Mutagenetix > Incidental Mutation

Incidental Mutation 'R8917:Zxdc'

678993

Institutional Source

Beutler Lab

Gene Symbol

Zxdc

Ensembl Gene

ENSMUSG00000034430

Gene Name

ZXD family zinc finger C

Synonyms

B930086F11Rik

MMRRC Submission

068704-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.128) question?

Stock #

R8917 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

90346474-90380472 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 90359305 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 646 (T646A)

Ref Sequence

ENSEMBL: ENSMUSP00000074619 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045740] [ENSMUST00000075117] [ENSMUST00000113539]

AlphaFold

Q8C8V1

Predicted Effect

probably benign
Transcript: ENSMUST00000045740

SMART Domains

Protein: ENSMUSP00000036329
Gene: ENSMUSG00000034430

Domain	Start	End	E-Value	Type
low complexity region	22	73	N/A	INTRINSIC
low complexity region	105	115	N/A	INTRINSIC
low complexity region	134	152	N/A	INTRINSIC
ZnF_C2H2	176	200	4.79e-3	SMART
ZnF_C2H2	209	233	4.3e-5	SMART
ZnF_C2H2	239	263	4.3e-5	SMART
ZnF_C2H2	269	291	1.69e-3	SMART
ZnF_C2H2	298	322	1.82e-3	SMART
ZnF_C2H2	329	353	1.26e-2	SMART
ZnF_C2H2	359	383	1.36e-2	SMART
ZnF_C2H2	389	413	5.21e-4	SMART
ZnF_C2H2	419	443	4.72e-2	SMART
ZnF_C2H2	452	477	3.07e-1	SMART
low complexity region	487	502	N/A	INTRINSIC
low complexity region	635	651	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000075117
AA Change: T646A

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000074619
Gene: ENSMUSG00000034430
AA Change: T646A

Domain	Start	End	E-Value	Type
low complexity region	22	73	N/A	INTRINSIC
low complexity region	105	115	N/A	INTRINSIC
low complexity region	134	152	N/A	INTRINSIC
ZnF_C2H2	176	200	4.79e-3	SMART
ZnF_C2H2	209	233	4.3e-5	SMART
ZnF_C2H2	239	263	4.3e-5	SMART
ZnF_C2H2	269	291	1.69e-3	SMART
ZnF_C2H2	298	322	1.82e-3	SMART
ZnF_C2H2	329	353	1.26e-2	SMART
ZnF_C2H2	359	383	1.36e-2	SMART
ZnF_C2H2	389	413	5.21e-4	SMART
ZnF_C2H2	419	443	4.72e-2	SMART
ZnF_C2H2	452	477	3.07e-1	SMART
low complexity region	487	502	N/A	INTRINSIC
low complexity region	635	651	N/A	INTRINSIC
low complexity region	799	811	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000113539
AA Change: T646A

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000109167
Gene: ENSMUSG00000034430
AA Change: T646A

Domain	Start	End	E-Value	Type
low complexity region	44	95	N/A	INTRINSIC
low complexity region	127	137	N/A	INTRINSIC
low complexity region	156	174	N/A	INTRINSIC
ZnF_C2H2	198	222	4.79e-3	SMART
ZnF_C2H2	231	255	4.3e-5	SMART
ZnF_C2H2	261	285	4.3e-5	SMART
ZnF_C2H2	291	313	1.69e-3	SMART
ZnF_C2H2	320	344	1.82e-3	SMART
ZnF_C2H2	351	375	1.26e-2	SMART
ZnF_C2H2	381	405	1.36e-2	SMART
ZnF_C2H2	411	435	5.21e-4	SMART
ZnF_C2H2	441	465	4.72e-2	SMART
ZnF_C2H2	474	499	3.07e-1	SMART
low complexity region	509	524	N/A	INTRINSIC
low complexity region	657	673	N/A	INTRINSIC

