Mutagenetix > Incidental Mutation

Incidental Mutation 'R8895:Paip1'

677979

Institutional Source

Beutler Lab

Gene Symbol

Paip1

Ensembl Gene

ENSMUSG00000025451

Gene Name

polyadenylate binding protein-interacting protein 1

Synonyms

MMRRC Submission

068754-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.182) question?

Stock #

R8895 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

119565137-119594754 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 119566801 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Serine at position 45 (L45S)

Ref Sequence

ENSEMBL: ENSMUSP00000026520 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026520] [ENSMUST00000109203] [ENSMUST00000126957] [ENSMUST00000173627]

AlphaFold

Q8VE62

Predicted Effect

probably benign
Transcript: ENSMUST00000026520
AA Change: L45S

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000026520
Gene: ENSMUSG00000025451
AA Change: L45S

Domain	Start	End	E-Value	Type
Pfam:PAM2	44	61	8.9e-8	PFAM
MIF4G	80	297	2.62e-46	SMART
low complexity region	373	385	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000109203
AA Change: L12S

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000104826
Gene: ENSMUSG00000025451
AA Change: L12S

Domain	Start	End	E-Value	Type
Pfam:PAM2	11	28	3.7e-7	PFAM
MIF4G	47	264	2.62e-46	SMART
low complexity region	340	352	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000126957
AA Change: L129S

PolyPhen 2 Score 0.067 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000117256
Gene: ENSMUSG00000025451
AA Change: L129S

Domain	Start	End	E-Value	Type
low complexity region	7	38	N/A	INTRINSIC
low complexity region	44	74	N/A	INTRINSIC
low complexity region	79	91	N/A	INTRINSIC
Pfam:PAM2	128	145	3.3e-7	PFAM
MIF4G	164	381	2.62e-46	SMART
low complexity region	457	469	N/A	INTRINSIC

Predicted Effect

SMART Domains

Protein: ENSMUSP00000134617
Gene: ENSMUSG00000025451
AA Change: L133S

Domain	Start	End	E-Value	Type
low complexity region	7	38	N/A	INTRINSIC
low complexity region	44	74	N/A	INTRINSIC
low complexity region	79	91	N/A	INTRINSIC
Pfam:PAM2	128	145	6.8e-5	PFAM
Pfam:MIF4G	164	267	1.9e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000173627
AA Change: L45S

PolyPhen 2 Score 0.170 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000134051
Gene: ENSMUSG00000025451
AA Change: L45S

Domain	Start	End	E-Value	Type
Pfam:PAM2	44	61	3.6e-7	PFAM
MIF4G	80	297	2.62e-46	SMART

