Mutagenetix > Incidental Mutation

Incidental Mutation 'R8878:Hbs1l'

676703

Institutional Source

Beutler Lab

Gene Symbol

Hbs1l

Ensembl Gene

ENSMUSG00000019977

Gene Name

Hbs1-like (S. cerevisiae)

Synonyms

eRFS, 2810035F15Rik

MMRRC Submission

068746-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8878 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

21171876-21244788 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 21234711 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 588 (I588T)

Ref Sequence

ENSEMBL: ENSMUSP00000151689 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020153] [ENSMUST00000219915]

AlphaFold

Q69ZS7

Predicted Effect

probably benign
Transcript: ENSMUST00000020153
AA Change: I585T

PolyPhen 2 Score 0.274 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000020153
Gene: ENSMUSG00000019977
AA Change: I585T

Domain	Start	End	E-Value	Type
Pfam:HBS1_N	33	125	1e-22	PFAM
low complexity region	142	155	N/A	INTRINSIC
Pfam:GTP_EFTU	256	521	1.7e-48	PFAM
Pfam:GTP_EFTU_D3	572	681	9.2e-34	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000219915
AA Change: I588T

PolyPhen 2 Score 0.469 (Sensitivity: 0.89; Specificity: 0.90)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

99% (73/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the GTP-binding elongation factor family. It is expressed in multiple tissues with the highest expression in heart and skeletal muscle. The intergenic region of this gene and the MYB gene has been identified to be a quantitative trait locus (QTL) controlling fetal hemoglobin level, and this region influnces erythrocyte, platelet, and monocyte counts as well as erythrocyte volume and hemoglobin content. DNA polymorphisms at this region associate with fetal hemoglobin levels and pain crises in sickle cell disease. A single nucleotide polymorphism in exon 1 of this gene is significantly associated with severity in beta-thalassemia/Hemoglobin E. Multiple alternatively spliced transcript variants encoding different protein isoforms have been found for this gene. [provided by RefSeq, May 2009]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acss2	C	A	2: 155,398,324 (GRCm39)	H348Q	probably benign	Het
Ago1	T	A	4: 126,357,516 (GRCm39)	Y53F	probably benign	Het
Arrdc5	A	G	17: 56,601,342 (GRCm39)	L261P	probably benign	Het
Asb2	C	A	12: 103,290,138 (GRCm39)	W551L	possibly damaging	Het
Atl2	T	C	17: 80,160,232 (GRCm39)	I452V	probably benign	Het
Atxn7l3	T	C	11: 102,183,545 (GRCm39)	S203G	probably benign	Het
Bche	A	G	3: 73,608,506 (GRCm39)	F307L	probably benign	Het
C6	T	C	15: 4,826,454 (GRCm39)	V679A	probably benign	Het
Cd163	A	T	6: 124,297,469 (GRCm39)	N872Y	probably damaging	Het
Cdkal1	C	A	13: 29,658,607 (GRCm39)	V380F	probably damaging	Het
Ceacam11	A	T	7: 17,709,536 (GRCm39)	I245L	probably benign	Het
Ceacam16	G	T	7: 19,592,656 (GRCm39)	T84K	possibly damaging	Het
Ceacam2	T	A	7: 25,227,351 (GRCm39)	Q172L	probably benign	Het
Chga	T	G	12: 102,527,720 (GRCm39)	S125A	possibly damaging	Het
Col9a1	T	C	1: 24,236,048 (GRCm39)		probably null	Het
Crybg3	C	A	16: 59,380,547 (GRCm39)	A236S	probably benign	Het
Csmd1	A	G	8: 15,960,528 (GRCm39)	Y3296H	probably damaging	Het
Cyp2j8	C	A	4: 96,358,807 (GRCm39)	V371L	possibly damaging	Het
Des	C	A	1: 75,337,137 (GRCm39)	L26M	unknown	Het