Predicted Effect

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (57/57)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610528J11Rik	A	G	4: 118,386,490 (GRCm39)	M1V	probably null	Het
Acss3	T	C	10: 106,773,124 (GRCm39)	S621G	probably benign	Het
Adam1a	C	T	5: 121,657,145 (GRCm39)	R716Q	probably benign	Het
Ankrd26	G	T	6: 118,535,902 (GRCm39)	N177K	probably damaging	Het
Ankrd31	G	A	13: 96,969,212 (GRCm39)	V950I	probably damaging	Het
Ano4	A	G	10: 88,788,160 (GRCm39)	Y922H	probably damaging	Het
Axin2	A	T	11: 108,822,341 (GRCm39)	N298Y	probably damaging	Het
Celsr2	A	T	3: 108,303,882 (GRCm39)	M2392K	probably benign	Het
Coasy	A	G	11: 100,974,202 (GRCm39)	S123G	probably benign	Het
Cracdl	A	G	1: 37,676,993 (GRCm39)	V63A	probably damaging	Het
Ctla2a	A	T	13: 61,083,854 (GRCm39)	M26K	probably benign	Het
Cts8	A	T	13: 61,396,882 (GRCm39)		probably benign	Het
Cyp4a30b	C	A	4: 115,311,662 (GRCm39)	S110*	probably null	Het
Eif2ak4	A	G	2: 118,287,617 (GRCm39)	Y1195C	probably damaging	Het
Erh	G	T	12: 80,684,282 (GRCm39)	A65E	probably benign	Het
Exoc6	A	G	19: 37,578,360 (GRCm39)	D401G	probably benign	Het
Fmo1	A	G	1: 162,663,773 (GRCm39)	V252A	probably benign	Het
Furin	T	C	7: 80,048,437 (GRCm39)	K28E	probably benign	Het
Gmip	T	A	8: 70,270,428 (GRCm39)	F713I	probably damaging	Het
Hyal6	T	C	6: 24,734,103 (GRCm39)	L12P	possibly damaging	Het
Ido1	T	C	8: 25,081,523 (GRCm39)	N144D	probably benign	Het
Igsf10	T	A	3: 59,226,888 (GRCm39)	T2262S	possibly damaging	Het
Insrr	T	C	3: 87,718,276 (GRCm39)	F923S	probably benign	Het
Kank1	G	T	19: 25,386,928 (GRCm39)	M200I	probably damaging	Het
Kctd15	A	G	7: 34,341,508 (GRCm39)	Y140H	probably damaging	Het
Kif3c	T	A	12: 3,416,690 (GRCm39)	I237N	probably damaging	Het
Klhl26	T	C	8: 70,905,455 (GRCm39)	S152G	possibly damaging	Het
Lce1k	C	A	3: 92,714,097 (GRCm39)	C29F	unknown	Het
Map1a	A	G	2: 121,131,791 (GRCm39)	E869G	possibly damaging	Het
Mcmbp	T	C	7: 128,300,281 (GRCm39)	E576G	probably benign	Het
Mrps22	A	G	9: 98,476,163 (GRCm39)	V231A	probably benign	Het
Myo1a	C	T	10: 127,551,534 (GRCm39)	L697F	possibly damaging	Het
Ncapd3	T	C	9: 26,999,297 (GRCm39)	V1291A	probably benign	Het
Nherf4	T	A	9: 44,160,141 (GRCm39)		probably benign	Het
Or9m1	A	T	2: 87,733,307 (GRCm39)	S238T	possibly damaging	Het
Pcdhb6	A	G	18: 37,468,431 (GRCm39)	T451A	possibly damaging	Het
Pi4ka	C	A	16: 17,130,310 (GRCm39)	W1032L		Het
Pkhd1l1	T	A	15: 44,396,403 (GRCm39)	I1975N	probably benign	Het
Pnpla6	T	C	8: 3,567,637 (GRCm39)	M115T	possibly damaging	Het
Poldip2	G	A	11: 78,412,667 (GRCm39)	R347Q	probably damaging	Het
Pramel18	G	A	4: 101,768,935 (GRCm39)	V429M	probably benign	Het
Rapgef6	C	T	11: 54,582,392 (GRCm39)	Q1440*	probably null	Het
Rtn3	A	T	19: 7,434,105 (GRCm39)	I629K	possibly damaging	Het
Selenov	A	G	7: 27,987,728 (GRCm39)	F278L	probably damaging	Het
Skor2	G	A	18: 76,948,504 (GRCm39)	G742D	probably damaging	Het
Spata31d1c	C	T	13: 65,183,429 (GRCm39)	P324S	probably benign	Het
Tbc1d14	A	T	5: 36,676,682 (GRCm39)	I403N	probably damaging	Het
Tekt3	A	T	11: 62,978,052 (GRCm39)	Q374L	probably damaging	Het
Tg	T	C	15: 66,645,332 (GRCm39)		probably null	Het
Thnsl2	T	C	6: 71,116,927 (GRCm39)	D75G	probably benign	Het
Tnr	A	T	1: 159,701,692 (GRCm39)	K598*	probably null	Het
Tshr	T	A	12: 91,468,829 (GRCm39)		probably benign	Het
Uggt1	A	G	1: 36,185,735 (GRCm39)	S1483P		Het
Usp42	T	C	5: 143,701,695 (GRCm39)	E776G		Het
Vmn2r118	T	C	17: 55,917,216 (GRCm39)	E432G	possibly damaging	Het
Vmn2r-ps158	T	C	7: 42,697,433 (GRCm39)	I830T	probably damaging	Het
Zfhx4	A	G	3: 5,464,159 (GRCm39)	E1464G	probably damaging	Het
Zfp518a	A	C	19: 40,901,870 (GRCm39)	K600Q	possibly damaging	Het