Predicted Effect

SMART Domains

Protein: ENSMUSP00000134502
Gene: ENSMUSG00000025451
AA Change: L36S

Domain	Start	End	E-Value	Type
Pfam:PAM2	36	53	2.4e-7	PFAM
Pfam:MIF4G	72	207	1.6e-27	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (74/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene interacts with poly(A)-binding protein and with the cap-binding complex eIF4A. It is involved in translational initiation and protein biosynthesis. Overexpression of this gene in COS7 cells stimulates translation. Alternative splicing occurs at this locus and three transcript variants encoding three distinct isoforms have been identified. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930567H17Rik	G	A	X: 69,437,994 (GRCm39)	R100W	possibly damaging	Het
Adamts10	G	A	17: 33,768,270 (GRCm39)	R814H	probably damaging	Het
Akr1a1	A	G	4: 116,498,260 (GRCm39)	L95P	probably damaging	Het
Amigo2	G	T	15: 97,143,389 (GRCm39)	N344K	probably damaging	Het
Ankrd11	T	C	8: 123,621,014 (GRCm39)	D946G	possibly damaging	Het
Arb2a	T	A	13: 78,147,773 (GRCm39)	N280K	probably damaging	Het
Btnl6	T	G	17: 34,734,391 (GRCm39)	I124L	probably benign	Het
Bzw2	A	T	12: 36,173,982 (GRCm39)	C97*	probably null	Het
Celsr2	G	A	3: 108,320,880 (GRCm39)	T644I	possibly damaging	Het
Cep85l	A	T	10: 53,224,911 (GRCm39)	L226Q	possibly damaging	Het
Ces1g	T	C	8: 94,046,512 (GRCm39)	K338E	possibly damaging	Het
Cldn10	G	A	14: 119,092,507 (GRCm39)	D36N	probably damaging	Het
Cntnap4	T	A	8: 113,479,598 (GRCm39)	I261N	probably benign	Het
Csnk1g1	T	C	9: 65,915,109 (GRCm39)		probably null	Het
Cyp2c69	T	C	19: 39,869,910 (GRCm39)	D104G	possibly damaging	Het
Cyp3a11	T	C	5: 145,797,330 (GRCm39)	T350A	probably benign	Het
Daw1	T	A	1: 83,187,011 (GRCm39)	C274S	probably damaging	Het
Dmtn	T	C	14: 70,850,144 (GRCm39)	T267A	probably benign	Het
Dock5	A	G	14: 68,055,112 (GRCm39)	Y585H	possibly damaging	Het
Dsg2	T	G	18: 20,723,126 (GRCm39)	V384G	probably damaging	Het
Elmo1	C	T	13: 20,748,630 (GRCm39)	L492F	probably damaging	Het
Fmo1	T	C	1: 162,657,827 (GRCm39)	D438G	probably benign	Het
Folr2	C	T	7: 101,489,408 (GRCm39)	V244M	unknown	Het
Galnt18	T	C	7: 111,378,709 (GRCm39)	I16V	possibly damaging	Het
Gm10036	C	A	18: 15,966,207 (GRCm39)	Y119*	probably null	Het
Gria4	A	G	9: 4,664,951 (GRCm39)	S102P	probably damaging	Het
Hc	A	T	2: 34,890,861 (GRCm39)	N1318K	probably benign	Het
Ifitm1	T	C	7: 140,549,499 (GRCm39)	L94P	probably damaging	Het
Iqca1l	T	C	5: 24,755,628 (GRCm39)	D298G	probably benign	Het
Itga9	G	A	9: 118,510,835 (GRCm39)	V455M	probably damaging	Het
Kank4	C	T	4: 98,653,747 (GRCm39)	V894I	possibly damaging	Het
Kcnip2	T	A	19: 45,785,100 (GRCm39)		probably benign	Het
Lamb1	A	G	12: 31,352,953 (GRCm39)	T885A	possibly damaging	Het
Lamp5	A	G	2: 135,902,874 (GRCm39)	T198A	probably benign	Het
Ldc1	T	C	4: 130,105,223 (GRCm39)	K316E	probably benign	Het
Lipi	A	T	16: 75,352,710 (GRCm39)	L376I	probably benign	Het
Lrrc37	T	A	11: 103,509,656 (GRCm39)	T771S	unknown	Het
Luc7l	T	C	17: 26,472,978 (GRCm39)	I31T	possibly damaging	Het
Malrd1	A	T	2: 15,850,038 (GRCm39)	N1219I	unknown	Het
Mcf2l	C	T	8: 13,034,330 (GRCm39)		probably benign	Het
Mrc1	A	C	2: 14,312,760 (GRCm39)	N894T	probably damaging	Het
Mrpl35	C	T	6: 71,793,271 (GRCm39)	A127T	possibly damaging	Het
Myom2	T	A	8: 15,152,589 (GRCm39)	Y645*	probably null	Het
Naip2	T	C	13: 100,325,644 (GRCm39)	H88R	probably benign	Het
Noc3l	T	A	19: 38,798,751 (GRCm39)	K282N	probably damaging	Het
Nwd2	T	C	5: 63,963,241 (GRCm39)	Y942H	probably damaging	Het
Or10ag2	T	C	2: 87,248,659 (GRCm39)	V87A	probably benign	Het
Or52d1	T	A	7: 103,756,302 (GRCm39)	I272N	probably damaging	Het
Osbpl9	C	A	4: 108,930,333 (GRCm39)	A221S	probably benign	Het
Peak1	T	C	9: 56,113,938 (GRCm39)	T1668A	probably benign	Het
Pgap3	A	G	11: 98,281,602 (GRCm39)	F199L	possibly damaging	Het
Ppip5k2	T	C	1: 97,639,544 (GRCm39)	M1061V	probably benign	Het
Ppp6r3	A	T	19: 3,544,017 (GRCm39)	W333R	probably damaging	Het
Ptk2b	T	A	14: 66,412,242 (GRCm39)	N383I	probably benign	Het
Rab21	G	C	10: 115,151,080 (GRCm39)	R58G	probably benign	Het
Rabif	C	T	1: 134,433,935 (GRCm39)	T83I	probably damaging	Het
Rdh7	A	T	10: 127,724,430 (GRCm39)	F18Y	probably benign	Het
Scart2	C	T	7: 139,841,532 (GRCm39)	P279S	possibly damaging	Het
Septin5	A	G	16: 18,441,861 (GRCm39)	M315T	possibly damaging	Het
Slc27a6	A	G	18: 58,715,306 (GRCm39)	Y303C	probably damaging	Het
Slc7a7	T	A	14: 54,607,293 (GRCm39)	M495L	probably benign	Het
Sntg1	T	A	1: 8,748,074 (GRCm39)		probably null	Het
Spred2	T	A	11: 19,951,019 (GRCm39)	I72N	probably benign	Het
St3gal1	A	T	15: 66,980,086 (GRCm39)	I271N	possibly damaging	Het
Stox1	A	T	10: 62,495,386 (GRCm39)	H962Q	probably benign	Het
Supt6	A	T	11: 78,103,664 (GRCm39)	M1347K	probably damaging	Het
Susd2	G	T	10: 75,475,452 (GRCm39)	A484D	possibly damaging	Het
Tmem260	A	G	14: 48,737,845 (GRCm39)		probably benign	Het
Tpbg	C	A	9: 85,726,520 (GRCm39)	A163E	possibly damaging	Het
Tpx2	T	C	2: 152,724,255 (GRCm39)	Y344H	probably damaging	Het
Ttf2	A	T	3: 100,870,028 (GRCm39)	F348L	probably benign	Het
Ttn	A	T	2: 76,663,650 (GRCm39)	V11675E	unknown	Het
Txnl4b	T	A	8: 110,299,467 (GRCm39)	Y142*	probably null	Het
Vmn2r18	G	A	5: 151,485,140 (GRCm39)	R785C	possibly damaging	Het
Zbtb18	T	A	1: 177,276,044 (GRCm39)	V459E	probably damaging	Het