Edc3	A	G	9: 57,623,484 (GRCm39)	S140G	possibly damaging	Het
Fam161a	C	T	11: 22,970,092 (GRCm39)	T90I	probably benign	Het
Fancm	T	C	12: 65,173,522 (GRCm39)	Y1945H	probably damaging	Het
Fbn2	C	T	18: 58,257,318 (GRCm39)	V350I	probably benign	Het
Git2	A	G	5: 114,899,649 (GRCm39)	C235R	possibly damaging	Het
Gk2	T	C	5: 97,604,341 (GRCm39)	K166E	probably benign	Het
Gm12258	G	A	11: 58,750,112 (GRCm39)	R429H	unknown	Het
Gm7247	T	G	14: 51,666,210 (GRCm39)		probably benign	Het
Gmppa	A	G	1: 75,414,932 (GRCm39)	Y59C	probably damaging	Het
Has1	G	T	17: 18,070,321 (GRCm39)	A200E	possibly damaging	Het
Helz2	A	G	2: 180,874,560 (GRCm39)	V1978A	possibly damaging	Het
Hoxb9	T	C	11: 96,165,557 (GRCm39)	Y209H	probably damaging	Het
Hps5	T	C	7: 46,421,345 (GRCm39)	D706G	probably benign	Het
Hydin	T	C	8: 111,035,720 (GRCm39)	V137A	probably benign	Het
Ifngr2	T	C	16: 91,359,847 (GRCm39)	I318T	probably benign	Het
Iqgap3	C	T	3: 88,020,532 (GRCm39)	T1290I	probably damaging	Het
Jrk	A	T	15: 74,578,988 (GRCm39)	V99E	probably benign	Het
Kalrn	G	A	16: 34,025,696 (GRCm39)	T931M	probably damaging	Het
Kalrn	G	A	16: 34,018,830 (GRCm39)	P1311S	probably benign	Het
Kirrel3	A	G	9: 34,850,561 (GRCm39)		probably benign	Het
Klk1b9	T	C	7: 43,443,782 (GRCm39)	F99L	possibly damaging	Het
Lamb3	T	C	1: 193,013,124 (GRCm39)	C450R	probably damaging	Het
Lyst	T	A	13: 13,815,661 (GRCm39)	S1182T	probably benign	Het
Map1a	T	C	2: 121,138,125 (GRCm39)	V2933A	probably damaging	Het
Map2k5	A	T	9: 63,250,667 (GRCm39)		probably null	Het
Mcm6	A	G	1: 128,283,248 (GRCm39)		probably null	Het
Mmp17	G	A	5: 129,683,378 (GRCm39)	V505M	probably damaging	Het
Mpped2	A	G	2: 106,575,065 (GRCm39)	D50G	probably damaging	Het
Mtf1	T	A	4: 124,715,023 (GRCm39)	L216*	probably null	Het
Niban2	A	T	2: 32,811,105 (GRCm39)	M372L	probably benign	Het
Obscn	T	C	11: 58,890,638 (GRCm39)	E7298G	unknown	Het
Or52ab7	A	T	7: 102,978,212 (GRCm39)	H173L	possibly damaging	Het
Or56a3	T	C	7: 104,735,763 (GRCm39)	L280P	probably damaging	Het
Or6c205	T	C	10: 129,086,883 (GRCm39)	L160P	probably benign	Het
Or7d9	A	G	9: 20,197,358 (GRCm39)	D129G	probably damaging	Het
Otulinl	T	A	15: 27,664,884 (GRCm39)	H24L	probably benign	Het
Pax2	G	A	19: 44,777,215 (GRCm39)		probably null	Het
Pcnt	T	A	10: 76,244,675 (GRCm39)	E1135V	probably damaging	Het
Pgap3	A	T	11: 98,281,924 (GRCm39)	V129D	probably benign	Het
Polq	A	G	16: 36,860,869 (GRCm39)	N497S	probably benign	Het
Ppfia4	T	C	1: 134,227,122 (GRCm39)	T1138A		Het
Prickle4	A	G	17: 48,001,587 (GRCm39)	L32P		Het
Prl2c2	C	T	13: 13,171,896 (GRCm39)	G158R	probably damaging	Het
Psd3	A	G	8: 68,210,750 (GRCm39)	I752T	probably benign	Het
Sag	A	T	1: 87,756,158 (GRCm39)	Y255F	probably benign	Het
Scn7a	A	T	2: 66,506,199 (GRCm39)	D1563E	probably damaging	Het
Secisbp2	A	G	13: 51,837,404 (GRCm39)	N855S	probably benign	Het
Setd2	T	C	9: 110,421,467 (GRCm39)	V2011A	probably benign	Het
Slc30a6	T	C	17: 74,730,112 (GRCm39)	V334A	probably damaging	Het
Spen	A	G	4: 141,204,520 (GRCm39)	V1369A	unknown	Het
Stac2	T	C	11: 97,932,373 (GRCm39)	T207A	probably benign	Het
Syne2	T	C	12: 75,952,067 (GRCm39)	V445A	probably benign	Het
Tas2r131	C	A	6: 132,934,467 (GRCm39)	W114L	probably damaging	Het
Tgfbrap1	G	A	1: 43,088,959 (GRCm39)	R815*	probably null	Het
Trpv2	A	T	11: 62,481,112 (GRCm39)	I404L	probably benign	Het
Zfp236	G	A	18: 82,617,122 (GRCm39)	T1791M	probably damaging	Het

