC
low complexity region	88	116	N/A	INTRINSIC
ARID	210	301	9.52e-35	SMART
BRIGHT	214	306	6.43e-39	SMART
low complexity region	339	358	N/A	INTRINSIC
low complexity region	372	386	N/A	INTRINSIC
low complexity region	528	559	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

100% (58/58)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA-binding proteins. The encoded protein is homologous with two proteins that bind to the retinoblastoma gene product, and also with the mouse Bright and Drosophila dead ringer proteins. A pseudogene on chromosome 1p31 exists for this gene. Members of the ARID family have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation and possibly in chromatin structure modification. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele die before E11.5 displaying variable phenotypes associated with impaired generation of cranial-mesenchymal cells in the first and second branchial arches. Common defects include a wavy neural tube, small branchial arches, and a defective cardiovascular system. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900092C05Rik	T	A	7: 12,288,704 (GRCm39)		probably null	Het
Acp2	G	A	2: 91,036,129 (GRCm39)	R109H	probably damaging	Het
Adamts8	T	C	9: 30,862,688 (GRCm39)	S298P	probably damaging	Het
Anxa7	A	G	14: 20,517,548 (GRCm39)	V157A	probably benign	Het
Armt1	A	G	10: 4,400,864 (GRCm39)	T204A	possibly damaging	Het
Brip1	A	C	11: 86,043,532 (GRCm39)	V344G	possibly damaging	Het
Ccdc40	C	T	11: 119,153,992 (GRCm39)	S1088L	probably damaging	Het
Ccdc93	A	T	1: 121,403,867 (GRCm39)	H332L	probably benign	Het
Celsr3	A	G	9: 108,706,877 (GRCm39)	D1120G	probably damaging	Het
Cep104	T	A	4: 154,077,985 (GRCm39)	I631N	probably damaging	Het
Col17a1	C	T	19: 47,637,197 (GRCm39)	A1354T	unknown	Het
Cpa2	T	C	6: 30,541,692 (GRCm39)	L10P	probably damaging	Het
Creg2	G	T	1: 39,689,861 (GRCm39)	T83K	probably benign	Het
Ddit3	T	C	10: 127,131,884 (GRCm39)	I144T	probably damaging	Het
Dmxl1	A	G	18: 50,011,292 (GRCm39)	I1150V	possibly damaging	Het
Eprs1	C	T	1: 185,148,071 (GRCm39)	R1278*	probably null	Het
Esco1	A	G	18: 10,575,017 (GRCm39)	V685A	probably damaging	Het
Gid8	C	T	2: 180,358,710 (GRCm39)	A125V	probably damaging	Het
Gin1	A	G	1: 97,710,941 (GRCm39)	D208G	possibly damaging	Het
Gja10	G	A	4: 32,602,441 (GRCm39)		probably benign	Het
Grin2d	T	C	7: 45,503,699 (GRCm39)	I679V	probably damaging	Het
Gsto2	C	A	19: 47,873,176 (GRCm39)	R184S	probably damaging	Het
Hira	T	A	16: 18,770,854 (GRCm39)	H830Q	probably benign	Het
Hmcn1	G	A	1: 150,514,659 (GRCm39)	T3571I	probably benign	Het
Khnyn	T	C	14: 56,131,782 (GRCm39)	V568A	possibly damaging	Het
Kif13a	T	A	13: 46,954,921 (GRCm39)		probably null	Het
Larp4b	T	C	13: 9,193,835 (GRCm39)	V161A	probably benign	Het
Larp6	T	A	9: 60,644,850 (GRCm39)	M330K	probably benign	Het
Lhfpl6	A	G	3: 52,950,974 (GRCm39)	R83G	possibly damaging	Het
Mavs	A	G	2: 131,087,489 (GRCm39)	N329S	possibly damaging	Het
Mep1b	T	A	18: 21,221,630 (GRCm39)	N193K	possibly damaging	Het
Msantd5f6	T	A	4: 73,322,468 (GRCm39)	R12*	probably null	Het
Mttp	A	T	3: 137,818,317 (GRCm39)	D380E	probably damaging	Het
Nbeal2	G	A	9: 110,459,311 (GRCm39)	T1939I	probably damaging	Het
Nsun7	A	T	5: 66,453,294 (GRCm39)	R670*	probably null	Het
Obsl1	G	A	1: 75,473,167 (GRCm39)	R1019*	probably null	Het
Or10ak12	A	G	4: 118,666,482 (GRCm39)	V193A	probably damaging	Het
Or5w11	T	C	2: 87,459,212 (GRCm39)	M19T	probably damaging	Het
Phc3	C	T	3: 30,968,271 (GRCm39)	V922I	probably damaging	Het
Pip5kl1	T	C	2: 32,468,951 (GRCm39)	V190A	possibly damaging	Het
Plekhg2	G	T	7: 28,060,278 (GRCm39)	T993N	possibly damaging	Het
Psg26	C	T	7: 18,217,865 (GRCm39)	V18I	probably benign	Het
Slc11a1	A	G	1: 74,419,424 (GRCm39)	Y187C	probably damaging	Het
Smarcd3	A	G	5: 24,798,990 (GRCm39)	S323P	possibly damaging	Het
Spen	G	T	4: 141,199,137 (GRCm39)	Y3163*	probably null	Het
Stx4a	T	A	7: 127,447,633 (GRCm39)	V259D	probably damaging	Het
Synj2	T	C	17: 6,087,941 (GRCm39)	S1331P	probably damaging	Het
Tmprss11c	G	A	5: 86,385,540 (GRCm39)	Q311*	probably null	Het
Tpo	T	A	12: 30,142,738 (GRCm39)	N662I	probably damaging	Het
Trav13d-4	C	A	14: 53,995,350 (GRCm39)	D101E	probably damaging	Het
Trbv14	G	A	6: 41,112,292 (GRCm39)	A30T	probably benign	Het
Unc80	T	C	1: 66,567,144 (GRCm39)	S917P	possibly damaging	Het
Zc3h6	T	A	2: 128,856,319 (GRCm39)	C466*	probably null	Het
Zfp462	T	C	4: 55,011,097 (GRCm39)	V1021A	probably damaging	Het
Zfp51	T	C	17: 21,682,017 (GRCm39)	M72T	probably damaging	Het
Zfp704	C	T	3: 9,674,416 (GRCm39)	E122K	unknown	Het
Zfyve26	T	C	12: 79,334,152 (GRCm39)	K289E	probably benign	Het