Other mutations in Paip1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02668:Paip1	APN	13	119,574,607 (GRCm39)	missense	probably damaging	1.00
IGL02873:Paip1	APN	13	119,582,348 (GRCm39)	missense	possibly damaging	0.95
R0517:Paip1	UTSW	13	119,584,326 (GRCm39)	missense	probably damaging	1.00
R0791:Paip1	UTSW	13	119,566,854 (GRCm39)	missense	possibly damaging	0.69
R0792:Paip1	UTSW	13	119,566,854 (GRCm39)	missense	possibly damaging	0.69
R1419:Paip1	UTSW	13	119,593,553 (GRCm39)	missense	probably damaging	0.99
R1572:Paip1	UTSW	13	119,588,320 (GRCm39)	unclassified	probably benign
R1935:Paip1	UTSW	13	119,593,550 (GRCm39)	missense	probably damaging	1.00
R1936:Paip1	UTSW	13	119,593,550 (GRCm39)	missense	probably damaging	1.00
R2072:Paip1	UTSW	13	119,566,798 (GRCm39)	missense	possibly damaging	0.88
R3827:Paip1	UTSW	13	119,566,768 (GRCm39)	start codon destroyed	probably null	0.47
R4082:Paip1	UTSW	13	119,593,540 (GRCm39)	missense	probably damaging	1.00
R4092:Paip1	UTSW	13	119,586,449 (GRCm39)	missense	probably benign	0.02
R4854:Paip1	UTSW	13	119,586,425 (GRCm39)	splice site	probably benign
R5012:Paip1	UTSW	13	119,584,338 (GRCm39)	missense	probably benign
R5103:Paip1	UTSW	13	119,574,515 (GRCm39)	missense	possibly damaging	0.95
R5425:Paip1	UTSW	13	119,566,702 (GRCm39)	missense	possibly damaging	0.60
R5592:Paip1	UTSW	13	119,587,334 (GRCm39)	missense	probably damaging	1.00
R5851:Paip1	UTSW	13	119,577,301 (GRCm39)	missense	possibly damaging	0.94
R5929:Paip1	UTSW	13	119,582,326 (GRCm39)	missense	probably damaging	1.00
R5976:Paip1	UTSW	13	119,593,533 (GRCm39)	missense	probably damaging	1.00
R6021:Paip1	UTSW	13	119,593,671 (GRCm39)	frame shift	probably null
R6326:Paip1	UTSW	13	119,566,753 (GRCm39)	missense	probably benign	0.00
R6964:Paip1	UTSW	13	119,587,306 (GRCm39)	missense	possibly damaging	0.61
R7544:Paip1	UTSW	13	119,582,337 (GRCm39)	missense	probably damaging	1.00
R7552:Paip1	UTSW	13	119,577,356 (GRCm39)	missense	possibly damaging	0.83
R7659:Paip1	UTSW	13	119,587,306 (GRCm39)	missense	possibly damaging	0.61
R7660:Paip1	UTSW	13	119,587,306 (GRCm39)	missense	possibly damaging	0.61
R7661:Paip1	UTSW	13	119,587,306 (GRCm39)	missense	possibly damaging	0.61
R7984:Paip1	UTSW	13	119,566,698 (GRCm39)	nonsense	probably null
R8294:Paip1	UTSW	13	119,587,300 (GRCm39)	missense	possibly damaging	0.95
R8884:Paip1	UTSW	13	119,574,553 (GRCm39)	missense	probably damaging	1.00
R8888:Paip1	UTSW	13	119,566,801 (GRCm39)	missense	probably benign	0.02
R9315:Paip1	UTSW	13	119,586,516 (GRCm39)	missense	probably benign	0.24
Z1177:Paip1	UTSW	13	119,584,344 (GRCm39)	missense	probably benign	0.16

Predicted Primers

PCR Primer
(F):5'- AGTTCTCAGACGGTTTCTAAATCTG -3'
(R):5'- AGTACTGAAAGCAGCCAGC -3'

Sequencing Primer
(F):5'- GGAATGAATACATCTAGCACTGTTTG -3'
(R):5'- ACACAAGACTTGTAGGAGG -3'

Posted On

2021-08-02