Other mutations in Hbs1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01542:Hbs1l	APN	10	21,183,655 (GRCm39)	missense	probably benign	0.03
IGL02948:Hbs1l	APN	10	21,217,610 (GRCm39)	splice site	probably benign
R0375:Hbs1l	UTSW	10	21,218,440 (GRCm39)	missense	possibly damaging	0.76
R0465:Hbs1l	UTSW	10	21,227,940 (GRCm39)	missense	probably null	0.85
R0555:Hbs1l	UTSW	10	21,225,222 (GRCm39)	missense	probably benign	0.14
R0909:Hbs1l	UTSW	10	21,183,637 (GRCm39)	missense	probably benign	0.00
R1172:Hbs1l	UTSW	10	21,180,537 (GRCm39)	missense	probably damaging	1.00
R1594:Hbs1l	UTSW	10	21,227,922 (GRCm39)	missense	probably benign	0.00
R1612:Hbs1l	UTSW	10	21,234,734 (GRCm39)	missense	probably damaging	1.00
R1869:Hbs1l	UTSW	10	21,234,305 (GRCm39)	splice site	probably null
R2109:Hbs1l	UTSW	10	21,217,831 (GRCm39)	nonsense	probably null
R2369:Hbs1l	UTSW	10	21,183,644 (GRCm39)	missense	probably benign	0.01
R2404:Hbs1l	UTSW	10	21,171,946 (GRCm39)	start gained	probably benign
R4077:Hbs1l	UTSW	10	21,228,501 (GRCm39)	missense	probably damaging	1.00
R4079:Hbs1l	UTSW	10	21,228,501 (GRCm39)	missense	probably damaging	1.00
R4534:Hbs1l	UTSW	10	21,217,814 (GRCm39)	missense	possibly damaging	0.74
R4796:Hbs1l	UTSW	10	21,218,405 (GRCm39)	missense	probably damaging	1.00
R4852:Hbs1l	UTSW	10	21,234,287 (GRCm39)	missense	possibly damaging	0.92
R5069:Hbs1l	UTSW	10	21,230,546 (GRCm39)	missense	probably damaging	1.00
R5946:Hbs1l	UTSW	10	21,217,655 (GRCm39)	missense	probably benign
R6232:Hbs1l	UTSW	10	21,183,657 (GRCm39)	splice site	probably null
R6264:Hbs1l	UTSW	10	21,243,656 (GRCm39)	missense	possibly damaging	0.92
R6542:Hbs1l	UTSW	10	21,180,516 (GRCm39)	missense	probably benign	0.11
R6831:Hbs1l	UTSW	10	21,217,767 (GRCm39)	missense	probably benign	0.29
R7295:Hbs1l	UTSW	10	21,186,051 (GRCm39)	missense	probably benign	0.12
R7470:Hbs1l	UTSW	10	21,234,683 (GRCm39)	missense	possibly damaging	0.96
R7652:Hbs1l	UTSW	10	21,240,659 (GRCm39)	missense	probably benign	0.02
R7695:Hbs1l	UTSW	10	21,175,116 (GRCm39)	missense	possibly damaging	0.49
R7909:Hbs1l	UTSW	10	21,234,303 (GRCm39)	critical splice donor site	probably null
R8325:Hbs1l	UTSW	10	21,183,548 (GRCm39)	missense	probably benign	0.02
R8353:Hbs1l	UTSW	10	21,185,178 (GRCm39)	missense	probably benign
R8453:Hbs1l	UTSW	10	21,185,178 (GRCm39)	missense	probably benign
R8861:Hbs1l	UTSW	10	21,220,963 (GRCm39)	splice site	probably benign
R8880:Hbs1l	UTSW	10	21,185,868 (GRCm39)	missense	probably damaging	0.99
R8933:Hbs1l	UTSW	10	21,243,584 (GRCm39)	nonsense	probably null
R9462:Hbs1l	UTSW	10	21,218,304 (GRCm39)	missense	probably damaging	1.00
R9654:Hbs1l	UTSW	10	21,183,604 (GRCm39)	missense	possibly damaging	0.95
X0018:Hbs1l	UTSW	10	21,227,886 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CTGGGGCAGAGGGTTCTTA -3'
(R):5'- TACATGAGGACAAGCACCCA -3'

Sequencing Primer
(F):5'- CAGGTAGACTTTCCACATTG -3'
(R):5'- TGAGGACAAGCACCCACACAC -3'

Posted On

2021-07-15