Other mutations in Arid3b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00432:Arid3b	APN	9	57,741,207 (GRCm39)	missense	possibly damaging	0.92
IGL01394:Arid3b	APN	9	57,702,317 (GRCm39)	missense	probably damaging	1.00
IGL01950:Arid3b	APN	9	57,702,257 (GRCm39)	missense	probably damaging	1.00
R0970:Arid3b	UTSW	9	57,740,834 (GRCm39)	intron	probably benign
R1848:Arid3b	UTSW	9	57,703,960 (GRCm39)	nonsense	probably null
R1940:Arid3b	UTSW	9	57,703,431 (GRCm39)	missense	possibly damaging	0.86
R4290:Arid3b	UTSW	9	57,697,713 (GRCm39)	unclassified	probably benign
R4293:Arid3b	UTSW	9	57,697,713 (GRCm39)	unclassified	probably benign
R4424:Arid3b	UTSW	9	57,741,151 (GRCm39)	missense	probably benign	0.22
R4449:Arid3b	UTSW	9	57,705,404 (GRCm39)	nonsense	probably null
R5353:Arid3b	UTSW	9	57,702,320 (GRCm39)	splice site	probably null
R5544:Arid3b	UTSW	9	57,705,380 (GRCm39)	nonsense	probably null
R6828:Arid3b	UTSW	9	57,717,446 (GRCm39)	critical splice donor site	probably null
R7168:Arid3b	UTSW	9	57,712,818 (GRCm39)	missense	probably benign	0.00
R7254:Arid3b	UTSW	9	57,704,037 (GRCm39)	missense	probably damaging	0.99
R7398:Arid3b	UTSW	9	57,703,495 (GRCm39)	missense	probably benign	0.01
R7882:Arid3b	UTSW	9	57,703,780 (GRCm39)	missense	possibly damaging	0.85
R7891:Arid3b	UTSW	9	57,717,442 (GRCm39)	missense	probably benign	0.00
R9043:Arid3b	UTSW	9	57,699,900 (GRCm39)	missense	possibly damaging	0.75
R9094:Arid3b	UTSW	9	57,741,327 (GRCm39)	missense	probably damaging	1.00
R9186:Arid3b	UTSW	9	57,702,217 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- ATCATGGAGCAACACCCTCG -3'
(R):5'- AGAGCAACGTGAACTCCGAG -3'

Sequencing Primer
(F):5'- TCGGTTCGAGCAAACAAATGC -3'
(R):5'- AACGTGAACTCCGAGCCTGAG -3'

Posted On

2021-07-15