Other mutations in Zxdc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01468:Zxdc	APN	6	90,350,761 (GRCm39)	missense	probably damaging	1.00
IGL01943:Zxdc	APN	6	90,349,520 (GRCm39)	intron	probably benign
IGL02406:Zxdc	APN	6	90,375,818 (GRCm39)	missense	probably benign	0.00
IGL02596:Zxdc	APN	6	90,350,691 (GRCm39)	critical splice acceptor site	probably null
IGL02623:Zxdc	APN	6	90,359,352 (GRCm39)	missense	probably damaging	0.99
IGL02927:Zxdc	APN	6	90,349,544 (GRCm39)	missense	probably damaging	1.00
IGL03230:Zxdc	APN	6	90,350,785 (GRCm39)	missense	probably damaging	1.00
PIT4378001:Zxdc	UTSW	6	90,350,698 (GRCm39)	missense	probably damaging	1.00
R0071:Zxdc	UTSW	6	90,347,398 (GRCm39)	missense	probably damaging	1.00
R0194:Zxdc	UTSW	6	90,349,519 (GRCm39)	intron	probably benign
R1065:Zxdc	UTSW	6	90,355,885 (GRCm39)	missense	probably damaging	1.00
R1377:Zxdc	UTSW	6	90,355,885 (GRCm39)	missense	probably damaging	1.00
R1405:Zxdc	UTSW	6	90,361,225 (GRCm39)	missense	possibly damaging	0.50
R1405:Zxdc	UTSW	6	90,361,225 (GRCm39)	missense	possibly damaging	0.50
R1692:Zxdc	UTSW	6	90,355,933 (GRCm39)	nonsense	probably null
R2171:Zxdc	UTSW	6	90,359,461 (GRCm39)	missense	possibly damaging	0.53
R3952:Zxdc	UTSW	6	90,347,449 (GRCm39)	splice site	probably null
R4400:Zxdc	UTSW	6	90,346,792 (GRCm39)	missense	probably damaging	1.00
R4660:Zxdc	UTSW	6	90,355,820 (GRCm39)	missense	probably damaging	0.99
R4776:Zxdc	UTSW	6	90,347,500 (GRCm39)	missense	probably damaging	1.00
R4781:Zxdc	UTSW	6	90,349,535 (GRCm39)	missense	probably damaging	0.98
R4843:Zxdc	UTSW	6	90,359,254 (GRCm39)	missense	probably damaging	1.00
R5028:Zxdc	UTSW	6	90,359,320 (GRCm39)	missense	probably benign	0.44
R5260:Zxdc	UTSW	6	90,359,075 (GRCm39)	missense	probably damaging	1.00
R5279:Zxdc	UTSW	6	90,347,419 (GRCm39)	missense	possibly damaging	0.86
R5324:Zxdc	UTSW	6	90,350,782 (GRCm39)	missense	probably damaging	1.00
R5363:Zxdc	UTSW	6	90,359,128 (GRCm39)	missense	probably damaging	0.97
R5436:Zxdc	UTSW	6	90,347,542 (GRCm39)	missense	probably damaging	0.99
R5872:Zxdc	UTSW	6	90,347,281 (GRCm39)	missense	probably damaging	0.99
R5940:Zxdc	UTSW	6	90,347,307 (GRCm39)	missense	probably damaging	1.00
R6762:Zxdc	UTSW	6	90,359,165 (GRCm39)	missense	probably benign
R7175:Zxdc	UTSW	6	90,346,645 (GRCm39)	missense	possibly damaging	0.85
R7197:Zxdc	UTSW	6	90,355,819 (GRCm39)	missense	probably damaging	0.99
R7238:Zxdc	UTSW	6	90,346,642 (GRCm39)	missense	unknown
R7247:Zxdc	UTSW	6	90,361,155 (GRCm39)	missense	unknown
R7917:Zxdc	UTSW	6	90,358,991 (GRCm39)	missense	probably damaging	1.00
R7976:Zxdc	UTSW	6	90,375,749 (GRCm39)	missense	probably benign	0.05
R8792:Zxdc	UTSW	6	90,346,986 (GRCm39)	missense	probably benign	0.00
R9016:Zxdc	UTSW	6	90,359,254 (GRCm39)	missense	probably damaging	1.00
R9076:Zxdc	UTSW	6	90,349,821 (GRCm39)	missense	probably damaging	1.00
R9190:Zxdc	UTSW	6	90,375,773 (GRCm39)	missense	probably damaging	0.96
R9216:Zxdc	UTSW	6	90,359,189 (GRCm39)	missense	probably benign	0.37

Predicted Primers

PCR Primer
(F):5'- CTTGTTCTTGGGACATCGGC -3'
(R):5'- GAGTGCTTCATACCAAGTAGAGAC -3'

Sequencing Primer
(F):5'- ATCGGCCACGGTTCTCCAAC -3'
(R):5'- TCATACCAAGTAGAGACTGCCTGTG -3'

Posted On

2021-08-02